genome.fa.s7.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  195  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58163826--58163873	21	2.3	21	96	0	87	41	41	0	16	1.48
58164679--58164725	12	3.9	12	88	0	58	46	12	12	27	1.78
58168089--58168153	29	2.2	29	100	0	130	29	15	27	27	1.96
58179513--58179639	55	2.3	56	82	10	147	35	18	22	22	1.96
58182411--58182457	22	2.1	22	88	7	69	38	31	19	10	1.86
58182858--58183062	41	5.0	41	86	2	279	27	30	20	20	1.98
58184700--58184822	41	3.0	41	89	0	192	26	28	21	22	1.99
58185060--58185456	27	14.7	27	77	4	284	30	9	20	39	1.83
58185170--58185404	107	2.2	108	81	8	273	30	9	20	39	1.85
58185333--58185483	81	1.9	81	83	2	196	28	10	21	39	1.86
58185438--58185502	27	2.4	27	81	0	85	29	21	15	33	1.94
58188207--58188260	22	2.5	22	87	0	81	40	27	20	11	1.86
58188648--58188809	41	4.0	41	84	2	218	26	30	21	20	1.98
58190289--58190580	40	7.3	41	92	3	438	28	26	22	23	1.99
58204738--58204775	20	1.9	20	88	0	58	52	10	2	34	1.50
58205519--58205700	40	4.6	40	90	2	269	26	26	23	23	2.00
58212594--58212775	40	4.6	40	88	2	269	28	25	21	23	1.99
58214771--58215092	27	12.0	27	72	8	154	33	8	17	40	1.80
58214856--58214993	53	2.6	53	86	3	170	34	9	15	39	1.80
58214856--58215065	54	3.9	54	80	4	201	33	8	17	40	1.80
58215022--58215092	26	2.7	27	86	4	99	30	8	18	42	1.80
58215075--58215142	27	2.5	27	82	0	91	29	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58215095--58215154	27	2.2	27	84	0	75	30	23	18	28	1.98
58221281--58221449	55	3.1	53	78	8	187	35	17	24	23	1.95
58231921--58231994	22	3.2	22	70	10	76	28	9	21	40	1.84
58231913--58232009	47	2.1	47	98	0	185	30	8	20	40	1.82
58231913--58231985	22	3.0	26	64	32	70	30	9	21	38	1.86
58233304--58233396	23	4.1	23	75	10	75	26	20	12	39	1.89
58233257--58233393	45	2.9	47	71	13	113	28	21	14	35	1.93
58233738--58233831	31	3.0	31	93	0	170	37	14	14	32	1.88
58233748--58233833	17	5.4	17	63	20	60	36	16	13	33	1.88
58237615--58237806	100	1.9	98	96	2	357	31	8	28	31	1.87
58237615--58237806	49	3.9	49	95	2	357	31	8	28	31	1.87
58237640--58237938	98	3.1	98	81	9	294	32	7	28	31	1.85
58237823--58237952	48	2.7	48	90	2	199	35	7	26	30	1.85
58237992--58238082	37	2.4	37	87	1	119	26	18	27	27	1.98
58246164--58246290	40	3.2	40	86	4	170	25	27	20	25	1.99
58254432--58254614	79	2.3	81	85	7	241	25	27	22	24	2.00
58254411--58254614	40	5.1	40	83	8	247	25	27	22	24	1.99
58255846--58255882	11	2.9	13	88	11	51	0	18	0	81	0.70
58255846--58255884	13	3.2	12	86	13	53	0	20	0	79	0.73
58255798--58255930	63	2.1	63	80	8	146	15	18	11	54	1.71
58258201--58258338	40	3.5	39	79	8	138	22	26	23	27	2.00
58258234--58258342	40	2.7	40	80	5	139	22	25	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58266348--58266497	40	3.8	40	77	12	132	26	24	26	22	2.00
58266387--58266513	40	3.2	40	77	4	132	24	24	28	22	2.00
58274330--58274480	40	3.8	40	77	13	134	27	23	26	22	2.00
58274367--58274496	40	3.2	40	77	4	138	24	23	27	23	2.00
58278111--58278335	124	1.8	124	86	1	326	31	10	23	35	1.88
58278330--58278459	40	3.2	40	83	4	165	22	25	29	23	1.99
58289319--58289353	15	2.3	15	95	0	61	37	25	11	25	1.90
58290318--58290343	13	2.0	13	100	0	52	30	0	7	61	1.24
58291722--58291967	40	6.2	40	94	0	422	23	22	26	28	1.99
58297286--58297348	30	2.2	29	85	5	83	31	7	14	46	1.73
58305957--58306011	27	2.0	27	96	0	101	36	12	23	27	1.91
58307617--58307930	46	6.8	46	77	12	311	22	20	28	28	1.98
58307613--58307784	93	1.8	93	93	0	299	22	21	28	27	1.99
58307756--58307924	93	1.8	93	88	0	257	23	20	27	28	1.98
58307617--58307930	139	2.3	139	93	0	538	22	20	28	28	1.98
58310888--58310931	15	2.9	15	77	12	54	11	15	15	56	1.66
58312895--58313160	46	5.7	46	72	16	208	21	18	29	30	1.97
58312888--58313153	93	2.9	93	89	0	424	21	18	29	30	1.97
58312938--58313105	47	3.6	47	72	13	166	22	17	29	31	1.96
58320730--58320993	46	5.7	46	75	6	176	28	20	27	23	1.99
58320728--58320895	92	1.8	92	83	2	221	29	21	26	22	1.99
58326344--58326370	13	2.1	13	100	0	54	22	37	25	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58331815--58332003	40	4.7	40	89	2	290	24	22	27	25	2.00
58333315--58333485	87	2.0	87	95	0	306	28	15	25	30	1.96
58339796--58339821	11	2.4	11	100	0	52	30	7	26	34	1.85
58339819--58340007	40	4.7	40	84	2	254	26	21	26	25	2.00
58341321--58341481	87	1.9	87	95	0	295	27	16	26	29	1.97
58345113--58345244	60	2.2	60	82	8	162	26	25	19	28	1.99
58345888--58345927	8	5.0	8	90	0	62	5	25	20	50	1.68
58350500--58350549	22	2.3	22	86	3	66	20	34	30	16	1.94
58355385--58355467	22	3.6	23	79	14	91	40	16	24	18	1.90
58355432--58355481	25	2.0	25	92	0	82	42	18	18	22	1.90
58355872--58355898	7	3.9	7	100	0	54	44	11	0	44	1.39
58366003--58366046	21	2.1	21	95	0	79	40	18	2	38	1.63
58366985--58367025	2	20.5	2	100	0	82	51	0	0	48	1.00
58367172--58367230	14	4.2	14	78	6	57	40	13	5	40	1.67
58367172--58367238	29	2.3	28	82	7	80	40	11	4	43	1.62
58369425--58369486	13	4.7	13	76	9	54	33	4	22	38	1.76
58369425--58369486	26	2.4	26	73	10	63	33	4	22	38	1.76
58370141--58370170	13	2.3	13	94	0	51	40	23	6	30	1.80
58370601--58370662	28	2.1	30	82	5	74	46	14	0	38	1.45
58377861--58377947	24	3.6	24	93	0	156	21	16	25	36	1.94
58377861--58377969	48	2.3	48	90	3	166	24	16	23	34	1.95
58384747--58384774	13	2.2	13	100	0	56	64	7	14	14	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58392096--58392140	21	2.0	22	87	12	65	15	33	31	20	1.93
58392107--58392149	21	2.0	21	86	8	61	16	32	30	20	1.95
58394558--58394724	40	4.2	40	78	8	171	26	21	26	25	1.99
58400140--58400269	40	3.3	40	90	6	203	26	26	23	22	2.00
58403528--58403692	40	4.2	39	75	6	147	26	23	27	23	2.00
58403529--58403676	40	3.8	38	77	12	149	26	23	27	22	1.99
58403528--58403692	78	2.1	78	81	7	192	26	23	27	23	2.00
58420820--58420869	3	16.7	3	100	0	100	68	32	0	0	0.90
58421081--58421119	3	13.0	3	94	0	69	66	0	2	30	1.05
58423850--58423945	24	3.8	24	79	15	113	41	15	19	22	1.89
58423846--58423989	28	5.4	28	80	13	171	37	15	23	23	1.93
58423846--58423977	52	2.5	52	95	0	228	38	15	21	23	1.92
58427235--58427262	14	2.0	14	100	0	56	64	14	14	7	1.48
58431702--58431786	43	2.0	43	86	9	120	24	18	29	27	1.98
58434133--58434166	2	17.0	2	100	0	68	50	0	0	50	1.00
58438737--58438769	16	2.1	16	100	0	66	30	6	18	45	1.73
58440650--58440703	28	2.0	28	85	10	76	50	1	14	33	1.54
58446068--58446112	20	2.2	20	84	7	56	51	0	2	46	1.13
58446680--58446720	3	13.7	3	100	0	82	65	0	0	34	0.93
58458216--58458279	27	2.3	27	83	8	74	42	6	6	45	1.54
58462955--58462982	11	2.5	11	100	0	56	82	0	0	17	0.68
58465377--58465413	18	2.1	18	94	0	65	48	8	0	43	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58467761--58467932	49	3.6	48	76	10	149	24	26	20	27	1.99
58467952--58468121	48	3.6	47	74	7	166	23	25	20	31	1.98
58467952--58468166	94	2.3	94	82	1	252	22	26	20	30	1.98
58470973--58471008	18	2.0	18	88	0	54	25	22	13	38	1.91
58473213--58473336	46	2.7	46	87	2	169	29	16	28	26	1.97
58473213--58473389	46	3.8	46	83	3	167	29	18	26	25	1.98
58473400--58473526	49	2.6	50	84	2	159	31	20	25	22	1.98
58477154--58477214	30	2.0	30	83	0	77	31	22	4	40	1.75
58483211--58483527	49	6.7	48	73	9	172	26	29	18	26	1.98
58483211--58483392	98	1.9	97	83	3	240	25	28	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328