Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  97  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32099569--32099598
11
2.6
11
94
5
51
50
0
0
50
1.00
32100167--32100254
43
2.0
43
84
2
113
29
30
6
32
1.83
32101391--32101425
16
2.1
16
89
5
52
48
5
20
25
1.71
32103097--32103130
16
2.1
16
100
0
68
44
11
23
20
1.84
32104234--32104265
16
2.0
16
100
0
64
62
12
12
12
1.55
32106191--32106221
11
2.8
11
95
0
53
29
3
48
19
1.64
32110275--32110331
18
3.2
18
97
0
105
33
17
22
26
1.96
32110875--32110905
11
2.8
11
95
0
53
29
3
48
19
1.64
32112938--32113202
68
3.9
68
87
3
372
36
21
11
30
1.89
32112904--32113202
136
2.2
136
83
4
379
36
21
12
29
1.90
32114351--32114399
24
2.0
24
100
0
98
22
20
20
36
1.95
32114637--32114895
144
1.8
143
83
7
346
41
10
19
28
1.85
32119728--32119771
4
11.2
4
85
4
63
50
25
2
22
1.61
32119769--32119801
2
16.5
2
100
0
66
51
48
0
0
1.00
32121031--32121091
28
2.2
27
97
2
113
29
1
6
62
1.30
32121499--32121563
28
2.3
27
77
12
69
64
3
0
32
1.09
32121498--32121563
14
4.8
13
70
10
51
65
3
0
31
1.08
32122528--32122572
16
2.8
16
86
10
65
33
2
0
64
1.06
32122319--32122838
282
1.8
281
88
2
794
39
5
5
49
1.50
32133590--32133694
44
2.3
45
83
3
122
31
20
13
35
1.91
32136410--32136458
25
2.0
25
83
0
62
38
0
16
44
1.48
32143797--32143825
15
1.9
15
100
0
58
27
6
13
51
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32144632--32144677
23
2.0
23
84
12
60
45
10
6
36
1.65
32144639--32144683
23
2.0
23
82
8
56
40
13
8
37
1.76
32145062--32145120
24
2.5
24
100
0
118
33
20
15
30
1.93
32145872--32145997
61
2.1
61
98
0
243
39
19
9
30
1.84
32148784--32148968
92
2.0
92
97
0
352
34
14
16
35
1.88
32155065--32155119
21
2.5
22
82
2
58
21
32
29
16
1.95
32156645--32156684
20
2.0
21
85
5
55
40
12
2
45
1.56
32164881--32164961
40
2.0
40
97
0
153
34
12
19
33
1.89
32167863--32167958
48
2.0
47
84
6
122
31
4
6
58
1.42
32168323--32168363
22
1.9
21
85
5
55
65
0
0
34
0.93
32168331--32168381
25
2.1
23
82
13
59
66
3
0
29
1.09
32169188--32169239
20
2.6
20
84
6
61
40
23
1
34
1.66
32170314--32170358
22
2.0
22
91
0
72
48
15
2
33
1.57
32173949--32174034
33
2.6
33
96
1
156
44
9
9
37
1.69
32174123--32174167
22
2.0
22
91
0
72
48
15
2
33
1.57
32178157--32178200
8
5.6
8
94
5
72
25
0
6
68
1.14
32178157--32178255
7
13.6
7
92
3
99
25
7
3
64
1.33
32178157--32178212
8
7.2
8
90
8
62
23
1
5
69
1.18
32179112--32179149
19
2.0
20
94
5
69
26
5
2
65
1.27
32179894--32180002
41
2.7
41
84
2
148
21
22
19
37
1.94
32180034--32180059
12
2.2
12
100
0
52
46
30
15
7
1.74
32180888--32180923
18
2.1
17
89
5
54
55
5
2
36
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32181536--32181569
15
2.1
16
89
10
52
50
2
0
47
1.16
32181597--32181642
23
2.0
23
87
8
67
58
17
6
17
1.59
32183260--32183396
51
2.7
50
71
10
125
43
3
3
49
1.37
32183894--32183950
23
2.5
24
83
11
66
71
8
12
7
1.29
32183894--32183951
24
2.5
22
78
18
55
72
8
12
6
1.28
32184924--32185088
34
4.9
34
94
0
276
26
26
20
26
1.99
32187215--32187337
60
2.0
60
90
3
194
20
17
9
52
1.72
32187510--32187552
3
14.3
3
90
0
68
27
0
4
67
1.10
32190827--32190866
21
1.9
21
84
0
53
45
5
35
15
1.68
32192885--32192980
43
2.3
43
80
8
117
23
19
28
28
1.99
32196675--32196704
10
3.0
10
95
0
51
20
13
0
66
1.24
32205424--32205879
44
10.4
44
82
2
472
30
17
21
29
1.97
32206034--32206087
17
3.2
17
76
5
56
77
3
0
18
0.91
32207007--32207035
13
2.1
14
93
6
51
51
0
3
44
1.18
32207549--32207612
31
2.0
32
85
8
87
45
0
7
46
1.32
32208540--32208583
15
2.9
15
82
0
61
36
2
13
47
1.56
32208954--32209011
23
2.5
23
97
0
107
6
5
43
44
1.53
32209116--32209156
19
2.2
19
87
12
59
46
0
24
29
1.53
32215384--32215442
30
2.0
30
100
0
118
37
0
20
42
1.52
32217992--32218033
22
1.9
22
85
9
59
26
0
4
69
1.08
32218332--32218356
6
4.2
6
100
0
50
68
0
0
32
0.90
32222109--32222164
10
5.7
9
80
16
58
23
5
1
69
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32222109--32222168
20
3.0
19
85
9
84
21
6
1
70
1.20
32222111--32222170
30
2.0
31
84
15
81
21
6
1
70
1.20
32223079--32223111
12
2.8
12
95
0
57
27
9
0
63
1.24
32229404--32229435
16
2.0
16
100
0
64
37
25
6
31
1.81
32229949--32230278
131
2.5
128
86
5
459
29
18
18
33
1.95
32232805--32232955
53
2.8
53
85
4
187
29
27
17
26
1.97
32243939--32244716
264
3.0
265
84
3
946
32
20
23
23
1.98
32244119--32244621
44
11.5
44
61
10
116
31
20
24
24
1.98
32243897--32244718
88
9.3
89
77
5
731
31
20
24
23
1.98
32245394--32245439
18
2.8
16
81
12
65
73
6
0
19
1.04
32247808--32248120
130
2.4
127
88
5
450
28
18
19
33
1.95
32253084--32253126
22
2.0
22
90
0
68
32
6
11
48
1.66
32253461--32253489
11
2.6
11
100
0
58
44
10
6
37
1.65
32255911--32255977
30
2.2
30
86
5
91
38
0
5
55
1.25
32257015--32257049
16
2.2
16
100
0
70
17
22
40
20
1.92
32259219--32259280
30
2.1
30
84
0
79
53
8
0
38
1.31
32260983--32261013
15
2.1
15
100
0
62
45
19
16
19
1.86
32264179--32264242
32
2.0
32
100
0
128
25
12
18
43
1.85
32265381--32265410
6
5.0
6
95
0
51
13
0
20
66
1.24
32277421--32277507
43
2.0
43
84
8
115
25
18
27
28
1.98
32280667--32280704
20
1.9
20
88
0
58
23
5
5
65
1.34
32281417--32281450
17
1.9
18
88
5
52
26
8
8
55
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32287097--32287169
28
2.6
28
91
0
119
26
5
1
67
1.21
32287136--32287189
20
2.5
20
77
19
56
27
3
0
68
1.06
32287092--32287188
19
5.2
19
74
18
71
26
4
1
68
1.14
32289445--32289485
20
2.0
20
100
0
82
48
0
17
34
1.47
32290643--32290692
10
5.0
10
79
13
50
24
6
2
68
1.23
32290662--32290700
20
2.0
20
84
0
51
25
2
5
66
1.25
32292033--32292143
51
2.2
52
91
1
179
27
19
6
45
1.74
32294764--32294862
28
3.4
28
68
22
69
25
28
19
27
1.98
32294760--32294901
60
2.3
60
80
8
155
26
24
19
29
1.98
32294891--32294930
20
2.0
20
90
0
62
27
27
20
25
1.99
32296409--32296443
9
3.8
9
88
3
52
62
0
37
0
0.95
32297710--32297783
33
2.2
33
95
0
130
47
18
4
29
1.67
32297923--32297980
25
2.3
25
87
0
80
43
17
24
15
1.87
32304919--32304984
31
2.1
31
94
0
114
43
10
16
28
1.81
32311518--32311572
23
2.4
23
96
0
101
16
50
0
32
1.45
32313056--32313097
22
1.9
22
90
0
66
47
11
11
28
1.76
32317965--32318006
22
1.9
22
90
0
66
28
11
11
47
1.76
32319095--32319252
10
16.2
10
67
16
55
60
3
1
34
1.23
32319169--32319241
9
7.9
9
76
11
76
64
2
1
31
1.16
32319668--32319708
20
2.0
20
86
13
57
21
2
0
75
0.92
32319693--32319911
28
8.3
27
72
17
140
33
0
1
63
1.11
32319638--32319912
9
30.7
9
69
16
128
33
1
1
62
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32319742--32319825
35
2.4
34
84
11
100
30
1
1
66
1.07
32322995--32323109
44
2.6
45
83
5
144
36
14
21
26
1.93
32330383--32330498
45
2.6
45
84
1
142
36
13
21
28
1.92
32335921--32336024
45
2.3
45
84
0
145
43
15
18
23
1.87
32336229--32336314
40
2.2
40
84
0
109
40
16
9
33
1.80
32337090--32337126
17
2.1
17
90
10
56
16
5
2
75
1.10
32341198--32341251
15
3.5
15
75
9
56
46
9
3
40
1.54
32348567--32348597
16
1.9
16
93
0
53
64
3
0
32
1.09
32348675--32348724
27
1.9
27
88
8
77
40
6
4
50
1.46
32350877--32350927
21
2.4
21
93
0
84
43
7
15
33
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318