genome.fa.s7.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  177  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52494597--52494678	29	2.8	29	98	0	155	25	30	14	29	1.95
52499306--52499445	35	4.1	35	80	14	193	37	20	22	20	1.94
52501477--52501563	39	2.2	39	97	0	165	21	31	19	27	1.98
52505766--52505911	25	5.9	24	75	7	105	29	10	22	37	1.87
52505766--52505923	50	3.2	49	85	3	199	28	10	22	38	1.87
52505786--52505925	25	5.6	25	77	5	149	30	9	22	37	1.86
52505786--52505925	75	1.9	75	86	0	199	30	9	22	37	1.86
52508345--52508546	39	5.1	39	89	1	296	25	31	18	24	1.98
52511841--52511883	22	2.0	22	85	0	59	46	30	0	23	1.52
52512544--52512668	43	2.9	43	88	4	164	34	25	14	25	1.94
52512562--52512678	43	2.7	43	89	0	171	35	25	14	24	1.94
52542593--52542662	35	2.0	35	100	0	140	28	28	20	22	1.98
52546666--52546707	22	1.9	22	90	9	68	57	9	14	19	1.64
52547855--52548015	79	2.0	79	98	0	313	54	12	16	16	1.71
52562342--52562541	53	3.7	53	75	7	152	19	25	20	35	1.95
52564734--52564764	16	2.0	16	93	6	55	80	0	0	19	0.71
52564734--52564764	5	6.0	5	92	7	53	80	0	0	19	0.71
52567903--52567965	32	2.0	32	100	0	126	53	15	12	17	1.72
52569433--52569585	39	3.9	39	85	0	198	24	29	20	25	1.99
52569402--52569582	78	2.3	79	88	1	256	23	28	22	25	1.99
52573737--52573865	42	3.0	42	84	2	168	30	27	13	29	1.94
52578542--52578572	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52587724--52587854	46	2.8	48	79	14	166	22	19	28	29	1.98
52590763--52590842	15	5.4	15	77	7	83	10	18	13	57	1.64
52590754--52590841	30	3.0	30	80	11	92	10	18	15	55	1.68
52593217--52593347	46	2.8	48	79	14	166	22	19	28	29	1.98
52599723--52599886	71	2.3	71	100	0	328	18	28	17	35	1.94
52599723--52599920	71	2.8	70	91	3	258	20	28	17	33	1.95
52603710--52603882	46	3.7	46	75	13	183	21	20	28	28	1.98
52603707--52603877	93	1.8	93	92	0	288	21	21	29	28	1.98
52605792--52605824	16	2.1	16	94	0	57	27	18	33	21	1.96
52611479--52611644	46	3.6	46	71	15	144	22	19	28	30	1.98
52611469--52611639	93	1.8	93	91	2	281	22	20	28	28	1.98
52615616--52615792	46	3.8	46	81	5	205	28	29	20	20	1.98
52615625--52615796	93	1.8	93	91	2	283	27	30	21	20	1.98
52617948--52618020	25	3.2	24	62	22	57	26	13	23	36	1.92
52617937--52618026	44	2.0	44	97	0	171	28	15	23	32	1.95
52623559--52623627	27	2.5	28	95	2	122	27	14	27	30	1.95
52623559--52623639	27	3.0	27	85	8	94	28	14	24	32	1.95
52630674--52630723	19	2.7	19	73	11	50	30	12	10	48	1.73
52632920--52633009	40	2.2	40	86	3	128	25	27	24	22	2.00
52637320--52637448	40	3.2	40	81	5	156	24	28	24	23	1.99
52637320--52637482	40	4.1	40	77	5	136	22	28	24	25	1.99
52640709--52640785	40	1.9	40	84	5	102	18	40	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52643290--52643622	47	7.0	47	93	3	524	34	8	28	29	1.86
52643291--52643622	145	2.3	143	95	1	601	34	8	28	29	1.86
52643614--52643813	48	4.2	48	95	0	355	32	6	29	32	1.83
52643291--52643638	96	3.6	98	86	6	471	33	8	27	29	1.86
52643853--52643943	37	2.4	37	96	1	164	23	18	32	25	1.97
52645849--52646149	40	7.6	40	86	5	317	24	20	28	26	1.99
52649640--52649807	46	3.6	46	79	13	209	20	21	29	28	1.98
52649637--52649807	93	1.8	93	96	0	315	21	21	29	28	1.98
52652758--52652836	15	5.4	15	77	10	83	10	17	13	58	1.63
52652749--52652835	29	3.0	29	81	8	95	10	17	16	56	1.67
52655199--52655374	46	3.8	46	80	12	225	21	21	28	28	1.98
52655196--52655366	93	1.8	93	96	0	315	21	21	29	28	1.98
52658104--52658398	47	6.2	47	92	5	477	34	8	27	29	1.86
52658105--52658429	144	2.2	144	92	3	526	33	8	28	29	1.87
52658103--52658387	97	3.0	95	92	3	493	34	8	28	29	1.86
52658393--52658622	48	4.8	48	94	0	388	32	6	29	31	1.84
52658662--52658752	37	2.4	37	96	1	164	23	18	32	25	1.97
52660655--52660953	40	7.6	40	85	7	308	24	20	28	26	1.99
52660772--52660953	79	2.3	80	93	3	325	24	20	28	26	1.99
52663408--52663605	99	2.0	98	98	1	378	28	9	18	43	1.81
52667208--52667539	47	7.0	47	93	2	531	34	8	28	29	1.86
52667531--52667730	48	4.2	48	95	0	355	32	6	29	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52667209--52667539	144	2.3	143	93	2	574	34	8	27	29	1.86
52667209--52667555	96	3.6	98	87	5	478	34	8	27	29	1.86
52669985--52670022	20	1.9	20	94	0	67	23	23	18	34	1.96
52670040--52670255	46	4.7	46	75	14	169	24	28	18	29	1.98
52680679--52680727	15	3.0	17	73	11	57	34	0	6	59	1.22
52689088--52689155	34	2.0	34	97	0	127	39	29	10	20	1.86
52689643--52689762	26	4.5	26	75	9	100	59	0	8	31	1.33
52689634--52689765	54	2.4	55	78	6	153	57	1	9	31	1.40
52691134--52691163	15	1.9	16	93	6	53	16	6	0	76	0.99
52692142--52692226	44	1.9	44	85	0	116	30	28	15	25	1.96
52693711--52693898	39	4.8	39	87	0	223	23	30	21	23	1.99
52693747--52693899	39	3.9	39	91	0	243	23	31	20	24	1.98
52699704--52699891	39	4.8	39	88	0	223	24	31	21	22	1.98
52699740--52699892	39	3.9	39	92	0	243	24	32	20	23	1.98
52712443--52712539	26	3.6	27	79	5	108	57	1	7	34	1.33
52718231--52718273	17	2.4	18	85	14	54	58	4	2	34	1.32
52723832--52723888	24	2.4	24	82	14	73	45	7	21	26	1.77
52727797--52727968	93	1.8	93	94	0	308	27	30	21	20	1.98
52727789--52727964	46	3.8	46	81	10	214	28	29	21	21	1.98
52730348--52730425	15	5.2	15	78	9	79	56	15	16	11	1.67
52730346--52730425	30	2.7	30	82	7	99	56	15	17	11	1.67
52734547--52734750	80	2.5	79	81	6	214	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52734547--52734750	40	5.1	40	80	7	182	25	22	27	24	2.00
52742651--52742850	39	5.1	40	78	7	169	26	21	27	25	1.99
52742651--52742847	76	2.5	78	78	8	204	26	21	26	25	1.99
52742723--52742833	40	2.8	39	82	5	125	28	24	27	18	1.98
52750690--52750838	40	3.7	40	81	3	165	26	24	26	22	2.00
52752793--52752961	93	1.8	93	90	2	277	28	27	21	22	1.99
52752785--52752960	46	3.8	46	77	5	194	28	27	21	22	1.99
52756900--52757092	96	2.0	97	90	1	307	35	14	18	31	1.91
52760098--52760386	47	6.1	47	89	3	389	32	10	29	26	1.90
52760196--52760270	23	3.2	23	66	23	66	30	10	30	28	1.90
52760360--52760478	46	2.6	46	91	0	193	34	10	31	24	1.88
52760676--52760823	37	4.0	37	93	0	251	22	17	31	28	1.96
52763173--52763312	43	3.3	42	75	13	142	38	15	18	27	1.91
52765271--52765306	17	2.1	18	94	5	65	11	22	47	19	1.80
52767139--52767314	46	3.8	46	80	11	216	21	21	28	28	1.98
52767135--52767306	93	1.8	93	93	2	301	20	21	29	27	1.98
52771135--52771320	80	2.3	81	82	6	218	23	24	28	23	2.00
52771136--52771328	40	4.8	40	78	8	135	23	24	29	22	1.99
52773141--52773180	20	2.0	21	85	5	55	50	2	7	40	1.44
52773448--52773505	24	2.4	24	88	0	80	34	3	25	36	1.73
52775296--52775340	22	2.0	24	82	8	58	35	8	2	53	1.45
52775305--52775348	24	1.9	22	81	9	52	43	4	2	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52776757--52776795	18	2.2	18	85	0	51	35	0	5	58	1.20
52776846--52776881	9	3.6	10	88	11	56	38	0	0	61	0.96
52778613--52778665	18	2.8	19	77	8	54	24	9	5	60	1.49
52782711--52782974	49	5.6	48	73	7	175	23	26	19	29	1.98
52783627--52783669	20	2.3	18	81	14	52	37	20	0	41	1.53
52786472--52786546	38	2.0	38	86	0	105	22	21	25	30	1.99
52786544--52786754	43	4.9	43	93	0	350	12	24	34	29	1.92
52787071--52787178	45	2.5	42	85	8	128	23	24	26	25	2.00
52795316--52795589	137	2.0	137	99	0	539	45	11	14	28	1.79
52802510--52803086	47	12.3	47	95	0	1001	32	9	29	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328