genome.fa.s7.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  172  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50749325--50749442	41	3.1	41	60	28	98	32	17	28	21	1.96
50749293--50749456	71	2.3	71	100	0	328	35	17	28	18	1.94
50756033--50756117	29	3.0	29	87	3	84	25	22	15	36	1.93
50756045--50756117	29	2.5	29	97	0	137	23	24	15	36	1.93
50757885--50757954	24	3.0	24	87	4	106	37	1	35	25	1.65
50757880--50757952	23	3.1	23	86	3	101	36	1	36	24	1.64
50759210--50759257	25	1.9	25	91	8	80	37	20	8	33	1.83
50759364--50759476	28	4.1	27	76	11	97	18	21	23	36	1.95
50764286--50764456	93	1.8	93	96	0	315	28	29	21	21	1.98
50764281--50764453	46	3.7	46	80	13	219	28	28	21	21	1.98
50771848--50772018	93	1.8	93	96	0	315	28	29	21	21	1.98
50771843--50772015	46	3.7	46	80	13	219	28	28	21	21	1.98
50773895--50774214	48	6.7	48	80	3	340	27	18	30	23	1.98
50773882--50774214	144	2.3	144	84	3	420	27	18	30	24	1.98
50773899--50774214	96	3.3	96	83	1	375	27	18	30	23	1.98
50780226--50780333	37	2.9	37	90	0	162	25	32	19	23	1.97
50780378--50780761	48	8.0	48	92	0	633	31	26	6	36	1.82
50784218--50784489	40	6.8	40	93	0	445	24	27	22	25	2.00
50787049--50787272	40	5.7	40	86	6	280	23	21	27	27	1.99
50787049--50787272	79	2.8	80	84	6	294	23	21	27	27	1.99
50787049--50787305	79	3.3	79	82	7	238	24	21	27	26	1.99
50794880--50795004	46	2.7	46	92	0	196	20	19	29	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50797508--50797731	39	5.7	40	86	6	280	24	20	27	27	1.99
50797508--50797738	40	5.8	41	84	8	230	24	20	27	27	1.99
50797561--50797764	79	2.6	79	83	5	218	25	20	26	26	1.99
50805270--50805299	14	2.1	15	93	6	53	76	0	3	20	0.92
50810573--50810605	13	2.6	13	90	4	50	48	12	0	39	1.40
50812458--50812490	13	2.3	15	90	10	52	24	0	6	69	1.10
50812571--50812653	33	2.5	32	75	16	80	61	2	0	36	1.09
50820525--50820663	40	3.5	39	86	6	174	24	30	21	23	1.99
50828522--50828659	39	3.5	40	87	3	174	23	29	22	23	1.99
50837507--50837690	40	4.6	39	75	6	138	26	23	27	22	2.00
50837547--50837735	80	2.4	81	77	4	186	23	24	29	22	1.99
50840034--50840178	40	3.6	40	89	0	200	37	26	13	22	1.92
50847061--50847107	23	2.0	23	95	0	85	63	8	10	17	1.49
50849546--50849890	48	7.2	48	83	3	363	27	16	28	26	1.97
50849572--50849890	144	2.2	144	84	3	426	27	16	28	26	1.97
50849627--50849931	144	2.1	143	85	6	404	27	15	29	27	1.96
50849578--50849931	48	7.4	47	80	9	319	28	15	28	27	1.96
50849572--50849927	96	3.7	92	80	10	356	28	16	28	27	1.97
50852584--50852750	43	3.9	42	79	3	174	25	14	26	32	1.95
50858536--50858697	40	4.1	40	80	8	170	24	20	26	28	1.99
50858534--50858688	80	1.9	79	85	3	213	23	20	27	29	1.98
50858925--50858966	22	1.9	22	85	9	59	33	9	14	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50864303--50864358	26	2.2	26	96	0	103	51	8	16	23	1.72
50866528--50866680	39	3.9	40	84	6	206	22	20	28	28	1.99
50866528--50866680	79	1.9	78	88	3	227	22	20	28	28	1.99
50866916--50866957	22	1.9	22	85	9	59	33	9	14	42	1.78
50874260--50874472	46	4.6	47	78	12	160	28	19	28	23	1.98
50881918--50882139	46	4.8	46	76	8	200	28	20	28	22	1.98
50884985--50885140	40	3.9	40	84	3	118	23	25	23	27	2.00
50885024--50885188	79	2.1	81	85	4	219	23	26	23	26	2.00
50885021--50885190	40	4.2	40	84	5	193	24	25	23	26	2.00
50887849--50887886	18	2.0	20	85	10	53	13	5	26	55	1.59
50893578--50893674	48	2.0	48	81	0	113	41	8	15	35	1.77
50893638--50893684	20	2.5	19	89	6	69	40	0	17	42	1.49
50895350--50895385	18	1.9	19	88	5	56	69	0	19	11	1.18
50897154--50897187	15	2.2	16	89	5	52	17	0	0	82	0.67
50901177--50901216	12	3.7	12	78	21	52	35	0	0	65	0.93
50901192--50901233	14	3.1	14	79	6	50	42	0	0	57	0.99
50901395--50901442	16	3.0	16	87	0	60	33	20	2	43	1.64
50907091--50907145	19	3.2	18	76	21	55	52	0	1	45	1.11
50908174--50908325	38	4.0	37	83	6	171	32	21	20	25	1.97
50908174--50908325	76	2.0	76	87	5	218	32	21	20	25	1.97
50913217--50913352	40	3.4	39	83	9	143	22	25	24	28	1.99
50913222--50913400	80	2.2	81	81	6	204	23	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50917452--50917633	49	3.7	49	83	2	247	26	19	24	28	1.99
50917454--50917646	100	1.9	100	93	0	332	27	20	23	28	1.99
50920985--50921166	68	2.7	67	79	5	195	40	18	18	23	1.91
50923339--50923363	5	5.0	5	100	0	50	20	0	0	80	0.72
50924006--50924037	13	2.3	15	89	10	50	46	3	12	37	1.57
50927867--50927902	17	2.1	18	89	5	56	33	2	2	61	1.25
50933627--50933725	9	10.7	9	67	21	53	62	3	3	31	1.25
50935325--50936083	44	17.2	44	79	5	717	29	24	15	30	1.95
50946407--50946574	40	4.2	40	82	1	185	24	26	22	26	2.00
50950635--50950703	15	4.6	15	83	0	84	11	17	13	57	1.64
50950626--50950713	30	3.0	30	81	8	99	10	17	15	56	1.66
50953096--50953268	46	3.8	46	79	14	214	20	21	29	28	1.98
50961953--50962141	29	6.6	29	85	2	89	25	31	15	26	1.96
50961983--50962141	86	1.8	86	86	2	230	26	30	15	27	1.96
50962012--50962141	57	2.3	58	95	1	235	26	28	14	30	1.95
50964822--50964965	39	3.6	39	85	0	171	23	22	31	21	1.98
50974554--50974597	18	2.4	18	96	0	79	61	4	4	29	1.36
50977085--50977229	40	3.6	40	81	2	130	28	23	26	22	1.99
50977124--50977252	40	3.2	39	83	6	143	24	22	27	25	2.00
50979470--50979502	12	2.6	13	85	9	50	45	0	45	9	1.35
50990999--50991131	51	2.6	51	77	2	144	27	20	24	28	1.99
50997206--50997262	17	3.3	17	87	9	80	12	19	43	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50999828--50999877	26	1.9	26	100	0	100	20	16	20	44	1.87
51001255--51001328	27	2.8	26	84	8	87	22	18	17	40	1.91
51003946--51004089	39	3.6	39	87	0	180	22	22	31	22	1.98
51003935--51004089	79	2.0	79	83	5	197	21	21	32	23	1.98
51008695--51008902	40	5.2	40	82	2	224	25	26	22	25	2.00
51014407--51014565	43	3.7	43	75	10	137	28	14	22	34	1.93
51016335--51016369	17	2.0	18	88	5	54	62	2	0	34	1.10
51017789--51017813	13	1.9	13	100	0	50	32	4	24	40	1.73
51018948--51019040	42	2.2	43	84	5	118	26	17	25	30	1.97
51021803--51021883	40	2.1	39	85	2	108	30	29	16	23	1.96
51022941--51023033	27	3.4	27	77	0	78	29	6	23	40	1.79
51023331--51023399	28	2.4	28	87	2	93	26	34	15	23	1.95
51026713--51026930	40	5.6	40	92	4	349	26	22	27	22	1.99
51034750--51034970	40	5.6	40	89	2	313	26	22	27	23	1.99
51043382--51043489	40	2.7	40	83	0	126	22	30	24	23	1.99
51049139--51049218	40	2.0	40	100	0	160	25	22	25	27	2.00
51049360--51049415	26	2.1	26	83	3	67	30	17	19	32	1.95
51054975--51055114	39	3.6	39	83	1	165	27	25	20	27	1.99
51059032--51059238	40	5.2	39	84	6	231	26	27	21	25	1.99
51066694--51066901	40	5.2	40	83	2	231	25	26	22	25	2.00
51076227--51076266	21	2.0	20	85	5	53	42	20	0	37	1.52
51076233--51076289	27	2.1	28	83	9	73	42	19	1	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51083666--51083745	38	2.1	38	88	0	115	35	20	15	30	1.93
51094420--51094603	40	4.6	40	82	6	221	25	23	26	24	2.00
51094420--51094603	80	2.3	80	86	3	246	25	23	26	24	2.00
51096273--51096426	44	3.6	42	75	9	141	31	26	19	22	1.98
51096273--51096429	86	1.8	85	84	9	212	31	26	19	22	1.98
51100212--51100312	28	3.5	28	86	6	114	28	13	27	29	1.95
51100241--51100312	29	2.5	28	91	6	110	29	13	27	29	1.95
51108296--51108396	28	3.5	28	86	6	114	28	13	27	29	1.95
51108325--51108396	29	2.5	28	91	6	110	29	13	27	29	1.95
51115142--51115404	125	2.1	125	80	2	287	28	16	17	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328