genome.fa.s7.2.7.7.80.10.50.1000.243.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  243  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72355981--72356045	25	2.6	25	87	4	96	26	23	24	26	2.00
72355981--72356065	25	3.4	25	85	4	84	28	20	23	28	1.99
72357613--72357799	71	2.7	68	93	5	281	18	28	18	34	1.95
72357636--72357799	71	2.3	71	100	0	328	18	28	17	35	1.94
72357636--72357833	71	2.8	70	92	3	276	20	28	17	33	1.95
72365200--72365363	71	2.3	71	100	0	328	18	28	17	35	1.94
72365200--72365397	71	2.8	70	92	3	276	20	28	17	33	1.95
72372746--72372932	71	2.7	68	93	5	281	18	28	18	34	1.95
72372769--72372932	71	2.3	71	100	0	328	18	28	17	35	1.94
72372769--72372966	71	2.8	70	92	3	276	20	28	17	33	1.95
72374313--72374483	93	1.8	93	94	0	306	28	29	20	21	1.98
72374305--72374480	46	3.8	46	80	10	214	29	28	19	21	1.98
72383792--72383978	71	2.7	68	93	5	281	18	28	18	34	1.95
72383815--72383978	71	2.3	71	100	0	328	18	28	17	35	1.94
72383815--72384012	71	2.8	70	92	3	276	20	28	17	33	1.95
72385141--72385217	38	2.0	38	100	0	154	41	27	5	25	1.76
72391383--72391568	71	2.7	68	92	6	272	18	27	18	34	1.95
72391406--72391568	71	2.3	71	98	1	319	19	27	17	35	1.94
72391406--72391602	71	2.8	70	91	4	267	20	27	17	34	1.95
72392859--72392966	31	3.5	31	94	1	191	26	17	25	30	1.97
72395577--72395688	43	2.6	43	85	2	145	30	15	24	30	1.95
72409181--72409375	40	4.9	40	78	8	184	23	27	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72409181--72409374	80	2.4	79	82	4	228	23	27	23	25	2.00
72412512--72412550	20	2.0	20	100	0	78	25	10	43	20	1.83
72419915--72420079	39	4.2	40	82	3	183	24	26	21	26	2.00
72419930--72420079	79	1.9	78	83	6	196	24	27	22	26	1.99
72420899--72420944	17	2.5	19	74	22	53	34	23	17	23	1.96
72427907--72428072	40	4.2	40	82	3	185	24	27	21	26	1.99
72427923--72428034	39	2.8	38	87	4	143	25	28	22	24	1.99
72427923--72428072	79	1.9	78	83	6	196	24	27	22	26	1.99
72428892--72428937	17	2.5	19	74	22	53	34	23	17	23	1.96
72430334--72430630	43	6.9	43	94	0	515	32	31	22	13	1.92
72430625--72430827	40	5.1	40	83	4	149	25	28	22	24	1.99
72430623--72430823	80	2.5	80	81	2	215	25	27	22	24	2.00
72432745--72433061	47	6.7	47	89	4	465	29	31	7	31	1.85
72432745--72433061	96	3.3	94	89	5	483	29	31	7	31	1.85
72436529--72436559	16	1.9	16	100	0	62	25	19	19	35	1.95
72438981--72439033	26	2.0	26	85	7	72	37	18	18	24	1.94
72439035--72439099	27	2.4	27	84	0	76	26	23	16	33	1.96
72439052--72439125	27	2.7	27	89	0	112	24	16	20	39	1.92
72441004--72441071	28	2.5	28	92	2	111	20	10	25	44	1.83
72442698--72442735	20	1.9	20	88	0	58	52	10	2	34	1.50
72444943--72445011	28	2.5	28	95	2	122	18	10	27	43	1.82
72446640--72446677	20	1.9	20	88	0	58	52	10	2	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72460657--72460864	40	5.2	40	80	3	177	26	22	25	25	2.00
72460711--72460864	80	1.9	80	86	5	222	24	24	27	24	2.00
72470968--72471097	40	3.3	39	78	8	129	27	26	22	23	2.00
72470984--72471134	40	3.8	40	77	9	121	24	26	22	26	2.00
72486863--72486947	24	3.5	24	74	3	80	29	24	17	28	1.97
72494346--72494432	24	3.6	24	71	20	72	24	32	17	26	1.97
72497039--72497181	40	3.4	41	74	9	121	31	25	16	27	1.96
72503048--72503239	40	4.8	39	82	5	172	24	22	28	24	2.00
72503048--72503239	79	2.4	81	84	6	241	24	22	28	24	2.00
72503048--72503265	79	2.7	78	79	7	217	25	22	27	24	2.00
72505236--72505273	18	2.1	18	95	0	67	42	28	5	23	1.76
72505947--72506115	48	3.6	47	80	6	198	24	27	19	28	1.99
72518718--72518901	40	4.6	39	75	6	138	26	23	27	22	2.00
72518758--72518946	80	2.4	81	77	4	186	23	24	29	22	1.99
72526820--72527003	40	4.6	39	75	6	138	26	23	27	22	2.00
72526860--72527048	80	2.4	81	77	4	186	23	24	29	22	1.99
72532739--72532812	22	3.2	22	66	17	60	29	10	32	27	1.90
72532715--72532887	47	3.7	47	92	0	274	32	7	31	28	1.85
72532729--72532801	25	3.0	25	64	18	64	31	9	30	28	1.89
72537379--72537448	27	2.5	28	88	2	106	28	14	25	31	1.95
72537379--72537460	27	3.0	27	80	8	103	29	13	23	34	1.93
72545456--72545525	27	2.5	28	88	2	106	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72545456--72545537	27	3.0	27	80	8	103	29	13	23	34	1.93
72548297--72548504	40	5.2	40	84	0	218	25	22	25	25	2.00
72548298--72548504	80	2.6	80	83	4	247	25	22	26	25	2.00
72556343--72556550	40	5.2	40	84	0	218	25	22	25	25	2.00
72556344--72556550	80	2.6	80	83	4	247	25	22	26	25	2.00
72564417--72564642	24	9.2	24	89	3	317	31	20	19	28	1.97
72564417--72564642	74	3.1	72	87	3	326	31	20	19	28	1.97
72564418--72564642	98	2.3	98	95	0	396	31	20	19	28	1.97
72569926--72569960	13	2.7	13	90	0	61	11	37	22	28	1.89
72571764--72571842	6	12.8	6	77	15	81	48	15	18	17	1.82
72571755--72571842	19	4.8	18	74	18	65	48	15	17	18	1.81
72571764--72571842	31	2.5	31	93	0	131	48	15	18	17	1.82
72571769--72571815	25	1.9	24	95	4	85	44	17	21	17	1.86
72572225--72572420	27	7.3	27	93	1	313	28	21	16	33	1.95
72572405--72572530	27	4.7	27	77	3	101	28	7	22	42	1.80
72572433--72572571	27	5.1	27	78	3	109	29	5	24	40	1.78
72572440--72572609	54	3.1	54	83	1	180	32	6	23	37	1.80
72572467--72572636	27	6.3	27	86	0	169	34	5	22	37	1.77
72572523--72572639	27	4.3	27	91	0	171	37	5	23	33	1.79
72572621--72572656	18	2.0	18	100	0	72	33	5	27	33	1.80
72572661--72572755	27	3.5	27	78	5	102	31	8	18	41	1.81
72574705--72574786	6	13.3	6	70	19	53	47	14	18	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72574689--72574786	31	3.2	31	81	4	101	48	14	17	19	1.80
72575168--72575302	54	2.5	54	90	0	207	26	20	17	34	1.95
72575168--72575309	27	5.3	27	84	0	176	27	19	17	35	1.95
72575169--72575336	81	2.1	81	83	4	205	27	18	17	35	1.94
72575168--72575336	54	3.1	54	84	5	164	27	18	18	35	1.94
72575291--72575433	54	2.6	54	79	4	137	28	7	23	39	1.82
72575267--72575392	27	4.7	26	82	5	117	25	9	23	42	1.84
72575321--72575513	27	7.1	27	79	3	138	31	6	24	37	1.82
72575412--72575527	27	4.3	27	86	0	169	35	7	24	32	1.84
72575532--72575617	27	3.2	27	81	4	102	29	8	22	40	1.82
72584254--72584425	40	4.3	40	83	5	206	24	21	26	27	1.99
72584254--72584425	80	2.2	79	86	5	231	24	21	26	27	1.99
72584653--72584694	22	1.9	22	85	9	59	33	9	14	42	1.78
72587830--72588001	93	1.8	93	93	0	299	27	29	22	21	1.99
72587823--72587998	46	3.8	46	79	10	205	28	28	21	21	1.98
72590373--72590422	15	3.4	15	86	2	66	60	12	18	10	1.59
72590384--72590431	15	3.2	15	79	5	53	56	14	16	12	1.68
72593358--72593528	93	1.8	92	91	1	279	28	28	21	22	1.99
72593401--72593544	46	3.1	45	71	18	118	29	27	19	23	1.98
72601086--72601391	9	34.6	9	80	7	290	35	0	18	46	1.52
72601355--72601413	27	2.2	27	81	6	66	32	0	27	40	1.56
72601275--72601430	72	2.2	70	80	9	163	35	0	21	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72601293--72601430	63	2.2	63	82	0	168	34	0	21	43	1.53
72601910--72601968	5	11.6	5	96	3	109	81	0	0	18	0.69
72604549--72604596	25	1.9	25	86	0	69	33	25	16	25	1.96
72604640--72604698	20	3.0	20	97	0	109	37	10	20	32	1.86
72604644--72604698	11	5.4	11	70	16	55	38	10	20	30	1.87
72604749--72604842	23	4.0	24	87	8	131	28	21	23	26	1.99
72604750--72604842	47	2.0	48	87	10	138	27	21	23	26	1.99
72612609--72612656	25	1.9	25	86	0	69	33	25	16	25	1.96
72612700--72612758	20	3.0	20	97	0	109	37	10	20	32	1.86
72612704--72612758	11	5.4	11	70	16	55	38	10	20	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328