genome.fa.s7.2.7.7.80.10.50.1000.328.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  328  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97315915--97315953	16	2.4	17	91	8	64	48	0	0	51	1.00
97323606--97323744	60	2.3	59	81	9	158	28	20	24	26	1.99
97324350--97324374	2	12.5	2	100	0	50	52	48	0	0	1.00
97326334--97326438	45	2.3	45	85	3	140	42	18	17	21	1.89
97327627--97327688	3	20.7	3	100	0	124	66	0	0	33	0.92
97328578--97328607	15	2.0	15	93	0	51	10	6	10	73	1.25
97329373--97329424	2	26.0	2	100	0	104	50	0	0	50	1.00
97331086--97331132	5	9.2	5	92	2	67	38	0	23	38	1.55
97331541--97331780	45	5.3	45	91	2	347	20	19	20	40	1.92
97331760--97331784	6	4.2	6	100	0	50	16	16	16	52	1.76
97331954--97332131	18	9.9	18	71	16	118	35	12	15	36	1.86
97332027--97332145	54	2.2	55	82	8	138	36	14	14	34	1.86
97332183--97332224	18	2.3	18	87	0	57	38	11	16	33	1.86
97331942--97332224	36	7.6	36	67	13	144	36	13	15	35	1.86
97334937--97335085	74	2.0	74	98	0	289	30	8	10	51	1.64
97336086--97336113	2	14.0	2	100	0	56	50	0	0	50	1.00
97337433--97337493	20	2.9	21	78	14	63	39	0	3	57	1.15
97337455--97337510	29	1.9	29	85	7	78	30	0	3	66	1.09
97337449--97337485	19	1.9	20	88	5	58	37	0	5	56	1.22
97340925--97340954	3	10.0	3	100	0	60	0	33	0	66	0.92
97343002--97343051	26	1.9	26	100	0	100	24	18	18	40	1.91
97345201--97345252	14	3.6	14	76	7	50	46	28	0	25	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97345199--97345252	15	3.7	15	76	14	58	46	27	0	25	1.53
97345797--97345962	36	4.6	36	68	21	91	46	1	0	50	1.16
97345953--97345977	6	4.2	6	100	0	50	52	0	0	48	1.00
97346369--97346412	16	2.8	17	90	10	67	52	0	0	47	1.00
97346662--97346714	20	2.7	20	82	5	54	45	5	0	49	1.26
97359843--97359943	39	2.6	39	93	0	175	13	26	23	35	1.93
97361721--97361785	3	21.7	3	75	6	51	61	3	4	30	1.31
97361717--97361772	21	2.7	21	74	0	67	60	1	5	32	1.29
97361953--97362027	3	25.7	3	72	5	64	58	1	6	33	1.32
97361953--97362018	12	5.6	12	83	7	82	57	1	7	33	1.36
97363452--97363564	45	2.5	44	81	8	122	27	17	19	35	1.94
97363595--97363867	89	3.1	86	69	11	219	28	17	21	32	1.96
97363429--97363876	178	2.5	178	84	0	563	28	17	20	33	1.95
97363847--97364118	143	1.9	143	81	7	329	27	21	18	31	1.97
97364102--97364209	44	2.5	44	83	3	128	30	16	18	34	1.93
97365089--97365241	53	2.9	53	87	3	200	57	5	13	24	1.56
97369880--97369904	5	5.0	5	100	0	50	80	20	0	0	0.72
97371445--97371522	3	26.7	3	71	5	61	57	1	7	33	1.35
97371492--97371543	28	1.9	26	84	7	68	59	1	1	36	1.19
97375454--97375494	16	2.7	16	85	7	50	9	2	9	78	1.06
97375867--97375914	12	3.8	13	78	13	55	29	0	0	70	0.87
97388325--97388351	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97389240--97389303	24	2.7	24	92	0	101	21	15	31	31	1.95
97397428--97397471	2	22.0	2	90	0	70	50	0	47	2	1.13
97410074--97410128	27	2.0	27	100	0	110	29	0	25	45	1.54
97413611--97413662	25	2.1	25	92	0	86	59	1	0	38	1.08
97414935--97414994	10	6.0	10	84	11	70	23	8	1	66	1.28
97422459--97422543	25	3.3	24	76	14	80	61	2	2	34	1.22
97422459--97422557	25	3.8	25	73	11	74	61	3	3	32	1.26
97422474--97422583	52	2.1	54	88	6	163	60	3	1	34	1.25
97427704--97427767	33	1.9	33	93	0	110	35	15	18	29	1.92
97427909--97427946	2	19.0	2	88	0	58	44	0	5	50	1.24
97440127--97440168	20	2.0	20	86	13	59	42	0	19	38	1.51
97440646--97440670	2	12.5	2	100	0	50	52	0	0	48	1.00
97440830--97440974	32	4.5	32	80	10	118	39	12	20	27	1.89
97440859--97440939	32	2.5	32	91	2	126	39	11	18	30	1.86
97441435--97441470	5	7.2	5	100	0	72	41	0	19	38	1.52
97442852--97443011	52	3.1	51	80	8	187	25	15	27	31	1.95
97444511--97444545	18	1.9	18	94	0	61	17	28	37	17	1.92
97445342--97445383	13	3.0	14	83	13	59	21	0	33	45	1.52
97445348--97445391	15	3.1	14	83	12	54	22	2	29	45	1.65
97445397--97445446	18	2.6	19	81	9	57	36	0	28	36	1.58
97446596--97446684	46	1.9	46	100	0	178	28	25	13	32	1.94
97453543--97453650	44	2.4	44	87	3	144	29	23	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97456350--97456457	44	2.4	44	87	3	144	29	23	13	33	1.93
97457765--97457824	28	2.1	28	90	0	93	18	3	25	53	1.60
97457767--97457825	14	4.3	14	77	10	59	20	3	23	52	1.61
97462354--97462404	25	2.0	25	88	7	77	45	9	1	43	1.48
97467005--97467051	13	3.5	13	77	13	51	38	0	8	53	1.32
97468542--97468613	24	2.6	30	72	25	93	26	4	16	52	1.62
97481181--97481230	22	2.3	22	82	6	57	28	10	14	48	1.75
97482317--97482355	19	2.0	21	90	10	64	43	2	0	53	1.14
97488316--97488451	51	2.7	51	75	4	148	41	12	6	39	1.69
97496270--97496310	22	1.9	22	90	5	66	34	4	19	41	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328

The End!