Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  137  of  318  ( 38109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42512045--42512208
43
3.8
43
83
2
197
31
22
16
29
1.96
42512639--42512678
16
2.4
16
88
12
55
47
20
0
32
1.50
42518322--42518544
49
4.5
49
76
7
227
30
25
17
26
1.97
42518357--42518549
99
1.9
100
85
3
264
29
25
18
26
1.98
42520922--42520959
19
2.0
19
85
10
51
18
10
0
71
1.14
42529527--42529951
48
8.9
48
78
6
414
25
28
18
26
1.98
42529527--42529952
144
3.0
144
85
4
506
25
28
18
26
1.98
42534664--42534706
21
2.1
20
83
12
52
48
9
2
39
1.48
42535389--42535431
22
2.0
21
82
13
52
0
27
0
72
0.85
42535391--42535432
20
2.1
20
86
8
59
0
26
0
73
0.83
42535499--42535543
15
3.3
14
82
14
58
53
0
2
44
1.13
42535564--42535611
19
2.5
19
86
6
62
35
6
4
54
1.45
42535564--42535615
18
2.7
19
88
5
70
34
7
3
53
1.48
42536009--42536070
30
2.1
30
87
0
88
27
1
9
61
1.37
42536150--42536189
18
2.2
18
86
8
55
17
0
15
67
1.23
42536192--42536225
12
2.8
12
90
0
50
67
0
0
32
0.91
42536755--42536797
21
2.0
22
86
9
61
51
32
9
6
1.61
42541329--42541370
13
3.4
13
83
9
52
35
0
14
50
1.43
42549501--42549542
13
3.4
13
83
9
52
35
0
14
50
1.43
42553918--42553959
12
3.7
12
81
12
61
4
23
45
26
1.73
42554992--42555121
45
2.8
45
79
8
136
30
17
22
29
1.97
42554992--42555106
22
5.1
22
69
15
74
31
17
22
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42561163--42561232
36
1.9
36
97
0
131
28
37
5
28
1.80
42562780--42562824
22
2.0
22
86
0
63
26
15
20
37
1.92
42564002--42564029
13
2.2
13
100
0
56
46
7
0
46
1.30
42564145--42564217
19
3.8
19
66
18
53
58
12
1
27
1.42
42572568--42572637
35
2.0
35
94
0
122
34
14
17
34
1.90
42576820--42576860
6
6.8
6
94
0
73
31
2
34
31
1.71
42581427--42581516
26
3.5
26
76
0
90
27
31
11
30
1.91
42587190--42587237
25
1.9
25
82
0
60
41
14
25
18
1.88
42590797--42590904
26
4.2
26
92
0
180
37
23
7
32
1.82
42592858--42592896
19
2.0
20
85
14
55
41
7
0
51
1.31
42593013--42593037
7
3.6
7
100
0
50
60
0
0
40
0.97
42595043--42595067
12
2.1
12
100
0
50
16
0
0
84
0.63
42604962--42605057
34
2.8
35
76
7
97
43
10
22
22
1.84
42604915--42605057
72
2.0
69
81
9
164
46
9
20
22
1.80
42607689--42607722
9
3.8
9
92
0
50
47
2
11
38
1.55
42607686--42607722
18
2.1
18
94
0
65
48
2
10
37
1.52
42608484--42608677
96
2.0
96
89
0
298
12
34
17
36
1.88
42616472--42616604
62
2.2
60
86
2
185
27
19
31
21
1.97
42630847--42630871
5
5.0
5
100
0
50
40
40
20
0
1.52
42633118--42633188
36
2.0
36
85
0
97
35
8
29
26
1.86
42633417--42633554
60
2.3
59
79
7
136
40
13
18
26
1.88
42650689--42650911
39
5.6
39
84
6
233
25
21
27
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42650689--42650911
79
2.8
80
80
11
253
25
21
27
25
1.99
42650741--42650944
79
2.6
79
80
8
186
26
20
27
25
1.99
42658646--42658868
39
5.7
40
82
8
239
26
21
27
25
1.99
42658646--42658868
79
2.8
80
80
11
244
26
21
27
25
1.99
42658698--42658901
79
2.6
79
82
8
195
26
20
27
25
1.99
42661273--42661330
20
2.9
20
82
10
73
41
22
25
10
1.85
42666812--42666868
23
2.4
24
81
16
66
43
1
17
36
1.60
42666822--42666868
25
2.0
22
84
12
58
44
2
14
38
1.58
42667255--42667283
15
1.9
15
100
0
58
65
0
20
13
1.26
42667304--42667341
19
2.1
19
90
9
62
76
0
23
0
0.79
42667953--42667979
3
9.0
3
100
0
54
33
0
0
66
0.92
42668532--42668578
18
2.6
18
77
12
51
44
10
14
29
1.79
42668568--42668608
18
2.3
19
79
12
50
41
9
9
39
1.71
42669502--42669554
26
2.0
26
96
0
97
24
30
20
24
1.99
42670170--42670205
13
2.8
13
95
4
65
30
13
22
33
1.93
42691687--42691860
86
2.0
86
96
0
321
34
12
9
43
1.75
42693342--42693456
60
1.9
60
82
3
142
42
12
4
40
1.62
42700609--42700638
11
2.6
12
89
10
53
36
16
0
46
1.47
42700973--42701007
15
2.3
15
100
0
70
34
0
5
60
1.21
42701002--42701036
11
3.3
11
92
4
54
62
0
0
37
0.95
42700968--42701020
22
2.3
24
77
9
65
39
0
3
56
1.17
42705163--42705203
19
2.2
18
86
4
55
7
0
34
58
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42708356--42708433
38
2.1
38
97
0
147
34
2
23
39
1.68
42709392--42709430
10
3.9
10
80
12
53
69
2
7
20
1.26
42710096--42710297
99
2.0
99
85
1
271
33
24
12
29
1.92
42711119--42711169
26
2.0
26
100
0
102
15
17
11
54
1.70
42712563--42712730
83
2.0
83
100
0
336
43
7
17
32
1.76
42714814--42714942
50
2.5
50
86
5
170
34
16
22
26
1.95
42714918--42715065
31
4.8
31
87
1
208
27
18
26
27
1.98
42714918--42715057
61
2.3
62
86
1
192
28
17
26
27
1.98
42715083--42715256
47
3.7
48
84
6
194
28
16
26
28
1.97
42717041--42717107
5
12.6
5
82
14
57
76
0
2
20
0.92
42720248--42720287
16
2.5
16
95
0
71
20
35
15
30
1.93
42727797--42727835
9
4.2
9
83
6
51
71
0
2
25
0.98
42730506--42730573
24
2.8
24
97
0
127
27
5
20
45
1.74
42732386--42732566
44
4.2
43
66
14
104
30
18
20
29
1.97
42732688--42732748
25
2.4
25
81
10
63
63
4
0
31
1.15
42737752--42737787
17
2.1
18
89
5
56
25
0
2
72
0.98
42737839--42737929
7
12.6
7
87
8
76
25
7
2
64
1.31
42737876--42737928
21
2.5
21
100
0
106
26
13
0
60
1.33
42737876--42737928
14
3.8
14
100
0
106
26
13
0
60
1.33
42739553--42739746
41
4.8
41
90
3
302
18
25
20
35
1.95
42742708--42742739
15
2.1
15
94
0
55
15
6
9
68
1.36
42744298--42744430
62
2.2
58
81
6
151
42
3
3
51
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42746654--42746894
26
9.5
25
70
12
100
61
4
7
27
1.40
42746654--42746761
50
2.2
51
80
6
123
64
2
7
25
1.33
42746810--42746870
27
2.3
26
84
13
81
62
6
1
29
1.30
42746941--42746986
23
2.0
24
86
4
67
63
2
2
32
1.19
42746976--42747001
12
2.2
12
100
0
52
69
15
0
15
1.20
42747040--42747102
27
2.4
26
78
2
72
60
1
6
31
1.31
42747167--42747220
24
2.2
26
83
6
67
61
1
3
33
1.25
42748137--42748175
19
2.1
19
100
0
78
53
10
20
15
1.70
42748902--42749011
44
2.5
45
79
7
118
28
24
20
26
1.99
42749054--42749684
44
14.0
44
70
12
289
28
22
17
31
1.97
42749273--42749671
139
2.9
140
87
5
514
27
22
18
31
1.97
42749721--42750150
88
4.9
88
81
2
481
26
22
23
27
2.00
42749721--42750150
176
2.5
175
85
1
560
26
22
23
27
2.00
42750178--42750432
131
1.9
131
90
1
404
26
21
21
30
1.98
42750439--42750573
44
3.1
43
68
12
114
19
26
22
31
1.97
42750649--42750772
64
1.9
64
93
0
212
35
14
18
31
1.91
42751884--42751979
50
1.9
50
86
0
138
9
30
15
44
1.78
42756991--42757222
127
1.8
126
81
10
285
37
17
14
30
1.90
42757724--42757825
26
4.0
25
78
5
89
64
1
6
26
1.29
42757947--42758010
25
2.6
26
80
14
82
62
3
6
28
1.34
42758000--42758025
12
2.2
12
100
0
52
69
15
0
15
1.20
42758064--42758126
27
2.4
26
78
2
72
60
1
6
31
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42758191--42758244
24
2.2
26
83
6
67
61
1
3
33
1.25
42759161--42759204
19
2.3
19
88
4
70
54
13
15
15
1.71
42762200--42762377
27
6.6
27
84
5
198
29
28
15
26
1.96
42762221--42762376
82
1.9
81
86
3
224
29
28
15
26
1.96
42762923--42762947
13
1.9
13
100
0
50
32
16
20
32
1.94
42784349--42784526
27
6.6
27
84
5
198
29
28
15
26
1.96
42784370--42784525
82
1.9
81
86
3
224
29
28
15
26
1.96
42785072--42785096
13
1.9
13
100
0
50
32
16
20
32
1.94
42791908--42791955
26
2.0
22
84
15
60
39
6
14
39
1.71
42795281--42795317
18
2.0
19
94
5
67
32
32
8
27
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318