genome.fa.s7.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  170  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50062694--50062845	81	1.9	81	92	0	259	31	9	19	39	1.83
50062838--50063147	27	11.6	27	83	2	331	40	8	20	31	1.81
50062720--50063126	81	5.1	81	81	3	275	37	8	20	33	1.82
50062838--50063147	159	1.9	162	86	3	448	40	8	20	31	1.81
50063152--50063307	80	1.9	82	85	5	219	33	10	17	37	1.85
50063164--50063301	27	5.1	27	73	10	113	31	10	18	38	1.86
50063173--50063301	54	2.4	53	78	8	136	31	10	19	37	1.86
50065677--50065728	25	2.1	25	89	3	79	28	19	19	32	1.96
50065684--50065753	25	2.8	25	84	0	86	28	22	22	25	1.99
50065957--50066227	27	10.1	27	88	1	366	25	19	18	36	1.95
50066252--50066418	80	2.1	80	87	3	201	31	8	19	40	1.82
50066268--50066433	27	6.2	27	83	4	192	31	7	21	39	1.82
50066412--50066722	27	11.5	27	86	0	406	41	8	20	30	1.81
50066412--50066722	81	3.8	81	89	1	462	41	8	20	30	1.81
50066737--50066878	27	5.3	26	78	6	151	30	11	19	39	1.86
50066735--50066879	54	2.7	53	80	10	170	31	11	19	38	1.86
50068509--50068672	71	2.3	71	100	0	328	18	28	17	35	1.94
50068509--50068706	71	2.8	70	91	3	258	20	28	17	33	1.95
50076085--50076248	71	2.3	71	100	0	328	18	28	17	35	1.94
50076085--50076282	71	2.8	70	91	3	258	20	28	17	33	1.95
50082986--50083189	53	3.8	54	79	5	218	20	23	18	37	1.94
50097183--50097268	3	28.7	3	100	0	172	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50100169--50100197	13	2.2	13	100	0	58	31	0	13	55	1.39
50107501--50107839	123	2.8	123	96	0	606	30	10	25	33	1.90
50107808--50108011	40	5.1	40	86	1	230	25	21	26	26	1.99
50118241--50118578	123	2.8	123	93	0	579	30	10	24	33	1.90
50118547--50118748	40	5.1	40	86	1	226	25	21	25	27	2.00
50126975--50127017	17	2.6	17	81	3	52	32	4	20	41	1.73
50127253--50127351	43	2.3	43	91	0	162	30	21	25	23	1.99
50146266--50146336	28	2.5	28	86	0	97	35	11	25	28	1.90
50153155--50153224	28	2.5	28	85	0	95	35	11	25	27	1.90
50153397--50153491	41	2.3	43	82	10	108	28	18	29	23	1.98
50166134--50166182	9	5.7	9	76	23	52	44	0	32	22	1.53
50168579--50168677	28	3.5	29	94	5	168	28	12	27	32	1.92
50172909--50173173	40	6.6	40	78	1	262	25	24	22	27	2.00
50172941--50173135	80	2.4	80	94	1	338	25	23	23	28	1.99
50179588--50179631	21	2.1	21	100	0	88	38	31	11	18	1.86
50179825--50179923	28	3.5	29	94	5	168	28	12	27	32	1.92
50189003--50189055	24	2.2	24	96	0	97	32	3	43	20	1.70
50190468--50190578	27	4.2	26	78	10	116	18	23	21	36	1.94
50190468--50190578	54	2.1	53	84	5	143	18	23	21	36	1.94
50196824--50196872	24	2.0	24	96	0	89	32	4	40	22	1.73
50198283--50198393	27	4.2	26	89	5	159	16	24	22	36	1.94
50198283--50198393	54	2.1	53	91	1	177	16	24	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50203550--50203574	13	1.9	13	100	0	50	48	20	0	32	1.50
50210646--50210742	48	2.0	48	97	0	185	19	19	17	43	1.88
50216280--50216440	84	1.9	85	82	7	202	29	18	21	31	1.97
50216333--50216447	41	2.8	42	75	10	128	26	20	21	30	1.98
50222223--50222283	30	2.0	30	83	0	77	31	22	8	37	1.84
50223106--50223134	5	5.8	5	100	0	58	20	0	0	79	0.74
50225076--50225185	40	2.8	40	85	0	148	23	26	23	26	2.00
50229218--50229264	23	2.0	23	100	0	94	17	8	23	51	1.72
50239709--50239778	27	2.5	28	93	2	115	30	14	25	30	1.95
50239733--50239790	27	2.1	27	84	6	73	31	15	22	31	1.95
50250583--50250712	46	2.8	48	79	11	162	30	29	20	20	1.98
50250588--50250731	46	3.1	45	73	11	139	29	29	20	20	1.98
50253983--50254016	12	2.9	11	87	12	50	47	41	0	11	1.40
50254191--50254220	2	15.0	2	92	0	51	46	0	3	50	1.18
50258544--50258582	21	1.9	20	84	5	51	35	12	2	48	1.55
50260539--50260591	20	2.8	18	78	10	61	69	1	5	22	1.19
50260539--50260591	9	5.7	9	73	8	52	69	1	5	22	1.19
50260798--50260829	17	1.9	16	93	6	55	53	3	0	43	1.16
50267900--50267929	6	5.2	6	92	8	53	0	16	0	83	0.65
50267900--50267929	11	2.6	12	94	5	53	0	16	0	83	0.65
50274974--50275191	46	4.6	46	77	13	203	23	26	18	30	1.98
50274923--50275191	94	2.8	94	80	9	296	23	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50278735--50278848	57	2.0	57	100	0	228	64	5	8	21	1.41
50278860--50278901	17	2.6	17	81	7	52	78	0	0	21	0.75
50284989--50285059	19	3.7	19	75	0	61	35	26	19	18	1.95
50286420--50286455	16	2.2	17	95	5	65	16	5	2	75	1.12
50287928--50287972	2	22.5	2	100	0	90	51	0	48	0	1.00
50297504--50297678	46	3.8	45	79	11	203	21	20	29	28	1.98
50300582--50300637	15	3.7	15	88	7	87	12	16	10	60	1.58
50303028--50303201	46	3.8	46	75	11	158	22	20	26	30	1.98
50303025--50303195	93	1.8	93	86	5	247	22	21	27	29	1.99
50306210--50306367	41	3.8	41	81	5	156	31	14	18	35	1.91
50306306--50306411	41	2.6	41	83	1	115	31	17	18	32	1.95
50311755--50311840	43	2.0	43	95	0	154	38	4	13	43	1.66
50312174--50312252	28	2.8	28	90	0	131	32	8	26	31	1.87
50316646--50316675	15	2.0	15	100	0	60	20	13	26	40	1.89
50320566--50320752	40	4.6	40	88	2	223	25	15	24	34	1.95
50323272--50323514	41	5.9	41	88	0	344	31	23	23	21	1.98
50323931--50323979	24	2.0	24	100	0	98	53	0	4	42	1.20
50324562--50324600	19	2.1	19	90	4	62	46	2	2	48	1.29
50328934--50329042	43	2.5	43	89	5	168	22	17	27	32	1.97
50331105--50331141	2	18.5	2	100	0	74	51	0	0	48	1.00
50333668--50333793	46	2.7	46	87	4	173	25	20	30	23	1.98
50333672--50333939	46	5.6	49	75	15	160	25	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50337772--50337806	18	1.9	18	100	0	70	45	11	20	22	1.82
50341108--50341143	17	2.1	17	89	0	54	72	0	2	25	0.98
50348652--50348689	20	1.9	20	88	0	58	34	34	13	18	1.89
50348788--50348836	25	2.0	25	83	0	62	44	14	4	36	1.64
50355719--50355813	25	3.8	25	90	5	147	26	22	25	26	2.00
50356061--50356255	54	3.6	54	83	4	207	29	8	22	40	1.83
50356075--50356366	27	10.8	27	81	4	187	32	8	21	37	1.85
50366403--50366610	40	5.2	40	83	2	249	24	21	27	26	1.99
50371689--50371742	28	1.9	28	88	0	81	20	22	33	24	1.97
50376584--50376715	29	4.6	29	80	3	90	25	32	16	25	1.96
50379988--50380279	23	12.5	23	78	9	270	31	24	19	23	1.98
50380003--50380290	46	6.2	46	84	7	346	31	24	21	23	1.98
50380195--50380251	28	2.0	28	96	0	105	36	22	21	19	1.95
50381215--50381243	14	2.1	14	100	0	58	44	6	41	6	1.58
50382883--50382940	6	9.2	6	76	16	55	75	3	5	15	1.11
50382883--50382934	18	2.8	18	82	11	61	75	3	5	15	1.14
50384566--50384590	4	6.2	4	100	0	50	76	0	0	24	0.80
50384589--50384621	16	2.0	17	88	5	50	57	6	6	30	1.47
50385153--50385203	20	2.5	20	87	0	66	23	39	23	13	1.91
50389754--50389932	50	3.7	50	78	12	162	26	17	27	28	1.98
50389754--50389932	99	1.9	94	83	8	234	26	17	27	28	1.98
50389808--50389942	49	2.7	50	82	8	168	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50397189--50397345	27	5.8	26	77	5	136	35	14	25	25	1.93
50402217--50402403	71	2.7	68	93	5	281	18	28	18	34	1.95
50402240--50402403	71	2.3	71	100	0	328	18	28	17	35	1.94
50402240--50402437	71	2.8	70	91	3	258	20	28	17	33	1.95
50406595--50406770	46	3.8	46	81	10	232	20	21	29	28	1.98
50406591--50406762	93	1.8	93	96	0	317	20	22	30	27	1.98
50409717--50409785	15	4.6	15	83	0	84	11	17	13	57	1.64
50409708--50409795	30	3.0	30	81	8	99	10	17	15	56	1.66
50412181--50412356	46	3.8	46	81	10	232	20	21	29	28	1.98
50412177--50412348	93	1.8	93	96	0	317	20	22	30	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328