genome.fa.s5.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  119  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37556078--37556262	27	6.9	27	85	2	237	37	8	26	27	1.84
37556078--37556289	54	3.9	53	79	10	166	36	8	25	28	1.86
37557926--37557961	18	2.0	18	88	0	54	69	5	5	19	1.29
37562888--37563041	42	3.7	42	77	10	136	19	22	16	42	1.89
37571520--37571579	30	2.0	31	90	9	97	18	40	0	41	1.50
37571570--37571610	5	8.6	5	86	10	59	14	63	0	21	1.30
37571575--37571621	13	3.5	13	82	8	51	19	63	0	17	1.30
37571970--37572046	38	2.0	38	100	0	154	50	7	23	18	1.72
37573161--37573210	10	5.0	10	81	13	59	24	8	0	68	1.16
37576914--37576968	19	2.8	19	75	25	60	20	3	0	76	0.94
37578047--37578229	96	1.9	97	86	3	262	27	17	24	30	1.97
37579578--37579651	31	2.4	31	95	0	130	21	27	16	35	1.94
37579806--37579913	24	4.4	25	83	4	112	25	21	21	31	1.98
37579806--37579889	26	3.4	25	85	4	116	28	21	19	30	1.97
37579783--37579913	24	5.2	24	80	6	109	25	21	20	32	1.98
37579961--37580008	11	4.6	11	80	12	57	33	18	12	35	1.89
37580046--37580093	25	1.9	25	82	0	60	27	12	22	37	1.90
37583706--37583895	51	3.8	49	83	2	227	28	17	24	29	1.97
37609313--37609373	17	3.8	17	76	20	60	54	3	6	36	1.43
37610427--37610543	30	3.9	30	82	6	132	44	2	22	30	1.66
37610414--37610543	60	2.2	59	83	1	170	43	2	20	33	1.65
37611961--37612161	106	1.9	106	96	0	375	30	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37616733--37616766	10	3.3	10	91	4	50	70	0	0	29	0.87
37616733--37616758	11	2.4	11	100	0	52	76	0	0	23	0.78
37618934--37618974	19	2.1	20	86	13	59	60	2	2	34	1.23
37619050--37619083	13	2.6	14	90	9	54	58	0	0	41	0.98
37619068--37619111	17	2.4	18	92	7	72	61	0	0	38	0.96
37619068--37619121	19	3.0	18	83	5	65	59	0	0	40	0.98
37619087--37619140	26	2.0	27	89	3	83	50	0	0	50	1.00
37619090--37619146	27	2.2	26	83	3	69	52	0	0	47	1.00
37627876--37627913	18	2.2	18	86	9	53	68	5	15	10	1.36
37637818--37637884	28	2.4	27	78	7	71	1	23	0	74	0.90
37637846--37637883	13	2.7	14	84	12	51	2	15	0	81	0.80
37647046--37647086	17	2.4	17	100	0	82	17	43	24	14	1.86
37648539--37648600	27	2.3	26	78	8	70	51	11	0	37	1.38
37649824--37649850	13	2.1	13	100	0	54	14	25	37	22	1.93
37657116--37657158	22	2.0	22	85	0	59	55	9	13	20	1.66
37659425--37659459	18	1.9	18	88	11	54	60	0	11	28	1.32
37666139--37666193	21	2.6	21	97	0	101	18	30	32	18	1.95
37677929--37677954	13	2.0	13	100	0	52	7	0	53	38	1.30
37678207--37678265	30	2.0	30	89	0	91	11	11	40	35	1.79
37678762--37678793	7	4.6	7	92	0	55	56	12	3	28	1.51
37695785--37695819	3	11.7	3	88	11	54	68	0	2	28	1.04
37697397--37697546	44	3.4	44	70	1	149	26	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37697396--37697588	87	2.2	87	98	0	368	24	21	21	32	1.98
37697396--37697682	87	3.3	87	87	3	308	25	21	21	31	1.98
37697468--37697852	44	8.8	45	70	13	227	25	21	21	32	1.98
37697856--37699910	682	3.0	682	99	0	4065	35	19	18	25	1.95
37703237--37703281	11	4.3	10	83	10	63	71	2	0	26	0.98
37703237--37703301	11	6.2	10	72	15	51	72	3	1	23	1.07
37703375--37703400	7	3.7	7	100	0	52	15	0	0	84	0.62
37707950--37708048	3	32.7	3	85	6	119	67	0	32	0	0.91
37707957--37708026	24	2.9	24	97	0	131	72	0	27	0	0.84
37709102--37709129	11	2.5	11	100	0	56	35	0	7	57	1.26
37710742--37710771	6	5.0	6	100	0	60	33	33	33	0	1.58
37714246--37714285	19	2.2	18	86	4	53	67	0	0	32	0.91
37715333--37715358	3	8.7	3	100	0	52	65	0	0	34	0.93
37715971--37716008	17	2.1	19	90	9	62	0	23	0	76	0.79
37718415--37718558	42	3.4	41	82	11	166	32	25	17	24	1.97
37724333--37724357	3	8.3	3	100	0	50	32	0	0	68	0.90
37724575--37724600	13	2.0	13	100	0	52	30	0	0	69	0.89
37731302--37731450	42	3.5	42	77	3	181	28	24	22	25	1.99
37731262--37731540	86	3.2	86	87	1	371	26	20	25	26	1.99
37731344--37731490	44	3.4	44	72	3	154	27	20	23	28	1.99
37731550--37731966	88	4.8	88	86	0	557	28	23	19	29	1.98
37734289--37734313	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37734398--37734429	3	10.7	3	93	0	55	31	3	0	65	1.08
37734535--37734560	13	2.0	13	100	0	52	30	0	0	69	0.89
37734582--37734612	3	10.0	3	93	6	53	35	0	0	64	0.94
37745973--37746092	59	2.0	59	95	0	213	29	19	15	36	1.92
37747078--37747112	6	5.8	6	86	0	52	51	22	25	0	1.48
37747078--37747112	18	1.9	18	100	0	70	51	22	25	0	1.48
37748800--37748927	64	2.0	64	90	0	202	32	17	14	36	1.89
37748952--37749427	45	10.8	45	65	10	192	27	21	25	26	1.99
37748954--37749781	133	6.2	132	89	2	1187	28	20	23	27	1.99
37751223--37751266	23	1.9	23	81	9	54	31	2	2	63	1.19
37751687--37751729	20	2.1	21	86	4	61	25	4	2	67	1.22
37751740--37751782	13	3.2	13	84	12	52	27	4	2	65	1.25
37758636--37758685	25	2.0	25	96	0	91	28	10	20	42	1.84
37767580--37767808	90	2.4	94	78	13	229	30	3	24	41	1.73
37767668--37768025	90	4.1	90	77	9	328	31	5	24	39	1.78
37772648--37772733	31	2.8	30	91	1	136	25	2	11	60	1.43
37772648--37772733	30	2.8	31	92	3	147	25	2	11	60	1.43
37777312--37777418	26	4.2	26	87	2	162	33	6	23	36	1.81
37777312--37777418	51	2.1	52	91	1	171	33	6	23	36	1.81
37778838--37778890	28	1.9	28	85	11	74	52	9	9	28	1.64
37778853--37778933	26	3.0	26	70	12	65	41	14	11	32	1.81
37791373--37791425	29	1.9	27	82	17	65	43	7	11	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37791620--37791695	38	2.0	38	100	0	152	39	10	15	34	1.82
37791825--37791850	2	13.0	2	100	0	52	50	0	0	50	1.00
37794156--37794352	41	4.7	42	81	5	213	19	21	14	44	1.86
37794157--37794369	21	10.3	21	74	5	148	18	22	15	43	1.87
37795885--37795933	19	2.7	18	84	9	55	53	4	14	28	1.59
37796129--37796215	3	28.3	3	73	9	50	64	1	6	27	1.26
37801385--37801429	19	2.2	21	88	11	67	28	8	24	37	1.86
37801385--37801423	19	2.1	19	100	0	78	28	10	25	35	1.89
37803040--37803204	90	1.8	90	81	5	208	34	3	18	43	1.68
37809981--37810015	3	11.7	3	100	0	70	34	0	0	65	0.93
37811081--37811176	34	2.8	34	80	0	102	44	16	8	30	1.77
37811605--37811655	18	2.9	17	82	8	50	35	27	7	29	1.85
37811822--37811862	18	2.3	19	83	12	59	21	36	19	21	1.95
37814466--37814676	94	2.2	93	82	5	246	31	19	18	29	1.96
37814519--37814966	44	10.0	44	71	11	255	32	17	20	29	1.96
37814611--37814737	41	3.0	41	82	7	130	34	19	18	26	1.95
37814519--37814910	179	2.2	180	80	5	416	32	17	19	29	1.95
37815459--37815483	12	2.1	12	100	0	50	52	16	24	8	1.70
37818487--37818555	25	2.6	28	73	21	76	31	2	4	60	1.31
37818557--37818610	24	2.2	24	83	0	63	33	5	1	59	1.31
37818566--37819029	26	18.0	25	70	19	176	29	6	4	59	1.40
37818566--37819029	53	9.0	52	71	10	294	29	6	4	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37818766--37818813	14	3.5	14	75	16	55	35	0	0	64	0.94
37818913--37819014	54	1.9	53	81	2	123	27	5	5	60	1.43
37818886--37819029	79	1.9	75	81	11	175	26	5	5	62	1.39
37827893--37827965	36	2.0	36	97	0	137	39	13	15	31	1.86
37828186--37828244	5	11.0	5	89	7	73	18	0	1	79	0.81
37828184--37828241	23	2.5	24	86	13	79	18	0	1	79	0.82
37832695--37832721	4	6.8	4	100	0	54	77	0	0	22	0.76
37833314--37833373	5	12.0	5	76	13	52	23	0	1	75	0.90
37833312--37833368	30	1.9	30	85	7	80	24	0	1	73	0.92
37840751--37840790	19	2.1	19	86	9	55	57	7	0	35	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318