genome.fa.s7.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  162  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47449990--47450064	37	2.1	37	89	2	116	25	18	14	41	1.89
47455923--47455999	34	2.3	34	93	0	127	24	22	22	31	1.98
47456184--47456213	15	1.9	16	93	6	53	33	10	6	50	1.62
47457646--47457698	25	2.2	24	86	3	70	20	22	18	37	1.94
47466403--47466514	56	2.1	53	81	11	129	37	17	16	27	1.92
47467705--47467871	40	4.2	40	78	6	160	25	22	27	24	2.00
47469880--47470039	29	5.5	29	82	4	180	25	31	16	26	1.97
47471325--47471374	26	2.0	24	84	7	64	8	16	0	76	1.02
47481543--47481573	16	1.9	16	93	0	53	35	22	0	41	1.54
47481540--47481579	20	2.0	20	85	0	53	37	22	0	40	1.54
47488904--47488934	16	1.9	16	93	0	53	35	22	0	41	1.54
47488901--47488940	20	2.0	20	85	0	53	37	22	0	40	1.54
47489129--47489383	55	4.8	53	79	9	236	21	24	17	36	1.95
47491983--47492091	41	2.6	42	88	4	150	33	24	19	22	1.97
47492193--47492248	14	3.9	14	73	17	53	53	16	0	30	1.43
47510468--47510518	25	2.0	25	88	0	75	31	21	19	27	1.97
47511230--47511271	18	2.3	18	95	4	75	40	11	4	42	1.63
47513817--47513859	21	2.1	21	91	4	70	58	6	4	30	1.45
47517506--47517543	2	19.0	2	100	0	76	50	0	0	50	1.00
47518487--47518542	20	2.8	20	100	0	112	42	10	5	41	1.62
47535999--47536029	14	2.2	14	94	0	53	9	25	32	32	1.88
47542871--47542948	41	1.9	41	84	5	104	15	20	32	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47543133--47543228	35	2.7	35	90	1	138	30	12	17	39	1.87
47546339--47546506	40	4.2	40	80	3	187	25	21	27	26	1.99
47548208--47548379	93	1.8	93	92	2	292	29	29	20	21	1.98
47548201--47548376	46	3.8	47	79	12	202	30	28	19	21	1.98
47548252--47548395	46	3.1	44	76	15	141	29	28	20	22	1.98
47555753--47555924	93	1.8	93	96	0	317	27	29	21	20	1.98
47555746--47555921	46	3.8	46	79	12	216	28	29	21	20	1.98
47561383--47561415	16	2.1	16	100	0	66	36	0	21	42	1.53
47564736--47564813	41	1.9	41	84	5	104	15	20	32	32	1.94
47564998--47565080	35	2.3	35	89	2	121	31	13	16	38	1.87
47568196--47568363	40	4.2	40	80	3	187	25	22	26	25	2.00
47576893--47577077	40	4.6	40	80	7	214	25	24	27	23	2.00
47576893--47577077	80	2.3	81	87	4	259	25	24	27	23	2.00
47578846--47578923	41	1.9	41	84	5	104	16	20	29	33	1.95
47579108--47579195	35	2.5	35	88	1	122	31	11	15	40	1.83
47580775--47580933	27	5.9	27	79	7	153	37	17	10	33	1.85
47580776--47580906	54	2.4	54	87	0	181	36	18	9	35	1.84
47580770--47580919	54	2.8	53	79	4	174	35	18	12	34	1.88
47580770--47580934	81	2.0	81	80	6	183	36	20	10	32	1.87
47582291--47582315	13	1.9	13	100	0	50	44	8	8	40	1.63
47584222--47584405	27	7.0	26	78	4	172	39	19	9	31	1.84
47584223--47584377	52	2.9	53	85	2	195	39	20	8	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47584217--47584405	53	3.6	53	82	3	211	38	20	10	31	1.86
47584331--47584418	27	3.3	27	76	7	90	43	18	11	27	1.84
47589232--47589464	48	4.9	48	96	0	430	34	6	28	30	1.81
47591290--47591497	40	5.2	40	84	2	258	25	21	26	26	2.00
47598844--47598913	27	2.5	28	88	2	106	28	14	25	31	1.95
47598844--47598925	27	3.0	27	80	8	103	29	13	23	34	1.93
47599694--47599727	17	2.1	16	88	5	50	52	0	17	29	1.45
47606759--47606859	28	3.5	30	83	6	127	30	13	26	28	1.94
47606759--47606859	29	3.5	29	81	9	116	30	13	26	28	1.94
47614609--47614768	29	5.5	30	88	8	222	33	13	25	27	1.94
47614609--47614768	59	2.8	57	89	4	223	33	13	25	27	1.94
47622362--47622505	24	6.0	24	91	2	227	28	21	20	29	1.98
47622555--47622621	20	3.3	20	93	0	116	32	20	11	34	1.90
47622555--47622610	11	5.5	11	71	16	57	32	19	12	35	1.89
47622658--47622705	25	1.9	25	86	0	69	27	14	22	35	1.93
47626288--47626769	48	10.0	48	94	0	829	35	5	28	30	1.80
47626914--47627018	37	2.8	37	92	0	174	23	17	31	27	1.97
47628289--47628607	40	8.0	40	93	0	523	20	21	30	26	1.98
47631366--47631405	20	2.0	20	100	0	80	25	20	25	30	1.99
47632228--47632709	48	10.0	48	95	0	856	34	6	28	30	1.81
47632850--47632957	37	2.9	37	88	0	153	25	18	28	27	1.98
47636202--47636315	43	2.7	42	73	2	111	21	16	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47640193--47640334	40	3.5	40	83	1	124	27	23	26	22	1.99
47640232--47640360	40	3.2	39	84	6	152	24	22	27	25	2.00
47646800--47646941	40	3.5	40	83	1	124	27	23	26	22	1.99
47646839--47646967	40	3.2	39	84	6	152	24	22	27	25	2.00
47652385--47652409	12	2.1	12	100	0	50	28	0	16	56	1.41
47652484--47652567	44	1.9	44	83	9	109	38	11	25	25	1.90
47652573--47652846	45	5.9	45	75	9	255	33	18	25	21	1.97
47652572--47652888	92	3.4	90	75	8	314	33	19	25	22	1.97
47653851--47654218	49	7.7	49	92	3	581	29	30	7	32	1.86
47653851--47654218	96	3.8	96	93	1	596	29	30	7	32	1.86
47656938--47657042	54	1.9	55	86	1	149	37	15	20	26	1.93
47685383--47685477	40	2.4	40	80	7	104	25	20	26	28	1.99
47686380--47686630	27	9.3	27	85	6	312	28	23	8	39	1.84
47686623--47686775	27	5.7	27	82	1	209	40	20	7	31	1.81
47686380--47686629	54	4.6	54	91	0	401	28	23	8	39	1.84
47686380--47686630	81	3.1	81	85	4	371	28	23	8	39	1.84
47686623--47686775	80	1.9	80	87	0	225	40	20	7	31	1.81
47686623--47686772	53	2.8	54	92	2	248	41	20	7	30	1.80
47688425--47688516	40	2.3	40	90	0	148	26	26	27	20	1.99
47688779--47688822	22	2.0	22	82	8	54	31	11	13	43	1.80
47691995--47692288	38	7.0	38	72	18	201	29	24	15	30	1.95
47692010--47692208	85	2.3	85	95	0	353	29	24	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47692040--47692251	47	4.7	47	79	10	253	30	23	15	31	1.95
47692120--47692258	48	2.9	48	86	1	199	30	21	16	31	1.95
47692040--47692288	133	1.9	132	88	0	372	29	23	15	30	1.95
47693841--47693916	38	2.0	38	97	0	143	25	25	5	44	1.74
47701834--47701874	20	2.0	20	100	0	82	39	9	9	41	1.71
47709412--47709654	40	6.1	40	91	4	352	25	27	23	23	2.00
47709412--47709654	79	3.1	79	89	5	350	25	27	23	23	2.00
47714360--47714397	16	2.4	16	95	0	67	23	31	5	39	1.77
47715791--47715984	40	4.9	40	94	0	336	22	28	23	26	1.99
47715764--47715984	80	2.8	80	89	2	340	21	27	23	27	1.99
47724938--47725007	27	2.6	27	93	2	113	30	28	14	27	1.95
47726904--47727097	40	4.9	40	93	0	327	22	28	22	26	1.99
47731859--47732081	40	5.6	40	90	2	306	27	27	21	22	1.99
47732175--47732469	40	7.1	40	84	10	353	27	28	21	22	1.99
47732269--47732368	50	2.0	50	100	0	200	30	28	20	22	1.98
47732228--47732408	90	2.0	90	94	2	319	28	27	20	23	1.99
47732189--47732427	130	1.8	130	91	1	399	26	28	22	23	1.99
47739399--47739461	24	2.6	24	100	0	126	20	17	26	34	1.95
47741032--47741210	49	3.6	49	86	2	243	30	28	15	25	1.96
47745978--47746290	46	6.8	46	90	1	430	21	24	15	38	1.92
47760703--47760840	43	3.2	42	76	9	127	30	24	19	25	1.98
47779792--47779924	43	3.1	41	71	16	99	24	17	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47779750--47779945	86	2.3	86	80	7	218	26	16	22	34	1.95
47782610--47782649	21	1.9	21	89	0	62	17	30	25	27	1.97
47782731--47782770	21	1.9	21	85	10	55	32	30	10	27	1.89
47782730--47782777	21	2.3	21	78	7	53	31	35	10	22	1.88
47788906--47789296	50	7.7	50	75	4	320	30	25	17	26	1.97
47788967--47789249	101	2.8	101	85	1	370	30	25	18	26	1.98
47800627--47800664	16	2.4	16	86	0	58	44	21	23	10	1.83
47800873--47800934	28	2.2	29	88	2	90	27	12	30	29	1.93
47802585--47802671	43	2.0	43	90	0	138	19	20	16	43	1.88
47802916--47802995	28	2.8	28	81	10	92	31	33	13	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328