genome.fa.s7.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  139  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40503574--40503794	40	5.6	40	85	8	283	22	22	28	26	1.99
40503574--40503794	80	2.8	79	89	4	322	22	22	28	26	1.99
40506282--40506393	25	4.5	24	81	6	84	32	22	20	25	1.98
40506302--40506408	25	4.3	25	82	3	119	34	18	21	25	1.96
40509262--40509308	22	2.1	22	88	0	67	23	19	42	14	1.88
40521026--40521153	46	2.7	46	83	7	143	25	28	19	26	1.99
40528714--40528889	46	3.8	46	81	10	232	20	21	29	28	1.98
40528710--40528881	93	1.8	93	96	0	317	20	22	30	27	1.98
40530703--40530770	34	2.0	34	100	0	136	52	23	5	17	1.66
40532732--40532807	38	2.0	38	97	0	143	51	7	1	39	1.39
40535689--40535787	28	3.5	29	93	5	159	32	28	12	27	1.92
40537586--40537654	20	3.5	20	76	7	86	66	2	13	17	1.36
40537628--40537662	18	1.9	18	88	0	52	80	0	5	14	0.89
40537732--40537765	18	1.9	17	88	5	50	41	0	0	58	0.98
40546319--40546353	17	2.0	18	88	5	54	65	5	2	25	1.28
40549635--40549851	40	5.5	40	87	3	280	25	27	23	23	2.00
40554773--40554891	61	2.0	61	100	0	238	33	0	23	42	1.54
40563149--40563341	52	3.9	48	80	11	167	30	30	15	23	1.95
40563196--40563358	52	3.1	52	84	4	193	31	29	15	23	1.95
40566354--40566380	13	2.1	13	100	0	54	25	14	22	37	1.93
40569198--40569305	26	4.2	26	96	0	198	30	5	26	37	1.79
40573957--40574020	15	4.1	15	78	11	74	28	0	4	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40577683--40577749	33	2.0	33	97	0	125	20	25	22	31	1.98
40583131--40583218	45	2.0	45	88	0	131	38	21	11	28	1.88
40586738--40586803	25	2.6	25	82	0	78	30	19	21	28	1.98
40593559--40593735	39	4.5	39	93	0	300	46	22	3	28	1.68
40593640--40593706	17	3.7	17	71	19	55	47	23	1	26	1.60
40593768--40593815	22	2.2	22	100	0	96	39	14	20	25	1.91
40596252--40596285	2	17.0	2	100	0	68	50	0	0	50	1.00
40600244--40600280	18	2.1	18	100	0	74	54	8	16	21	1.68
40608296--40608326	10	3.1	10	100	0	62	29	19	29	22	1.98
40609118--40609185	34	2.0	34	82	0	82	47	17	8	26	1.77
40616724--40616756	16	2.1	16	100	0	66	48	27	6	18	1.71
40618195--40618306	29	3.9	28	75	11	102	28	14	31	25	1.95
40621166--40621198	16	2.1	16	94	0	57	48	30	6	15	1.69
40622507--40622536	14	2.1	14	93	0	51	30	13	16	40	1.87
40625559--40625595	2	18.5	2	100	0	74	51	0	0	48	1.00
40628512--40628708	109	1.8	108	80	1	241	34	12	13	40	1.81
40630709--40630885	27	7.0	25	65	18	98	38	24	10	26	1.88
40630584--40630930	153	2.3	153	83	1	444	38	20	10	29	1.87
40630584--40630930	51	6.8	51	84	0	379	38	20	10	29	1.87
40634489--40634533	21	2.1	21	95	0	81	33	6	4	55	1.46
40638071--40638117	21	2.3	20	82	7	60	70	0	0	29	0.88
40638064--40638093	8	3.8	8	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40638064--40638120	29	2.0	29	82	0	69	71	0	0	28	0.86
40641191--40641229	19	2.0	20	95	5	71	82	0	7	10	0.86
40644466--40644492	14	1.9	14	100	0	54	51	0	7	40	1.30
40654285--40654398	43	2.7	42	79	5	131	28	17	26	28	1.98
40655649--40655708	10	6.0	10	72	14	52	65	3	10	21	1.38
40655725--40655749	13	1.9	13	100	0	50	40	16	0	44	1.47
40656318--40656353	15	2.4	15	90	0	54	19	0	0	80	0.71
40656344--40656523	96	1.9	97	89	1	281	30	27	16	26	1.96
40657556--40657604	17	2.9	16	82	8	53	79	0	2	18	0.83
40657556--40657604	8	5.9	8	80	7	53	79	0	2	18	0.83
40660631--40660689	29	2.0	29	100	0	118	33	13	6	45	1.70
40663986--40664037	10	5.1	10	83	2	68	71	1	3	23	1.13
40667987--40668048	3	20.7	3	100	0	124	0	33	0	66	0.92
40669095--40669156	29	2.1	29	84	0	79	53	1	4	40	1.32
40680877--40680919	2	21.5	2	100	0	86	51	0	0	48	1.00
40681662--40681781	29	4.1	29	95	4	222	33	14	20	32	1.92
40681664--40681785	60	2.0	60	100	0	244	33	14	20	31	1.93
40685456--40685502	15	2.8	17	78	18	53	63	0	2	34	1.06
40685468--40685510	22	2.0	22	90	0	68	58	0	4	37	1.19
40686468--40686649	78	2.3	81	83	6	221	24	24	27	23	2.00
40686521--40686649	40	3.3	40	82	9	158	25	25	27	21	2.00
40693679--40693859	39	4.6	40	78	8	167	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40704115--40704186	16	4.6	16	85	1	92	29	22	6	41	1.79
40714219--40714369	68	2.3	64	81	10	162	28	15	29	26	1.96
40714288--40714411	67	1.9	66	85	5	171	28	17	31	22	1.97
40715105--40715150	23	2.0	23	100	0	92	52	8	0	39	1.33
40720498--40720539	21	2.0	22	86	13	61	64	4	0	30	1.14
40730243--40730304	32	1.9	32	96	0	115	38	22	9	29	1.86
40732075--40732103	5	6.0	5	92	8	51	0	17	0	82	0.66
40734113--40734174	29	2.1	29	81	6	70	56	8	3	32	1.44
40738920--40738970	15	3.7	14	70	15	52	52	1	0	45	1.12
40739042--40739071	12	2.5	12	100	0	60	43	0	10	46	1.37
40739205--40739248	19	2.3	19	92	4	70	27	11	11	50	1.72
40740385--40740435	24	2.1	24	96	0	93	37	7	0	54	1.29
40744253--40744279	14	1.9	14	100	0	54	37	14	18	29	1.91
40745249--40745283	16	2.3	15	90	5	52	62	2	2	31	1.24
40745397--40745506	22	5.1	20	69	20	60	58	5	6	30	1.46
40745434--40745504	25	3.0	23	78	9	81	57	5	5	30	1.45
40745520--40745637	25	4.9	25	73	11	95	54	3	5	36	1.42
40746172--40746302	30	4.4	30	94	0	226	19	3	48	27	1.66
40747050--40747112	14	4.5	14	82	7	74	61	4	12	20	1.49
40747069--40747112	13	3.3	13	84	6	61	63	6	13	15	1.49
40747135--40747415	77	3.7	75	91	3	413	35	20	17	25	1.95
40747359--40747470	54	2.1	54	91	0	179	40	16	14	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40747556--40747590	17	2.1	17	89	5	54	65	5	17	11	1.43
40747484--40747742	89	2.9	91	80	11	295	37	18	17	26	1.93
40747834--40747878	14	3.3	14	87	3	65	71	4	8	15	1.28
40747834--40747878	13	3.4	13	84	6	63	71	4	8	15	1.28
40747655--40747950	100	3.0	99	88	4	407	40	17	16	25	1.90
40747869--40748026	73	2.1	74	89	2	246	34	21	16	27	1.95
40747942--40748111	91	1.9	89	89	8	263	35	20	17	27	1.94
40755079--40755112	16	2.2	15	89	5	50	61	2	2	32	1.26
40755227--40755286	23	2.9	20	70	15	59	56	5	6	31	1.47
40755227--40755360	25	5.9	22	72	16	71	56	5	5	32	1.46
40755339--40755404	14	4.7	14	75	18	57	56	1	4	37	1.29
40755263--40755414	25	6.0	26	72	15	95	54	4	6	34	1.47
40755434--40755479	25	1.9	25	86	8	69	60	0	4	34	1.16
40755956--40756100	30	4.8	30	82	1	168	22	3	46	26	1.68
40757581--40757650	27	2.6	27	95	2	122	30	27	14	28	1.95
40764785--40764854	27	2.6	27	93	2	113	30	25	14	30	1.95
40767726--40767768	20	2.2	19	83	4	50	51	6	0	41	1.29
40771242--40771284	22	1.9	23	90	4	70	69	0	2	27	1.00
40771278--40771325	20	2.3	20	83	13	62	41	0	2	56	1.11
40773256--40773284	14	2.1	14	100	0	58	31	13	34	20	1.92
40774811--40774921	56	2.0	56	83	3	143	35	13	15	36	1.87
40777576--40777721	51	2.9	50	84	3	204	28	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40777710--40777868	68	2.4	64	76	11	158	27	27	15	30	1.96
40778529--40778588	30	2.0	30	90	0	93	26	25	8	40	1.84
40778854--40778957	52	2.0	51	92	1	172	45	13	12	28	1.80
40781315--40781352	13	2.8	13	85	14	51	39	0	0	60	0.97
40784831--40784873	13	3.1	14	84	12	54	60	0	0	39	0.97
40795627--40795669	21	2.0	21	100	0	86	4	13	18	62	1.48
40799134--40799158	11	2.3	11	100	0	50	16	0	0	84	0.63
40810284--40810455	27	6.4	27	85	2	220	27	16	16	39	1.90
40810284--40810448	54	3.1	54	90	0	258	27	16	15	39	1.90
40813255--40813298	22	2.0	22	86	0	61	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328