genome.fa.s5.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Length:  100714657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  163  of  318  ( 38109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51599313--51599565	68	3.9	64	77	10	174	25	28	16	29	1.96
51607656--51607760	6	17.3	6	75	16	101	49	14	17	19	1.79
51607635--51607759	18	6.9	18	72	15	78	49	14	16	19	1.79
51607656--51607781	30	4.2	30	86	4	155	49	13	16	20	1.79
51607715--51607806	25	3.8	24	80	13	116	45	14	19	20	1.85
51608163--51608220	22	2.6	22	86	0	71	32	22	24	20	1.98
51608519--51608582	27	2.4	28	76	7	69	37	26	18	17	1.93
51608562--51608756	27	7.3	27	85	1	230	26	18	18	35	1.95
51608761--51609276	27	19.2	27	81	7	550	40	9	21	28	1.84
51608751--51609275	108	4.9	107	88	3	666	40	9	21	28	1.84
51611292--51611466	6	28.8	6	70	19	114	49	14	16	20	1.80
51611292--51611441	30	5.2	30	77	16	154	50	14	15	20	1.78
51611533--51611588	27	2.1	27	96	0	103	30	46	7	16	1.73
51611611--51611684	27	2.8	27	70	13	64	37	21	21	18	1.94
51611995--51612050	27	2.1	26	90	3	85	37	23	21	17	1.94
51612248--51612435	27	7.0	27	86	2	207	26	19	18	35	1.95
51612248--51612435	54	3.5	54	84	2	234	26	19	18	35	1.95
51612250--51612443	81	2.4	82	84	3	241	27	18	17	36	1.93
51612448--51613073	80	7.8	80	83	7	662	39	8	23	28	1.84
51612448--51613042	27	22.2	27	84	6	710	40	8	23	28	1.84
51612453--51613039	107	5.5	108	86	5	755	40	8	23	28	1.83
51614204--51614290	27	3.2	26	85	3	111	17	19	26	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51624187--51624446	27	9.7	27	82	2	238	41	20	8	29	1.82
51624187--51624391	80	2.5	81	86	0	286	42	18	7	30	1.78
51624187--51624445	134	1.9	134	81	3	306	41	20	8	29	1.81
51624484--51624624	27	5.2	27	83	10	180	34	15	19	29	1.93
51625028--51625076	22	2.2	22	85	7	64	24	30	20	24	1.98
51625464--51625525	25	2.5	25	78	0	61	22	19	9	48	1.78
51625508--51625567	6	9.8	6	78	10	68	16	20	13	50	1.78
51625480--51625562	31	2.7	31	86	0	112	19	20	12	48	1.80
51627436--51627714	27	10.3	27	85	1	274	39	21	7	30	1.82
51627436--51627750	27	11.7	27	81	4	253	39	22	7	31	1.82
51627734--51627929	27	7.3	27	85	0	266	33	17	21	27	1.96
51628221--51628285	22	3.0	22	84	8	87	20	24	23	32	1.98
51628444--51628552	27	4.1	26	85	5	137	18	22	22	36	1.95
51628669--51628736	25	2.7	25	81	0	73	23	13	11	51	1.73
51628692--51628773	31	2.6	31	80	0	101	19	17	13	50	1.78
51628719--51628787	6	11.3	6	73	14	52	17	15	14	52	1.75
51631003--51631114	55	2.0	55	100	0	224	50	8	10	29	1.67
51631092--51631186	15	6.5	15	78	18	110	54	8	0	36	1.31
51631116--51631166	14	3.6	14	75	15	59	52	9	0	37	1.34
51631101--51631181	29	2.8	29	96	0	153	53	8	0	38	1.32
51631096--51631186	29	3.2	28	82	14	123	54	7	0	37	1.29
51631416--51631494	28	2.8	28	74	12	74	56	1	1	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51631655--51631728	13	5.7	13	80	0	76	39	27	8	25	1.84
51634470--51634642	46	3.7	46	77	13	192	23	21	26	28	1.99
51634467--51634637	93	1.8	93	92	0	288	22	21	27	28	1.99
51638712--51638738	7	3.9	7	100	0	54	29	0	55	14	1.40
51643607--51643815	63	3.3	63	80	2	213	24	23	25	25	2.00
51667890--51667922	17	2.0	17	88	5	50	6	12	0	81	0.85
51695441--51695507	35	1.9	34	87	3	98	26	22	19	31	1.98
51697116--51697328	48	4.5	47	77	8	171	22	28	18	30	1.98
51697215--51697377	46	3.5	46	80	12	181	23	30	19	27	1.98
51697158--51697377	94	2.3	94	82	3	264	23	29	20	27	1.98
51697017--51697374	49	7.5	47	75	9	210	24	27	19	28	1.98
51699323--51699387	21	3.4	21	64	33	56	27	20	6	46	1.74
51699734--51699769	18	2.0	18	88	0	54	25	22	13	38	1.91
51709209--51709234	9	2.9	9	100	0	52	57	0	0	42	0.98
51712025--51712200	46	3.8	45	79	12	205	21	21	28	28	1.98
51712022--51712192	93	1.8	93	94	0	306	21	21	29	27	1.99
51715141--51715209	15	4.6	15	87	0	93	13	17	11	57	1.64
51715132--51715219	30	3.0	30	83	8	108	11	17	14	56	1.66
51717612--51717779	46	3.6	46	72	15	157	22	19	27	30	1.98
51724550--51724768	49	4.6	49	70	12	170	24	26	21	27	1.99
51724697--51724910	46	4.5	47	70	13	138	22	25	21	30	1.99
51736484--51736544	32	1.9	32	89	0	95	22	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51741674--51741704	8	3.9	8	95	0	53	38	22	22	16	1.92
51741949--51742433	27	18.0	27	78	6	347	40	18	9	31	1.83
51741957--51742445	81	6.0	80	77	3	390	40	18	9	31	1.83
51742297--51742426	55	2.4	54	83	6	163	41	18	10	30	1.83
51742673--51742763	40	2.2	41	86	5	132	21	20	27	29	1.98
51742903--51742954	22	2.4	22	81	15	72	21	19	19	40	1.92
51743168--51743221	22	2.5	22	78	0	63	18	18	24	38	1.93
51743304--51743344	21	2.0	20	90	4	64	4	7	48	39	1.52
51743777--51743810	17	1.9	18	88	5	52	50	2	11	35	1.54
51747622--51747677	17	3.4	17	76	14	71	66	21	3	8	1.35
51747613--51747679	33	2.0	33	100	0	134	65	17	2	13	1.38
51747612--51747664	16	3.2	16	75	15	63	69	15	1	13	1.27
51747745--51747770	13	2.0	13	100	0	52	15	38	30	15	1.88
51757799--51757841	21	2.1	20	86	4	59	13	41	20	23	1.88
51758937--51759045	24	4.7	23	77	13	107	27	21	18	33	1.96
51762578--51762656	29	2.7	30	82	13	110	29	30	15	25	1.96
51764906--51765104	100	2.0	100	85	2	265	25	16	23	34	1.95
51764909--51765098	49	3.8	49	78	2	200	26	15	23	34	1.95
51771026--51771056	16	1.9	16	100	0	62	32	25	3	38	1.72
51777597--51777652	11	5.5	11	71	16	57	35	12	19	32	1.89
51777586--51777652	20	3.3	20	93	0	116	34	11	20	32	1.90
51777701--51777832	25	5.4	24	92	3	203	29	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51778040--51778102	31	2.0	31	93	0	108	36	15	23	23	1.94
51779653--51779704	25	2.1	25	85	7	70	46	3	26	23	1.69
51781311--51781343	13	2.6	13	90	4	50	48	12	0	39	1.40
51781780--51781819	20	2.0	20	100	0	80	55	20	5	20	1.62
51784271--51784348	6	13.5	6	90	2	63	74	1	8	15	1.13
51784284--51784345	12	5.4	12	94	5	94	72	0	9	17	1.10
51784284--51784345	18	3.6	18	91	8	94	72	0	9	17	1.10
51795575--51795648	35	2.1	35	90	2	114	41	18	6	32	1.77
51799309--51799343	10	3.6	10	92	3	54	62	5	0	31	1.18
51801140--51801179	21	1.9	21	84	0	53	57	12	2	27	1.48
51802176--51802287	29	3.9	29	73	5	93	25	30	16	27	1.96
51802186--51802295	58	1.9	57	81	5	132	25	30	14	30	1.95
51802510--51802552	16	2.7	16	88	0	59	4	16	23	55	1.59
51804924--51805075	42	3.6	41	77	8	155	31	14	22	31	1.94
51805140--51805180	21	2.0	21	85	0	55	51	2	17	29	1.58
51805762--51805830	30	2.3	30	92	0	120	24	34	20	20	1.96
51807391--51807444	24	2.2	24	80	6	65	33	0	46	20	1.51
51809176--51809228	26	2.0	26	85	7	72	5	1	50	41	1.36
51825986--51826020	18	2.0	17	88	5	52	17	22	40	20	1.92
51829304--51829481	40	4.5	40	92	2	261	26	27	22	23	2.00
51835898--51835923	6	4.3	6	100	0	52	53	0	0	46	1.00
51842143--51842349	67	3.2	63	77	9	186	31	16	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51844378--51844423	18	2.5	19	76	20	53	43	13	6	36	1.69
51847325--51847364	18	2.2	18	100	0	80	30	22	15	32	1.94
51852439--51852463	8	3.1	8	100	0	50	40	24	0	36	1.55
51855190--51855222	17	1.9	17	88	11	50	30	18	12	39	1.87
51863949--51863999	25	2.0	25	100	0	102	37	15	23	23	1.93
51868495--51868550	17	3.5	17	72	18	57	41	7	14	37	1.73
51871012--51871037	7	3.7	7	100	0	52	57	0	0	42	0.98
51873568--51873640	10	7.5	10	75	6	51	36	0	0	63	0.95
51873545--51873656	48	2.4	48	95	3	201	42	0	0	57	0.99
51873577--51873635	19	3.2	18	74	9	57	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318