genome.fa.s5.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  219  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69459928--69460901	47	20.6	47	94	1	1707	32	8	29	29	1.86
69459928--69460901	331	2.9	331	95	1	1747	32	8	29	29	1.86
69467300--69467515	39	5.5	39	92	1	351	27	28	23	20	1.99
69467508--69467639	39	3.4	39	93	2	212	25	25	19	29	1.99
69467302--69467632	78	4.2	80	84	4	340	26	27	22	23	1.99
69467298--69467564	117	2.3	119	84	3	371	26	28	22	22	1.99
69470066--69470275	39	5.3	39	91	2	316	25	21	27	25	2.00
69476495--69476710	39	5.5	39	91	1	333	27	27	23	20	1.99
69476493--69476759	117	2.3	118	82	3	333	26	27	22	23	1.99
69476705--69476834	39	3.3	39	91	2	190	26	23	19	30	1.98
69481090--69481168	40	2.0	40	92	5	133	25	12	26	35	1.92
69482322--69482349	14	2.0	14	100	0	56	28	0	35	35	1.58
69488353--69488430	28	2.8	29	82	5	90	35	19	23	21	1.96
69488546--69488610	28	2.3	28	91	0	103	32	7	27	32	1.85
69495002--69495113	28	4.0	28	81	4	127	29	12	28	29	1.93
69500845--69500923	37	2.1	37	90	0	122	25	31	18	24	1.98
69501093--69501139	22	2.1	22	100	0	94	36	27	0	36	1.57
69501046--69501186	69	2.0	69	88	0	210	29	31	7	32	1.84
69501280--69501353	22	3.3	22	64	17	62	28	31	10	29	1.91
69501115--69501520	47	8.6	47	96	2	726	29	29	8	32	1.87
69505404--69505506	42	2.5	40	80	10	127	22	21	33	23	1.98
69507721--69507763	21	2.1	20	86	4	59	51	4	9	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69512056--69512219	47	3.4	47	94	3	292	31	28	6	33	1.83
69513676--69513795	56	2.1	56	98	0	231	22	23	9	45	1.81
69523730--69523771	21	2.1	21	86	8	61	33	4	11	50	1.60
69525146--69525232	38	2.3	38	97	0	165	44	11	2	41	1.53
69529090--69529125	18	2.0	18	100	0	72	38	16	11	33	1.84
69532408--69532596	23	8.2	23	85	4	206	22	21	25	30	1.99
69532553--69532668	58	2.0	58	98	0	223	18	20	25	35	1.96
69537269--69537397	46	2.8	46	93	0	213	30	29	20	19	1.97
69537277--69537416	46	3.0	46	76	12	144	29	29	20	20	1.98
69540946--69541157	23	9.2	23	82	2	237	24	19	25	31	1.98
69543337--69543438	6	16.8	6	75	17	95	48	14	17	19	1.82
69543337--69543438	30	3.4	30	89	6	152	48	14	17	19	1.82
69543558--69543629	27	2.7	27	73	14	69	38	19	23	18	1.93
69543794--69543852	22	2.7	22	81	0	64	32	22	25	20	1.98
69543943--69544022	27	3.0	26	88	3	106	35	20	25	20	1.96
69544221--69544408	27	7.0	27	85	0	223	24	20	19	36	1.95
69544221--69544416	54	3.6	54	83	5	252	25	19	18	36	1.94
69544221--69544408	81	2.3	81	84	1	252	24	20	19	36	1.95
69544425--69544830	27	15.0	27	81	6	437	40	8	22	28	1.83
69550806--69550933	39	3.3	39	91	0	193	25	26	18	29	1.98
69553197--69553233	7	5.3	7	100	0	74	29	0	56	13	1.37
69553622--69553647	13	2.0	13	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69562083--69562252	40	4.3	40	89	0	225	26	29	20	23	1.99
69569988--69570157	40	4.3	40	90	0	234	26	28	21	23	1.99
69574388--69574432	23	1.9	24	90	4	74	24	51	2	22	1.60
69574688--69574846	27	5.9	27	88	0	219	42	18	13	25	1.88
69577085--69577120	7	5.1	7	86	0	54	30	0	41	27	1.56
69580210--69580481	48	5.7	48	79	5	284	27	18	28	25	1.98
69580200--69580481	96	2.9	96	83	5	322	27	18	28	25	1.98
69580210--69580481	144	1.9	144	87	1	402	27	18	28	25	1.98
69583057--69583106	10	5.0	10	81	13	59	68	2	8	22	1.26
69588105--69588281	40	4.4	40	82	2	205	25	27	24	22	2.00
69588130--69588281	80	1.9	80	89	2	234	25	28	24	22	1.99
69595048--69595155	44	2.5	42	83	7	128	24	14	25	36	1.93
69595099--69595203	42	2.5	42	80	1	111	24	16	24	34	1.95
69599759--69600055	98	3.1	96	80	5	284	24	27	19	28	1.98
69599761--69600055	49	6.2	48	75	8	194	24	27	19	29	1.98
69599901--69600055	46	3.3	46	73	10	152	23	27	18	29	1.98
69599898--69600116	93	2.3	92	80	9	221	22	26	19	31	1.98
69609421--69609570	41	3.7	41	79	1	185	22	22	27	28	1.99
69617526--69617675	41	3.7	41	80	1	185	21	21	28	29	1.98
69622744--69622781	7	5.6	7	96	3	69	76	0	13	10	1.02
69624786--69625007	68	3.3	66	85	8	268	34	15	28	21	1.94
69624846--69625041	66	2.9	67	83	8	206	33	15	29	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69632379--69632536	68	2.3	67	95	2	280	31	15	29	24	1.95
69632413--69632610	68	2.9	68	83	10	203	33	15	29	21	1.94
69637389--69637506	46	2.6	46	79	2	130	23	25	16	33	1.96
69647159--69647217	29	2.0	29	96	0	109	15	16	25	42	1.88
69660786--69660824	20	2.0	20	100	0	78	30	10	5	53	1.56
69662703--69662745	18	2.4	18	88	0	59	4	20	4	69	1.25
69666644--69667092	49	9.3	49	93	2	732	31	8	30	29	1.87
69666640--69667089	145	3.1	145	92	2	744	31	8	30	29	1.87
69667211--69667289	37	2.1	37	90	0	122	24	18	31	25	1.98
69668504--69668815	40	7.8	40	89	0	480	25	21	26	25	1.99
69673193--69673370	27	6.6	27	84	3	205	29	28	15	26	1.96
69673214--69673369	82	1.9	81	88	3	233	29	28	15	26	1.96
69679300--69679469	46	3.7	46	76	10	184	25	20	24	30	1.99
69679346--69679517	47	3.7	47	76	10	199	23	20	26	29	1.99
69679298--69679524	93	2.4	93	93	0	373	24	19	26	29	1.99
69685277--69685446	46	3.7	46	78	10	202	24	21	24	29	1.99
69685323--69685494	47	3.7	47	77	10	208	23	20	26	28	1.99
69685275--69685501	93	2.4	93	93	0	382	23	20	26	29	1.99
69692454--69692685	49	4.7	50	82	2	279	28	26	18	25	1.98
69692454--69692683	100	2.3	99	85	2	291	29	26	19	25	1.98
69702412--69702535	29	4.3	29	92	2	198	29	30	13	25	1.94
69702751--69702781	16	1.9	16	93	0	53	12	22	12	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69715686--69715775	34	2.6	34	79	6	92	28	23	21	26	1.99
69728723--69728798	40	1.9	40	86	0	107	17	10	34	38	1.84
69728722--69728806	40	2.2	38	79	8	98	17	10	34	37	1.84
69729589--69729628	6	7.2	6	83	16	59	85	15	0	0	0.61
69729591--69729631	15	2.8	15	92	3	66	85	14	0	0	0.60
69729589--69729630	21	2.0	21	100	0	84	85	14	0	0	0.59
69729778--69729807	7	4.1	7	95	4	51	70	0	0	30	0.88
69733679--69733741	28	2.2	30	80	13	78	60	3	3	33	1.28
69733681--69733741	29	2.1	29	85	8	81	60	3	3	32	1.29
69734564--69734608	23	1.9	24	90	4	74	75	11	2	11	1.13
69735953--69735997	20	2.2	20	88	0	63	51	0	13	35	1.41
69737426--69737475	22	2.3	22	93	6	84	28	4	22	46	1.70
69741065--69741236	40	4.3	40	88	2	222	25	21	27	25	1.99
69741065--69741236	79	2.2	79	84	3	220	25	21	27	25	1.99
69741092--69741269	79	2.2	80	80	3	191	25	21	28	24	1.99
69752227--69752532	46	6.5	47	76	10	222	28	17	29	23	1.97
69752227--69752538	47	6.7	46	73	11	190	28	17	30	23	1.97
69761756--69762186	47	9.0	48	93	3	708	33	8	28	29	1.86
69761761--69762186	96	4.4	96	96	1	748	33	8	28	29	1.87
69763537--69763687	27	5.6	27	83	4	178	29	27	15	27	1.96
69763537--69763686	82	1.8	81	88	4	230	30	28	15	26	1.96
69765330--69765543	47	4.5	47	91	1	329	32	7	30	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69770328--69770448	47	2.6	45	78	13	122	29	17	30	22	1.96
69774781--69774812	12	2.7	12	100	0	64	6	34	28	31	1.82
69777105--69777187	29	2.9	29	89	1	123	33	26	9	30	1.88
69779800--69779908	54	2.0	54	98	0	209	41	17	14	26	1.88
69781727--69781757	8	3.9	8	91	0	53	38	22	0	38	1.54
69783132--69783188	25	2.3	25	79	8	64	31	21	22	24	1.98
69788614--69788671	30	1.9	30	92	0	98	32	13	25	27	1.94
69789013--69789367	47	7.6	46	71	12	215	27	21	28	22	1.99
69789016--69789371	94	3.8	91	76	10	319	27	21	28	22	1.99
69795547--69795618	32	2.2	32	87	4	110	22	16	23	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318