genome.fa.s7.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  153  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44763110--44763297	80	2.3	80	79	12	206	26	23	27	22	2.00
44771180--44771337	40	4.0	40	79	4	151	26	24	26	22	2.00
44771180--44771367	80	2.3	80	79	12	206	26	23	27	22	2.00
44774507--44774596	27	3.2	27	76	7	83	32	24	24	18	1.97
44778230--44778361	29	4.6	29	82	1	140	24	16	33	25	1.96
44784981--44785164	40	4.6	39	75	6	138	26	23	27	22	2.00
44785021--44785209	80	2.4	81	77	4	186	23	24	29	22	1.99
44787608--44787648	16	2.5	17	80	11	50	53	4	9	31	1.55
44795274--44795374	50	2.0	50	96	0	184	30	14	26	27	1.95
44796591--44796692	43	2.4	43	80	12	104	28	17	24	29	1.97
44805938--44805986	19	2.5	19	78	12	55	73	6	4	16	1.19
44806141--44806180	13	3.1	13	79	13	55	57	0	42	0	0.98
44812158--44812245	31	2.9	30	84	5	90	40	14	9	35	1.78
44812187--44812267	31	2.6	31	92	0	135	45	12	7	34	1.70
44812294--44812396	50	2.1	50	98	0	197	36	11	12	38	1.80
44812779--44812876	17	5.8	17	68	19	62	39	4	3	53	1.36
44812849--44812964	61	1.9	58	87	5	169	42	5	1	50	1.34
44819895--44819964	28	2.5	28	88	0	95	34	8	8	48	1.64
44820275--44820385	36	3.1	35	78	7	100	27	7	18	46	1.75
44821097--44821134	14	2.9	13	81	11	51	18	13	10	57	1.63
44821202--44821247	23	2.0	23	100	0	92	34	8	17	39	1.80
44826197--44828340	4	537.2	4	89	1	2973	45	25	3	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44834849--44834892	20	2.3	19	85	14	56	50	4	0	45	1.22
44835904--44835935	17	1.9	16	93	6	55	25	6	0	68	1.12
44836485--44836617	51	2.7	51	75	3	137	39	6	12	41	1.69
44838302--44838591	96	3.0	96	90	1	429	35	17	34	12	1.88
44839570--44839662	14	5.3	19	62	27	62	40	11	8	38	1.73
44839569--44839670	34	3.0	34	100	0	204	41	11	8	38	1.73
44839498--44839609	51	2.2	51	80	3	120	41	6	11	40	1.66
44839581--44839673	19	5.3	19	62	27	62	39	11	8	39	1.73
44841285--44841339	21	2.6	21	79	0	56	27	9	32	30	1.88
44841534--44841609	35	2.2	35	83	9	93	53	5	0	40	1.23
44841642--44841680	18	2.2	18	86	4	53	51	0	2	46	1.14
44850442--44850488	18	2.7	18	77	16	53	53	0	8	38	1.32
44855792--44855840	25	1.9	26	84	12	66	42	2	6	48	1.39
44855763--44855959	62	3.0	67	76	17	232	42	4	4	48	1.42
44857251--44857428	40	4.4	40	90	0	275	30	29	22	17	1.97
44860670--44860777	26	4.2	26	93	0	189	32	7	24	36	1.83
44862562--44862848	137	2.1	137	98	0	556	24	19	25	31	1.98
44864698--44864744	24	2.0	24	83	8	60	21	25	27	25	1.99
44867841--44867946	25	4.2	26	89	3	171	32	6	24	36	1.81
44867841--44867946	51	2.1	51	92	3	178	32	6	24	36	1.81
44869727--44870013	137	2.1	137	97	0	538	24	18	25	31	1.98
44871783--44871831	25	1.9	26	88	12	75	24	2	4	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44871781--44871833	19	2.8	18	78	21	56	24	1	5	67	1.22
44871783--44871837	25	2.2	26	84	15	71	25	1	5	67	1.22
44873283--44873330	25	2.0	24	83	4	60	16	12	2	68	1.29
44875581--44875712	29	4.5	29	97	1	246	24	24	14	37	1.92
44875581--44875712	59	2.3	59	97	1	248	24	24	14	37	1.92
44875581--44875742	59	2.7	60	89	4	188	25	24	13	35	1.92
44877011--44877046	18	1.9	18	88	5	54	11	25	0	63	1.27
44883261--44883392	29	4.5	29	97	1	246	24	24	14	37	1.92
44883261--44883392	59	2.3	59	97	1	248	24	24	14	37	1.92
44884690--44884725	18	1.9	18	88	5	54	11	25	0	63	1.27
44887472--44887622	40	3.8	40	79	6	155	26	23	27	22	2.00
44887509--44887638	40	3.2	40	81	2	163	23	23	28	24	2.00
44895483--44895633	40	3.8	40	77	13	141	25	24	27	22	2.00
44895520--44895649	40	3.2	40	81	2	163	23	23	28	24	2.00
44901157--44901242	31	2.8	31	91	1	138	25	25	16	32	1.96
44901460--44901555	26	3.8	26	90	5	144	26	22	25	26	2.00
44909887--44910025	45	3.2	42	81	8	156	30	25	17	27	1.97
44909869--44910028	45	3.7	42	79	5	142	29	26	18	25	1.98
44910542--44910601	29	2.1	28	81	9	68	26	10	3	60	1.45
44912674--44912841	40	4.2	40	78	3	178	25	21	26	26	1.99
44912674--44912841	80	2.1	80	82	3	196	25	21	26	26	1.99
44919224--44919324	28	3.5	28	86	6	114	29	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44926562--44926597	18	1.9	18	88	5	54	11	25	0	63	1.27
44932819--44932950	29	4.5	29	97	1	246	24	24	14	37	1.92
44932819--44932950	59	2.3	59	97	1	248	24	24	14	37	1.92
44934249--44934284	18	1.9	18	88	5	54	11	25	0	63	1.27
44943011--44943186	47	3.8	47	79	13	220	24	30	17	27	1.97
44943012--44943180	92	1.8	93	89	6	272	24	30	17	27	1.97
44945389--44945461	32	2.3	31	95	4	128	31	9	23	35	1.87
44945402--44945478	32	2.4	32	86	4	102	29	10	23	36	1.88
44951574--44951638	26	2.5	26	78	16	73	67	1	7	23	1.25
44951627--44951665	6	6.5	6	81	0	51	76	0	7	15	0.99
44956528--44956603	32	2.4	32	95	0	134	28	9	23	38	1.86
44964555--44964734	47	3.9	47	73	12	165	24	28	16	30	1.97
44967855--44967978	45	2.8	45	81	0	149	42	15	18	23	1.88
44967946--44968044	45	2.2	45	83	5	128	40	16	19	24	1.91
44973771--44973850	26	3.2	26	66	20	80	38	13	7	40	1.73
44973770--44973870	48	2.1	48	100	0	202	41	11	7	38	1.71
44974212--44974267	19	3.0	19	72	12	53	60	1	0	37	1.07
44978506--44978619	53	2.2	53	100	0	228	38	15	9	35	1.81
44978859--44978891	14	2.3	15	94	5	59	60	12	15	12	1.59
44981881--44981943	32	2.0	30	87	6	90	25	3	12	58	1.49
44982049--44982076	11	2.5	11	100	0	56	75	0	0	25	0.81
44985844--44986017	46	3.8	46	77	14	196	29	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44985852--44986021	92	1.8	93	92	1	288	28	30	20	20	1.98
44990686--44990717	16	2.0	16	93	0	55	40	40	6	12	1.68
44990753--44990810	22	2.6	22	88	0	80	31	51	3	13	1.58
44991303--44991394	29	3.2	29	95	0	157	5	41	41	11	1.65
45006878--45007004	41	3.0	41	85	5	157	29	25	13	32	1.93
45006947--45007052	49	2.2	48	84	3	131	33	26	13	27	1.93
45007152--45007269	31	3.8	31	84	2	139	27	27	17	27	1.98
45007245--45007421	50	3.5	50	88	0	264	25	21	15	36	1.93
45011454--45011485	3	10.7	3	100	0	64	31	0	0	68	0.90
45023119--45023158	20	2.1	19	85	4	53	32	0	12	55	1.38
45023314--45023351	16	2.4	16	90	0	58	28	7	26	36	1.84
45023371--45023407	19	1.9	19	88	0	56	40	2	16	40	1.62
45026403--45026634	46	5.0	46	88	1	295	38	13	24	22	1.91
45033493--45033589	40	2.4	40	82	3	124	38	20	17	23	1.93
45033776--45033865	41	2.2	41	83	0	108	27	23	22	26	1.99
45034134--45034270	7	19.4	7	69	10	73	24	1	26	48	1.60
45034293--45034339	7	6.7	7	87	0	58	19	2	51	27	1.58
45034290--45034330	21	2.0	21	95	0	73	21	2	51	24	1.60
45034373--45034456	7	11.7	7	71	8	62	25	1	34	39	1.64
45034371--45034456	29	3.0	27	83	6	91	25	1	34	38	1.64
45034607--45034665	15	3.8	15	72	24	59	49	8	1	40	1.43
45034615--45034687	32	2.3	32	92	2	121	46	9	2	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45036291--45036331	15	2.7	16	82	17	52	70	0	2	26	0.99
45036302--45036349	17	2.8	17	81	18	55	68	2	4	25	1.18
45036292--45036366	16	4.3	19	78	20	60	66	1	4	28	1.17
45036322--45036366	19	2.4	20	85	10	60	64	2	4	28	1.25
45036361--45036402	18	2.3	19	88	8	61	71	4	2	21	1.16
45036363--45036403	19	2.2	18	86	4	55	73	4	2	19	1.13
45042711--45042781	34	2.1	34	100	0	142	35	16	18	29	1.93
45042946--45043025	38	2.1	38	95	0	142	41	16	12	30	1.85
45043446--45043500	17	3.3	16	76	16	51	30	3	3	61	1.30
45043454--45043507	9	6.3	9	72	20	53	31	1	1	64	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328