genome.fa.s7.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  169  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49806580--49806623	22	2.0	21	83	16	54	31	18	13	36	1.90
49814123--49814166	22	2.0	22	86	8	63	34	15	13	36	1.87
49817611--49817655	16	2.8	16	83	13	56	75	4	4	15	1.12
49823708--49823788	6	13.7	6	75	12	78	79	1	3	16	0.95
49823727--49823791	5	12.4	5	81	18	71	78	0	3	18	0.88
49831058--49831090	13	2.3	15	90	10	52	24	0	6	69	1.10
49831165--49831224	26	2.3	25	80	5	66	58	1	0	40	1.08
49831766--49831801	2	18.0	2	94	0	63	52	0	0	47	1.00
49832544--49832574	9	3.4	9	95	0	53	48	9	9	32	1.69
49837508--49837577	27	2.5	28	88	2	106	28	14	25	31	1.95
49837508--49837589	27	3.0	27	80	8	103	29	13	23	34	1.93
49845441--49845510	27	2.5	28	88	2	106	28	14	25	31	1.95
49845441--49845522	27	3.0	27	80	8	103	29	13	23	34	1.93
49853028--49853157	47	2.8	47	87	0	179	33	28	14	23	1.94
49857248--49857275	14	2.0	14	100	0	56	50	7	0	42	1.30
49857750--49857819	27	2.5	28	97	2	133	28	12	27	31	1.93
49862594--49862636	19	2.3	19	96	4	79	25	18	13	41	1.88
49864559--49864756	71	2.8	70	92	3	294	33	17	28	20	1.95
49864625--49864742	41	3.1	41	60	28	98	32	17	28	21	1.96
49864593--49864756	71	2.3	71	100	0	328	35	17	28	18	1.94
49868199--49868321	56	2.2	56	91	0	201	30	15	21	32	1.94
49868508--49868538	16	1.9	16	93	0	53	41	6	16	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49874106--49874278	46	3.7	46	77	4	186	21	18	29	30	1.97
49874099--49874270	93	1.8	93	92	0	290	21	19	29	29	1.98
49874815--49874843	15	1.9	15	100	0	58	41	17	6	34	1.76
49883724--49883831	27	4.0	26	82	5	108	19	22	21	37	1.95
49883949--49883992	6	7.3	6	80	10	54	18	15	13	52	1.75
49885105--49885227	42	2.9	42	74	2	129	25	17	25	31	1.97
49885066--49885222	43	3.7	43	72	10	142	25	17	25	31	1.97
49905521--49905580	30	2.0	30	100	0	120	30	3	20	46	1.66
49907824--49907999	50	3.5	49	78	7	167	29	27	17	25	1.98
49907824--49908010	101	1.9	99	83	4	241	28	28	17	25	1.98
49915282--49915470	55	3.5	53	82	5	227	21	24	17	35	1.95
49915282--49915484	109	1.9	108	86	3	291	22	25	16	35	1.94
49915457--49915578	47	2.6	46	90	2	181	27	23	13	36	1.92
49916248--49916305	30	1.9	31	89	3	91	29	25	6	37	1.82
49923412--49923494	43	1.9	43	85	0	112	25	18	27	28	1.98
49925552--49925669	37	3.1	38	87	6	166	25	33	22	19	1.97
49929043--49929160	40	3.0	40	91	0	191	21	17	30	30	1.96
49936007--49936075	28	2.5	28	95	2	122	18	10	27	43	1.82
49937703--49937740	20	1.9	20	88	0	58	52	10	2	34	1.50
49938430--49938482	25	2.1	25	85	0	70	26	33	0	39	1.57
49943786--49943836	27	1.9	26	88	4	75	43	7	9	39	1.67
49944396--49944434	19	2.1	19	100	0	78	20	20	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49946296--49946345	21	2.4	21	86	0	73	22	26	28	24	1.99
49947129--49947180	25	2.1	24	82	10	61	15	21	23	40	1.91
49952767--49952899	46	2.9	47	84	7	175	32	26	21	20	1.97
49952767--49952944	47	3.8	47	79	6	175	32	27	19	20	1.97
49956944--49957154	27	7.8	27	89	2	271	28	23	7	39	1.82
49956940--49957154	54	4.0	54	89	1	306	29	23	7	39	1.83
49956944--49957154	81	2.6	81	89	1	307	28	23	7	39	1.82
49957153--49957363	27	7.8	27	89	4	302	41	20	7	30	1.80
49957375--49957426	27	1.9	27	84	7	70	44	13	9	32	1.76
49958147--49958194	25	1.9	25	86	0	69	35	22	14	27	1.93
49958306--49958428	52	2.4	51	90	5	196	26	22	21	28	1.99
49958306--49958428	26	4.8	26	86	5	162	26	22	21	28	1.99
49958573--49958664	42	2.2	42	92	0	148	27	11	20	40	1.88
49958688--49958797	31	3.5	31	93	0	175	29	17	23	30	1.97
49963607--49963648	17	2.4	18	84	11	52	23	0	33	42	1.55
49967169--49967350	78	2.3	81	86	6	257	25	27	22	24	2.00
49967167--49967350	40	4.7	40	86	8	252	25	27	22	24	2.00
49969585--49969667	41	2.0	41	100	0	166	33	14	18	33	1.91
49971208--49971310	29	3.6	28	81	5	116	21	16	33	29	1.95
49978379--49978560	78	2.3	81	86	6	257	25	27	22	24	2.00
49978377--49978560	40	4.7	40	86	8	252	25	27	22	24	2.00
49979823--49979861	19	2.0	20	85	5	53	2	20	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49982491--49982548	6	9.5	6	81	3	53	12	8	3	75	1.14
49982522--49982565	18	2.5	17	82	17	54	6	15	2	75	1.12
49983190--49983434	103	2.4	103	81	6	271	23	20	31	24	1.98
49985001--49985132	70	1.9	66	83	8	167	30	12	13	43	1.80
49993398--49993509	27	4.2	26	85	7	143	37	23	24	15	1.93
49993398--49993509	54	2.1	54	88	3	163	37	23	24	15	1.93
49998777--49998861	44	1.9	44	83	4	109	37	15	22	24	1.93
49999000--49999118	44	2.6	47	90	8	199	36	13	24	26	1.92
49999097--49999304	54	3.9	54	82	4	249	34	17	26	21	1.95
49999105--49999318	108	2.0	108	88	1	322	35	16	26	20	1.94
49999407--49999439	16	2.0	17	94	5	59	36	3	24	36	1.71
50002673--50002851	38	4.7	38	82	2	223	29	23	22	24	1.99
50002681--50002851	78	2.2	76	83	4	225	30	22	21	25	1.98
50007419--50007450	17	1.9	16	93	6	55	40	12	15	31	1.85
50011325--50011648	47	6.9	47	92	0	522	32	9	30	27	1.88
50013063--50013225	40	4.1	40	88	1	238	24	22	28	24	1.99
50015821--50016192	47	7.9	47	92	0	600	33	9	30	27	1.88
50018769--50018815	21	2.2	21	84	3	58	72	2	14	10	1.21
50019046--50019070	7	3.6	7	100	0	50	12	0	28	60	1.32
50019944--50020013	27	2.5	28	90	2	115	25	12	28	32	1.93
50023045--50023209	40	4.2	40	85	2	208	24	21	28	25	1.99
50026571--50026611	19	2.1	20	86	4	57	51	7	9	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50031602--50031763	71	2.3	72	86	3	238	36	19	26	17	1.94
50036370--50036466	12	8.4	12	69	22	50	42	4	2	51	1.32
50043905--50044032	40	3.2	40	83	5	159	29	20	21	28	1.98
50044434--50044633	7	27.4	7	68	9	78	25	0	27	47	1.52
50044471--50044571	29	3.2	29	72	20	103	29	0	23	46	1.53
50044440--50044639	22	9.0	22	70	11	97	24	0	28	47	1.53
50044606--50044680	22	3.4	22	84	12	84	18	0	41	40	1.51
50044617--50044692	7	10.4	7	75	8	53	19	0	42	38	1.52
50044628--50044728	22	4.5	22	77	8	98	21	1	44	31	1.64
50048788--50048836	18	2.7	18	77	0	53	44	26	2	26	1.65
50054330--50054369	21	1.9	21	94	0	71	42	17	25	15	1.88
50054754--50055024	43	6.3	43	80	5	228	26	24	19	29	1.98
50054730--50054917	86	2.2	85	82	5	227	29	25	20	25	1.99
50055487--50055547	30	2.0	30	100	0	122	47	13	3	36	1.59
50058576--50058627	25	2.1	25	85	3	70	30	17	19	32	1.95
50058583--50058652	25	2.8	25	86	0	86	27	21	22	28	1.99
50058863--50059101	27	8.9	27	92	0	354	24	22	19	33	1.97
50059101--50059293	27	7.2	27	86	6	155	30	9	19	40	1.83
50059086--50059320	54	4.4	54	86	2	278	30	9	20	40	1.84
50059142--50059320	81	2.2	80	92	1	304	30	8	20	40	1.82
50059142--50059334	27	7.2	27	90	0	271	30	8	21	39	1.83
50059085--50059320	81	3.0	80	85	2	296	30	9	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50059311--50059535	27	8.3	27	90	0	315	40	8	21	28	1.83
50059285--50059535	54	4.6	54	82	3	220	39	8	21	29	1.84
50059515--50059554	19	2.1	19	85	0	53	35	10	27	27	1.89
50059549--50059720	27	6.4	26	72	9	123	30	10	18	40	1.84
50059549--50059722	80	2.2	81	88	1	251	31	10	18	39	1.85
50059576--50059720	54	2.7	53	77	7	150	31	10	17	40	1.83
50062111--50062179	24	2.8	25	84	4	95	24	23	24	27	2.00
50062381--50062653	81	3.4	81	87	0	377	26	20	19	34	1.96
50062381--50062649	27	10.0	27	86	0	342	25	20	18	34	1.96
50062638--50062845	27	7.8	27	81	1	222	31	9	19	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328