genome.fa.s7.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  152  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44401644--44401713	35	2.0	35	94	0	122	40	21	12	25	1.89
44406045--44406248	35	5.8	35	79	0	210	28	8	19	42	1.81
44406054--44406248	105	1.9	105	81	6	243	29	9	18	43	1.81
44407046--44407077	2	16.0	2	100	0	64	50	0	0	50	1.00
44433785--44433939	38	3.8	38	70	14	121	29	23	14	32	1.94
44433830--44434043	47	4.7	48	76	12	218	30	22	14	31	1.94
44433792--44433994	85	2.4	85	92	0	343	30	23	14	31	1.95
44433918--44434043	48	2.6	48	87	1	182	30	23	15	29	1.96
44433830--44434070	133	1.8	132	82	0	311	30	22	14	31	1.94
44441164--44441368	40	5.1	40	84	4	211	25	26	22	25	2.00
44449175--44449358	40	4.6	40	85	5	205	25	26	22	25	2.00
44452377--44452509	35	3.8	35	88	0	176	24	8	22	44	1.80
44452388--44452581	70	2.8	70	77	5	178	28	9	19	42	1.82
44458022--44458162	27	5.3	26	83	1	129	41	18	7	32	1.77
44458039--44458190	27	5.7	27	86	0	180	41	19	7	31	1.79
44458033--44458179	54	2.7	54	89	3	208	40	18	7	33	1.78
44458039--44458261	81	2.8	80	77	6	216	39	20	8	31	1.82
44458039--44458261	54	4.2	53	78	6	191	39	20	8	31	1.82
44458174--44458248	27	2.8	27	87	4	107	38	24	10	26	1.88
44458116--44458287	81	2.1	81	80	6	188	37	19	9	33	1.85
44458240--44458531	81	3.6	82	84	5	369	28	22	8	40	1.83
44458240--44458532	27	10.9	27	83	4	331	28	22	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44459769--44459816	25	1.9	25	86	0	69	33	25	16	25	1.96
44459860--44459943	20	4.2	20	95	0	150	34	11	21	32	1.90
44459864--44459938	11	7.4	11	68	17	63	36	13	20	30	1.91
44459989--44460130	24	6.0	24	89	4	200	28	22	21	26	1.99
44459988--44460131	47	3.0	47	89	4	218	29	22	21	26	1.99
44462843--44462973	46	2.8	46	87	0	190	19	17	29	33	1.95
44468054--44468128	37	2.0	37	92	5	125	26	20	13	40	1.89
44474402--44474451	25	2.0	25	88	7	75	48	8	4	40	1.51
44474886--44474918	2	17.0	2	93	6	59	48	0	0	51	1.00
44477588--44477775	40	4.7	40	89	1	270	24	20	28	26	1.99
44477584--44477795	80	2.7	80	86	0	291	24	20	27	26	1.99
44505809--44505868	31	2.0	31	83	9	79	38	5	0	56	1.21
44506249--44506284	2	18.0	2	100	0	72	50	0	0	50	1.00
44506568--44506596	13	2.2	13	100	0	58	0	6	0	93	0.36
44506567--44506599	16	2.0	17	94	5	59	0	9	0	90	0.44
44511092--44511145	22	2.5	22	75	0	63	42	20	22	14	1.88
44513431--44513465	14	2.6	13	86	8	52	45	17	2	34	1.63
44515121--44515172	25	2.0	26	88	3	79	50	46	1	1	1.23
44516286--44516330	6	7.0	7	90	10	62	31	0	0	68	0.89
44516271--44516325	25	2.2	25	87	6	76	30	3	1	63	1.22
44516287--44516330	3	14.0	3	82	17	54	31	0	0	68	0.90
44516358--44516390	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44516357--44516397	10	4.4	9	85	14	57	43	0	2	53	1.13
44516492--44516558	31	2.3	30	82	12	77	38	2	4	53	1.36
44517163--44517199	3	12.3	3	88	0	56	32	5	0	62	1.18
44519540--44519597	24	2.4	24	97	0	107	51	17	5	25	1.65
44519540--44519609	24	2.9	24	91	2	86	54	14	5	25	1.62
44519605--44519638	13	2.6	13	90	9	52	70	0	5	23	1.09
44519700--44519731	14	2.3	14	94	0	55	75	3	0	21	0.95
44519749--44519802	25	2.2	24	87	9	74	70	3	1	24	1.13
44519700--44519811	15	7.3	15	69	25	58	70	3	3	22	1.18
44522239--44522410	93	1.8	93	96	0	317	27	29	21	20	1.98
44522232--44522407	46	3.8	46	79	12	216	28	29	21	20	1.98
44529774--44529945	93	1.8	93	96	0	317	27	29	21	20	1.98
44529767--44529942	46	3.8	46	79	12	216	28	29	21	20	1.98
44531987--44532030	20	2.2	20	100	0	88	31	15	9	43	1.79
44533869--44534031	39	4.2	39	93	0	272	24	32	20	22	1.98
44541778--44541940	39	4.2	39	91	0	263	23	33	20	22	1.97
44545084--44545119	16	2.2	16	90	0	54	25	25	27	22	2.00
44551177--44551224	17	2.8	17	74	0	51	8	10	4	77	1.12
44559439--44559513	6	12.0	6	86	8	105	78	4	1	16	0.96
44559999--44560175	83	2.1	83	96	0	327	26	29	20	23	1.99
44570773--44570996	40	5.6	40	85	6	292	25	25	23	25	2.00
44570773--44570996	83	2.8	79	86	5	297	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44572729--44572775	23	2.0	23	100	0	94	8	25	29	36	1.86
44580869--44580928	30	2.0	30	90	6	95	58	16	15	10	1.63
44580869--44580928	15	4.0	15	80	8	77	58	16	15	10	1.63
44583854--44584024	93	1.8	92	94	1	306	28	29	21	21	1.98
44583847--44584021	46	3.8	46	77	13	198	29	29	20	21	1.98
44583895--44584033	47	3.0	46	75	16	135	29	28	19	23	1.98
44587631--44587856	40	5.7	40	86	4	255	25	26	21	26	2.00
44589645--44589828	40	4.6	39	75	6	138	26	23	27	22	2.00
44589685--44589873	80	2.4	81	77	4	186	23	24	29	22	1.99
44599313--44599539	39	5.7	41	83	11	251	25	26	22	25	2.00
44611401--44611572	93	1.8	93	96	0	317	28	29	21	20	1.98
44611394--44611569	46	3.8	46	79	12	216	29	28	21	20	1.98
44615533--44615590	23	2.4	24	80	5	64	70	1	1	25	1.06
44619826--44619882	25	2.2	27	78	12	66	70	8	8	12	1.35
44621379--44621544	43	3.9	44	79	7	162	29	15	21	33	1.94
44628354--44628413	28	2.1	29	81	9	70	45	3	21	30	1.68
44628910--44629015	43	2.5	42	84	9	135	24	15	25	34	1.94
44628910--44629034	43	2.9	43	82	9	121	25	14	24	35	1.93
44630260--44630430	46	3.7	46	80	4	200	28	20	29	22	1.98
44635237--44635275	19	2.1	19	100	0	78	33	10	35	20	1.86
44641914--44642003	42	2.1	42	81	0	99	48	14	6	30	1.69
44642025--44642064	19	2.2	18	90	4	62	45	12	2	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44643992--44644082	42	2.2	42	85	0	119	49	13	7	29	1.69
44644093--44644132	19	2.2	18	86	4	53	42	12	2	42	1.56
44649781--44649831	25	2.0	25	92	0	84	39	5	17	37	1.74
44649784--44649831	12	3.9	12	75	5	51	39	4	18	37	1.70
44654449--44654499	25	2.0	25	92	0	84	39	5	17	37	1.74
44654452--44654499	12	3.9	12	75	5	51	39	4	18	37	1.70
44658331--44658415	44	1.9	45	90	7	138	32	7	7	52	1.55
44661615--44661658	21	2.1	21	82	0	52	56	4	0	38	1.20
44665101--44665231	29	4.5	29	93	0	208	24	32	15	27	1.95
44665043--44665231	87	2.2	86	80	5	202	24	34	15	24	1.95
44671423--44671483	13	4.7	13	85	0	86	37	29	8	24	1.84
44671420--44671483	26	2.5	26	89	0	110	35	28	7	28	1.85
44689829--44689917	43	2.1	43	93	0	151	30	15	17	35	1.92
44693722--44693873	40	3.8	40	82	8	143	21	26	23	28	1.99
44693722--44693874	80	1.9	80	81	2	182	21	26	23	28	1.99
44693821--44693925	51	2.1	51	92	0	174	25	27	21	24	2.00
44694676--44694701	2	13.0	2	100	0	52	50	0	0	50	1.00
44699496--44699596	43	2.3	43	93	0	166	31	13	19	34	1.91
44711081--44711124	7	6.6	7	94	5	74	15	9	15	59	1.61
44717161--44717191	16	2.0	15	93	6	53	19	6	12	61	1.53
44717382--44717410	7	4.3	7	95	4	51	13	10	13	62	1.55
44722686--44722816	29	4.5	29	97	1	235	24	23	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44722686--44722816	59	2.2	58	95	1	235	24	23	14	37	1.92
44723264--44723291	2	14.0	2	100	0	56	50	0	0	50	1.00
44724135--44724170	18	1.9	18	88	5	54	11	25	0	63	1.27
44726877--44726924	20	2.5	20	86	3	62	64	2	6	27	1.28
44733043--44733095	27	2.0	27	85	7	72	28	20	1	49	1.60
44733810--44733898	44	2.0	44	91	0	142	28	19	15	37	1.92
44741304--44741345	2	21.0	2	100	0	84	50	0	0	50	1.00
44743556--44743645	27	3.2	27	79	7	92	33	24	23	18	1.97
44751343--44751468	40	3.2	39	76	6	121	29	23	25	22	1.99
44763110--44763267	40	4.0	40	79	4	151	26	24	26	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328