genome.fa.s7.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  10  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016402--3016549	31	4.8	31	88	0	199	25	25	19	29	1.98
3016525--3016664	50	2.8	50	90	1	208	25	23	15	36	1.93
3018732--3018780	24	2.0	24	100	0	98	28	24	8	38	1.84
3018789--3018911	51	2.4	51	90	1	185	28	20	11	39	1.87
3020961--3021044	26	3.2	26	91	0	141	34	5	23	35	1.80
3022825--3023110	136	2.1	137	96	0	529	24	18	24	31	1.98
3025363--3025455	30	3.1	29	85	3	105	27	26	19	25	1.99
3028448--3028495	16	2.8	18	75	15	57	39	0	0	60	0.97
3028597--3028641	22	2.1	22	84	12	58	60	0	4	35	1.17
3028597--3028667	23	3.2	21	77	14	63	54	2	2	39	1.29
3028615--3028686	23	3.3	22	76	5	65	56	2	1	38	1.22
3028626--3028686	21	2.8	22	79	16	65	57	3	0	39	1.15
3028679--3028714	16	2.2	16	90	5	54	80	0	2	16	0.83
3028758--3028821	26	2.4	28	81	7	78	45	1	3	50	1.27
3028758--3028823	27	2.5	26	82	5	78	43	1	3	51	1.26
3028995--3029041	16	2.8	18	75	15	55	40	0	0	59	0.97
3029375--3029426	18	2.9	18	74	5	52	67	1	3	26	1.18
3029380--3029454	38	2.0	36	85	10	98	69	4	5	21	1.25
3029434--3029476	18	2.4	18	76	3	52	74	4	11	9	1.20
3029470--3029494	9	2.8	9	100	0	50	84	0	8	8	0.79
3039651--3039688	18	2.1	19	85	14	53	18	13	7	60	1.56
3040440--3040506	31	2.2	31	86	7	93	22	7	22	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3049100--3049399	149	2.0	149	87	0	429	39	17	16	27	1.90
3050127--3050445	53	6.0	53	95	0	566	39	18	15	26	1.90
3052053--3052117	25	2.5	26	77	5	69	46	0	4	49	1.22
3056795--3056832	19	2.0	19	89	0	58	23	10	0	65	1.23
3058033--3058238	106	1.9	106	91	0	331	39	16	16	26	1.90
3059136--3059181	22	2.1	22	84	8	58	36	2	2	58	1.22
3059300--3059337	20	1.9	20	94	0	67	26	28	15	28	1.96
3059811--3059938	59	2.2	59	81	9	154	42	10	15	30	1.81
3077891--3077956	28	2.4	28	78	14	73	36	3	4	56	1.35
3078815--3078849	2	17.5	2	100	0	70	51	0	0	48	1.00
3087943--3088107	39	4.2	39	82	4	199	23	27	24	24	2.00
3087946--3088107	78	2.1	78	88	2	236	22	27	25	24	2.00
3090089--3090310	110	2.0	110	98	0	426	45	18	15	20	1.85
3095936--3095997	19	3.2	19	95	4	106	37	9	17	35	1.83
3099180--3099236	10	5.5	10	84	12	71	85	0	12	1	0.66
3099180--3099243	14	4.4	14	79	11	67	85	0	12	1	0.66
3100332--3101163	44	18.9	44	71	15	456	29	14	25	29	1.95
3100185--3100541	132	2.7	130	85	3	466	28	14	25	30	1.95
3100333--3101119	176	4.5	176	91	0	1198	29	14	25	29	1.95
3101175--3101254	41	2.0	40	85	2	106	27	13	27	31	1.94
3101310--3101494	44	4.2	44	75	10	180	29	17	25	27	1.97
3101228--3101494	134	2.0	134	90	0	426	31	18	23	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3102065--3102143	19	4.2	19	90	9	126	37	10	16	35	1.82
3102055--3102142	36	2.4	36	80	17	119	38	10	15	35	1.82
3106802--3106844	3	14.3	3	80	0	50	30	0	4	65	1.13
3122962--3123000	21	1.9	20	84	5	51	38	2	10	48	1.51
3123701--3123734	17	2.0	17	88	11	52	52	0	2	44	1.16
3124609--3124653	23	1.9	23	81	4	54	40	2	6	51	1.41
3129763--3130271	253	2.0	253	96	0	928	34	17	21	26	1.96
3141342--3141431	22	4.1	21	72	12	74	55	2	13	28	1.50
3141325--3141425	45	2.3	46	81	11	113	54	1	13	29	1.50
3143692--3143725	17	2.0	17	88	0	50	76	2	20	0	0.92
3147507--3147556	24	2.0	25	84	7	66	34	0	12	54	1.38
3157150--3157257	44	2.4	44	85	3	135	29	24	13	32	1.94
3158855--3159143	46	6.3	46	88	0	391	21	23	15	40	1.91
3159031--3159105	25	3.2	25	64	24	63	18	22	14	44	1.86
3158855--3159603	91	8.0	91	78	11	699	22	23	14	40	1.90
3158860--3159603	137	5.3	138	82	8	897	21	23	14	40	1.90
3159124--3159162	19	2.1	19	100	0	78	20	20	25	33	1.97
3159078--3159207	65	2.0	64	87	1	188	20	23	17	37	1.94
3159033--3159253	110	2.0	110	97	0	415	21	23	15	39	1.92
3159143--3159603	46	10.1	46	88	2	635	22	22	13	40	1.90
3159506--3159581	25	3.2	25	62	19	63	22	18	13	46	1.83
3161739--3161787	3	17.3	3	76	19	52	69	0	2	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3161745--3161783	11	3.5	11	92	0	69	69	0	2	28	1.02
3161746--3161787	19	2.2	19	87	8	59	71	0	2	26	0.98
3161757--3161832	20	3.7	21	77	10	68	59	5	1	34	1.28
3162970--3163044	37	2.0	37	100	0	150	42	13	20	24	1.87
3165675--3165706	14	2.2	15	94	5	57	81	0	18	0	0.70
3181724--3181967	121	2.0	118	94	2	425	39	2	9	48	1.47
3182125--3182155	14	2.2	14	94	0	53	29	0	0	70	0.87
3186991--3187020	14	2.1	14	100	0	60	53	0	33	13	1.40
3188071--3188169	39	2.6	39	77	4	103	53	4	6	36	1.45
3188654--3188714	18	3.3	19	71	17	56	4	6	11	77	1.12
3188694--3188780	16	5.7	16	73	17	69	3	2	20	73	1.09
3188681--3188778	44	2.2	44	85	7	128	3	4	16	76	1.06
3188726--3188761	15	2.3	16	90	4	56	0	5	2	91	0.49
3194397--3194428	2	16.0	2	100	0	64	50	0	0	50	1.00
3198237--3198294	21	2.7	21	79	12	64	50	3	0	46	1.18
3198249--3198290	21	2.0	21	90	4	66	47	2	0	50	1.14
3198619--3198651	2	16.5	2	100	0	66	48	0	0	51	1.00
3202251--3202309	27	2.2	27	100	0	118	40	6	18	33	1.77
3202432--3202537	54	1.9	57	84	9	148	48	5	3	42	1.45
3207251--3207279	14	2.0	15	93	6	51	68	3	0	27	1.05
3207842--3207876	18	1.9	18	88	11	54	40	0	0	60	0.97
3210987--3211021	17	2.1	17	88	0	52	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214089--3214401	157	2.0	157	98	0	608	43	19	14	22	1.87
3217515--3217540	2	13.0	2	100	0	52	50	0	0	50	1.00
3225063--3225102	20	2.0	20	95	0	71	57	5	30	7	1.48
3225066--3225111	20	2.3	20	85	7	58	60	4	28	6	1.40
3226824--3226904	26	3.2	24	74	13	74	45	1	1	51	1.16
3227390--3227448	20	2.9	19	78	14	66	66	6	0	27	1.17
3227402--3227493	22	4.4	21	76	10	73	70	3	2	23	1.13
3229412--3229460	15	3.3	15	78	18	50	24	0	4	71	1.03
3229412--3229463	26	2.0	26	89	10	81	23	0	3	73	1.00
3229412--3229463	25	2.0	25	89	10	79	23	0	3	73	1.00
3233938--3234121	94	2.0	94	90	0	287	45	16	24	13	1.84
3238495--3238550	28	2.0	28	100	0	112	39	17	17	25	1.92
3239937--3239977	20	2.0	20	86	9	57	26	51	9	12	1.70
3243546--3243653	44	2.4	44	87	3	144	29	23	13	33	1.93
3245124--3245228	47	2.2	47	86	3	140	34	27	12	25	1.92
3247906--3248006	28	3.6	27	76	6	103	24	28	18	27	1.98
3247906--3248085	56	3.2	56	82	4	231	25	28	16	28	1.97
3247924--3248085	54	2.9	55	83	5	211	25	29	16	29	1.96
3247935--3248085	28	5.5	28	73	12	132	25	29	15	29	1.96
3250697--3250844	47	3.2	47	80	0	154	31	27	16	25	1.96
3257763--3257800	13	2.6	15	88	12	53	42	2	0	55	1.14
3262660--3262717	28	2.1	28	100	0	116	32	12	13	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266263--3266292	11	2.7	11	100	0	60	0	16	26	56	1.40
3284038--3284088	24	2.1	24	88	0	75	41	9	21	27	1.84
3286224--3286280	17	3.0	19	80	19	66	52	0	0	47	1.00
3287290--3287404	60	1.9	60	81	10	137	46	4	6	41	1.50
3287597--3287637	20	2.0	20	95	0	73	21	4	4	68	1.28
3293609--3293676	33	2.2	30	82	12	75	45	1	22	30	1.61
3295838--3295867	3	10.0	3	100	0	60	33	0	0	66	0.92
3295973--3295997	2	12.5	2	100	0	50	52	0	0	48	1.00
3296133--3296260	3	41.7	3	71	12	73	28	4	3	63	1.30
3296136--3296346	18	11.6	18	68	16	89	27	8	3	61	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328