genome.fa.s7.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  118  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33577892--33578322	214	2.0	214	99	0	844	19	17	20	42	1.90
33579769--33579819	19	2.5	20	84	12	61	23	5	1	68	1.22
33580490--33580525	10	3.8	9	89	10	54	75	11	0	13	1.06
33581450--33581486	18	2.0	19	94	5	67	27	0	8	64	1.21
33581452--33581518	18	3.8	17	76	13	64	20	0	8	70	1.14
33581799--33581833	17	2.1	16	89	5	52	45	2	5	45	1.41
33582443--33582485	21	2.0	22	86	13	63	69	0	9	20	1.15
33582674--33582721	21	2.3	21	100	0	96	47	4	6	41	1.48
33582683--33582730	21	2.3	21	88	0	69	56	4	4	35	1.38
33584327--33584406	40	2.0	41	82	2	99	27	15	23	33	1.94
33585006--33585035	15	2.0	15	100	0	60	40	6	26	26	1.81
33585207--33585245	20	2.0	20	85	5	53	28	5	25	41	1.77
33590760--33590947	76	2.5	76	97	0	349	50	8	9	31	1.64
33610247--33610284	15	2.4	16	91	4	60	36	7	0	55	1.29
33617906--33617936	16	1.9	16	93	0	53	48	25	19	6	1.72
33620647--33620693	25	1.9	24	87	12	69	19	8	19	53	1.70
33621133--33621240	54	2.0	54	92	0	180	25	26	14	33	1.95
33626245--33626373	48	2.8	46	81	9	147	33	26	15	24	1.95
33626485--33626542	21	2.7	21	87	12	82	36	20	12	31	1.89
33629943--33630016	8	9.0	8	76	18	64	32	1	2	63	1.17
33629921--33629984	16	3.9	16	82	10	51	23	4	1	70	1.15
33629942--33630007	13	4.8	13	76	18	55	31	0	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33629951--33630008	3	20.7	3	77	19	63	32	0	1	65	1.03
33630187--33630224	19	2.0	20	89	5	60	44	13	2	39	1.57
33637132--33637166	18	2.0	18	88	5	54	5	22	0	71	1.07
33637193--33637271	8	9.4	8	75	20	72	26	1	1	70	1.02
33637211--33637270	3	21.7	3	75	21	60	31	0	1	66	1.01
33637214--33637270	13	4.4	13	76	12	55	31	0	1	66	1.02
33637211--33637271	26	2.3	27	81	15	83	31	0	1	67	1.01
33637450--33637500	20	2.5	20	78	9	59	47	11	1	39	1.52
33638720--33638749	15	2.0	15	93	0	51	50	0	10	40	1.36
33638716--33638778	27	2.3	26	76	10	63	38	0	11	50	1.38
33643322--33643389	35	1.9	35	87	0	100	39	8	23	27	1.84
33658673--33658766	34	2.8	33	85	3	125	40	18	13	27	1.88
33658673--33658837	34	4.9	34	75	5	120	35	17	16	30	1.92
33658712--33658871	68	2.4	67	81	8	155	33	16	17	31	1.93
33658780--33658884	17	6.2	17	71	4	68	32	16	18	33	1.93
33658777--33658876	51	1.9	52	85	2	139	31	16	19	34	1.93
33658744--33658878	68	2.0	68	86	0	189	31	17	18	33	1.94
33659632--33659687	28	2.0	28	96	0	103	41	10	19	28	1.85
33659779--33659807	10	2.9	10	100	0	58	41	0	31	27	1.56
33663814--33663985	47	3.6	49	80	9	185	26	21	16	34	1.95
33663805--33663981	97	1.9	94	83	5	230	26	21	16	35	1.94
33677938--33677962	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33680832--33680885	6	9.0	6	82	8	65	77	3	1	16	1.00
33680812--33680885	18	4.1	17	79	11	69	75	2	2	18	1.04
33683143--33683172	14	2.1	14	93	0	51	80	3	0	16	0.85
33686232--33686269	13	2.9	13	100	0	76	47	7	0	44	1.32
33691770--33691806	13	2.8	13	87	0	56	81	0	18	0	0.70
33692125--33692178	6	9.2	6	77	4	56	50	0	3	46	1.19
33692942--33692976	17	2.0	18	88	5	54	25	5	17	51	1.67
33696569--33696662	33	2.9	33	74	18	99	27	27	21	23	1.99
33696600--33696654	29	1.9	28	88	3	83	25	29	23	21	1.99
33696934--33696985	25	2.1	25	85	3	70	26	19	21	32	1.97
33697190--33697412	27	8.3	27	82	6	213	24	19	18	37	1.94
33697189--33697412	54	4.2	53	85	5	258	24	19	18	37	1.94
33697191--33697384	81	2.4	80	84	0	244	23	21	18	36	1.95
33697370--33697682	27	11.6	27	80	3	283	29	8	21	40	1.82
33697341--33697682	54	6.4	53	80	4	337	28	9	21	40	1.84
33697370--33697735	27	13.6	27	75	11	227	29	8	22	39	1.84
33697370--33697694	81	4.0	81	80	4	352	28	8	22	40	1.84
33697370--33697735	81	4.5	80	79	5	312	29	8	22	39	1.84
33702411--33702474	31	2.1	31	91	2	103	59	12	4	23	1.52
33702504--33702546	22	2.0	22	85	0	59	58	11	11	18	1.63
33702511--33702551	11	3.7	11	80	0	55	56	9	14	19	1.66
33714377--33714418	18	2.4	17	84	11	57	38	14	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33715756--33715799	22	2.0	23	86	13	65	72	2	2	22	1.07
33716392--33716451	23	2.5	24	86	8	77	73	1	5	20	1.11
33716392--33716455	24	2.6	25	82	9	78	73	1	4	20	1.09
33719465--33719497	2	17.5	2	87	12	52	48	0	0	51	1.00
33719454--33719503	8	5.6	9	83	7	50	44	2	2	52	1.24
33731685--33731793	23	4.8	23	74	18	95	37	22	24	15	1.93
33731691--33731793	45	2.3	46	83	8	122	38	22	23	15	1.92
33731667--33731802	23	6.0	22	74	13	82	37	21	23	17	1.94
33739371--33739432	23	2.7	23	85	2	81	38	25	22	12	1.90
33743957--33744030	28	2.6	28	85	4	96	32	24	13	29	1.93
33748870--33749096	111	2.1	110	94	0	400	21	28	25	25	1.99
33748893--33749119	111	2.0	111	88	1	339	22	27	24	24	2.00
33750252--33750339	45	2.0	45	86	0	122	40	21	11	26	1.87
33752180--33752321	76	1.9	76	92	0	239	30	24	19	26	1.98
33765008--33765177	47	3.6	46	83	3	187	34	16	24	24	1.95
33765008--33765187	94	1.9	94	83	2	236	34	15	25	24	1.95
33765857--33765899	21	2.0	21	82	8	52	20	16	16	46	1.84
33786065--33786136	34	2.1	34	97	2	137	27	25	20	26	1.99
33786935--33786960	2	13.0	2	100	0	52	50	0	0	50	1.00
33790902--33790943	22	1.9	22	85	9	59	45	11	0	42	1.41
33790902--33790948	21	2.2	22	81	11	53	44	14	0	40	1.46
33791132--33791171	22	1.9	19	85	14	53	10	22	2	65	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33791326--33791365	3	13.3	3	94	0	71	65	0	0	35	0.93
33801846--33801912	10	6.6	10	79	6	73	37	10	19	32	1.86
33801846--33801912	21	3.3	20	83	4	73	37	10	19	32	1.86
33802983--33803017	2	17.5	2	100	0	70	51	0	0	48	1.00
33803933--33804003	35	2.0	35	100	0	142	32	33	8	25	1.86
33810508--33810671	71	2.3	71	98	0	319	35	17	27	19	1.94
33818485--33818609	46	2.7	45	80	12	139	27	19	28	24	1.98
33820413--33820622	40	5.2	40	88	2	305	21	28	24	25	1.99
33828546--33828755	40	5.2	40	88	2	305	21	28	24	25	1.99
33838948--33839157	40	5.2	40	88	2	305	21	28	24	25	1.99
33849352--33849561	40	5.2	40	88	2	305	21	28	24	25	1.99
33859614--33859676	28	2.2	28	80	5	74	52	20	3	23	1.61
33867857--33867916	27	2.2	27	96	3	111	40	25	16	18	1.91
33872609--33872665	28	2.0	29	82	3	71	40	3	24	31	1.72
33873421--33873501	33	2.5	33	93	0	135	27	25	20	25	1.99
33881200--33881277	33	2.4	33	88	0	111	28	24	19	28	1.98
33881294--33881334	21	1.9	22	90	5	66	39	48	4	7	1.52
33887267--33887312	22	2.1	22	88	8	67	39	4	8	47	1.54
33890176--33890214	19	2.0	21	85	10	55	38	0	12	48	1.42
33892085--33892120	18	1.9	19	88	5	56	52	2	13	30	1.55
33896701--33896744	18	2.4	18	92	0	70	31	43	9	15	1.79
33899049--33899106	30	1.9	30	83	13	75	24	31	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33906538--33906577	21	1.9	21	85	10	55	7	25	0	67	1.16
33910013--33910049	9	4.1	9	85	0	56	29	8	13	48	1.71
33910099--33910131	9	3.7	9	91	0	57	39	24	12	24	1.89
33910099--33910133	18	1.9	18	100	0	70	37	22	11	28	1.89
33914841--33914884	21	2.1	21	95	0	79	29	2	25	43	1.67
33927836--33927906	26	2.7	26	82	4	81	69	0	1	29	0.98
33935463--33935502	19	2.2	18	90	4	62	60	0	0	40	0.97
33939207--33939253	17	2.6	19	83	13	71	36	36	0	27	1.57
33945762--33945795	17	2.0	17	100	0	68	35	17	11	35	1.87
33952042--33952185	55	2.6	55	83	6	193	25	29	27	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328