genome.fa.s7.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  160  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46777054--46777224	93	1.8	93	91	0	279	22	22	27	27	1.99
46777058--46777229	46	3.7	46	76	13	181	23	22	26	27	1.99
46781008--46781073	19	3.2	21	87	6	64	36	19	9	34	1.84
46781025--46781086	19	3.2	19	95	4	106	35	17	9	37	1.83
46788952--46788995	6	7.3	6	92	0	52	22	2	9	65	1.32
46789612--46789817	99	2.1	99	94	0	358	31	9	12	46	1.74
46790773--46790818	2	23.0	2	100	0	92	50	0	0	50	1.00
46792326--46792439	31	3.5	31	89	8	147	23	21	14	40	1.90
46792303--46792465	38	4.4	38	84	11	232	22	22	17	38	1.93
46792326--46792465	69	2.0	69	98	0	271	23	21	15	39	1.92
46792657--46792751	24	4.0	24	85	10	124	26	24	21	28	1.99
46792657--46792750	47	2.0	49	85	12	133	26	24	21	27	1.99
46792802--46792861	20	3.0	20	90	0	102	31	20	11	36	1.88
46792904--46792951	25	1.9	25	86	0	69	25	16	25	33	1.96
46800682--46800795	31	3.5	31	89	8	147	23	21	14	40	1.90
46800659--46800821	38	4.4	38	84	11	232	22	22	17	38	1.93
46800682--46800821	69	2.0	69	98	0	271	23	21	15	39	1.92
46801013--46801107	24	4.0	24	85	10	124	26	24	21	28	1.99
46801013--46801106	47	2.0	49	85	12	133	26	24	21	27	1.99
46801158--46801217	20	3.0	20	90	0	102	31	20	11	36	1.88
46801260--46801307	25	1.9	25	86	0	69	25	16	25	33	1.96
46804018--46804077	30	2.0	30	96	0	111	20	35	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46812532--46812589	29	2.0	29	83	10	73	31	17	6	44	1.75
46813793--46813844	21	2.5	21	80	0	59	57	13	15	13	1.65
46814650--46814697	23	2.0	24	84	11	64	41	2	0	56	1.11
46816129--46816185	28	2.0	28	100	0	114	50	3	14	31	1.59
46817098--46817133	18	2.0	18	89	10	56	72	5	8	13	1.27
46831859--46832018	29	5.5	29	82	4	180	26	16	31	25	1.97
46838272--46838496	49	4.5	49	83	2	261	26	16	27	30	1.96
46846528--46846589	18	3.5	18	88	2	90	12	25	41	19	1.87
46852349--46852415	21	3.2	21	85	2	82	20	26	34	17	1.96
46853964--46853993	2	15.0	2	100	0	60	50	0	0	50	1.00
46856922--46856961	6	6.5	6	88	5	62	87	0	12	0	0.54
46864868--46864924	15	3.9	15	88	2	89	35	0	12	52	1.39
46865308--46865384	23	3.4	23	87	5	104	14	20	24	40	1.90
46868280--46868397	35	3.4	35	78	0	137	44	16	9	29	1.78
46875825--46875873	22	2.2	22	85	0	62	36	18	10	34	1.85
46875829--46875905	27	2.9	27	71	7	66	31	19	10	38	1.85
46875832--46875874	22	2.0	22	90	0	68	34	18	13	32	1.90
46875865--46875940	15	4.8	15	69	12	53	28	17	7	46	1.76
46875921--46875976	22	2.5	22	79	0	67	30	25	5	39	1.78
46877053--46877085	17	2.0	17	88	5	50	75	0	21	3	0.93
46879112--46879156	19	2.3	20	88	3	65	28	6	17	46	1.73
46884853--46885233	191	2.0	191	90	0	591	29	23	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46889356--46889406	24	2.1	25	81	3	59	29	11	17	41	1.85
46890265--46890308	21	2.1	21	82	0	52	34	20	2	43	1.64
46895250--46895508	46	5.5	46	72	11	165	29	18	30	22	1.97
46896733--46896787	21	2.7	21	91	2	94	7	34	32	25	1.83
46897086--46897154	30	2.3	30	92	0	111	18	33	26	21	1.97
46898287--46898373	45	1.9	45	97	0	165	35	24	13	26	1.93
46898306--46898377	21	3.3	21	66	17	56	36	23	15	25	1.94
46911407--46911908	125	4.0	125	84	2	650	27	17	16	38	1.91
46911967--46912048	28	2.9	27	84	10	110	40	19	2	37	1.65
46911967--46912149	58	3.1	57	78	14	190	40	19	1	38	1.62
46911967--46912138	34	5.5	32	75	17	150	39	19	1	39	1.62
46911996--46912114	64	1.9	63	92	1	202	39	18	2	39	1.64
46911967--46912149	29	6.1	29	73	15	151	40	19	1	38	1.62
46911990--46912140	63	2.4	64	83	2	207	39	19	1	39	1.63
46912104--46912172	22	3.0	23	83	10	95	39	13	0	47	1.42
46912061--46912216	82	1.9	80	85	2	213	41	19	0	39	1.51
46911997--46912271	145	1.9	141	79	10	306	42	16	1	39	1.56
46913127--46913170	22	2.0	22	95	0	79	31	15	18	34	1.92
46915022--46915158	48	2.9	48	87	4	195	26	23	24	25	2.00
46914930--46915158	91	2.5	93	82	7	252	27	20	24	28	1.99
46917387--46917544	41	3.9	40	80	8	167	25	27	22	23	2.00
46929727--46929895	40	4.2	40	80	4	173	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46933053--46933192	48	2.9	48	91	0	208	25	23	25	26	2.00
46935223--46935404	39	4.6	39	90	0	247	21	31	23	23	1.98
46935253--46935404	39	3.9	39	93	0	250	22	31	22	23	1.98
46939809--46939994	40	4.7	40	88	5	236	25	26	22	25	2.00
46946911--46947118	40	5.2	39	83	6	231	25	21	27	25	1.99
46946911--46947118	80	2.6	80	82	3	258	25	21	27	25	1.99
46951174--46951357	40	4.6	40	87	5	232	25	27	21	25	2.00
46960086--46960242	43	3.7	43	79	10	162	28	17	21	32	1.96
46960379--46960422	21	2.1	21	100	0	88	47	9	13	29	1.74
46972618--46972671	19	2.7	21	77	11	60	33	3	11	51	1.55
46972618--46972686	21	3.5	20	69	15	54	34	5	11	47	1.64
46979841--46980206	27	13.7	27	75	9	277	40	19	9	30	1.83
46979841--46980206	54	6.8	53	78	6	337	40	19	9	30	1.83
46980161--46980220	27	2.2	27	84	0	75	43	16	11	28	1.83
46980624--46980701	27	2.9	27	80	3	68	24	17	16	41	1.90
46980998--46981065	27	2.6	27	76	2	66	23	19	27	29	1.98
46981764--46981818	20	2.7	21	88	5	78	45	12	9	32	1.74
46983703--46983803	50	2.0	50	100	0	202	44	17	3	33	1.68
46986696--46986920	40	5.7	40	88	5	273	25	26	21	25	2.00
46986696--46986920	79	2.8	78	85	7	267	25	26	21	25	2.00
46994845--46995049	80	2.6	80	84	6	281	26	25	20	27	1.99
46994824--46995049	40	5.7	40	86	4	255	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47000487--47000568	41	2.0	41	97	0	155	46	19	13	20	1.83
47003201--47003327	23	5.5	22	76	14	114	27	22	19	30	1.98
47003194--47003330	46	2.9	46	79	12	129	27	22	20	29	1.98
47006980--47007109	29	4.5	30	85	6	169	33	13	24	28	1.94
47018554--47018683	29	4.5	29	86	6	165	31	13	26	28	1.94
47027288--47027334	22	2.1	23	84	11	62	34	23	14	27	1.94
47037665--47037775	22	5.0	22	85	6	118	30	18	25	26	1.98
47037665--47037753	45	2.0	45	86	4	126	29	19	25	25	1.98
47042962--47042996	2	17.5	2	100	0	70	48	0	0	51	1.00
47047632--47047740	45	2.3	46	87	7	150	33	10	29	27	1.89
47047811--47047895	40	2.2	40	84	2	109	17	22	31	28	1.97
47048543--47048567	2	12.5	2	100	0	50	48	0	0	52	1.00
47051927--47052112	40	4.7	40	86	5	227	25	26	22	25	2.00
47059955--47060140	40	4.7	40	87	5	218	25	26	22	25	2.00
47063399--47063501	40	2.5	41	73	10	104	33	9	11	45	1.73
47063414--47063494	20	4.1	20	76	4	67	32	8	13	45	1.74
47068056--47068175	48	2.6	46	82	5	134	27	22	15	34	1.95
47068990--47069098	37	2.9	37	94	0	182	26	30	19	23	1.98
47069304--47069447	47	3.1	47	85	2	166	28	29	9	31	1.89
47076714--47076752	13	3.0	13	84	0	51	69	2	0	28	1.02
47076911--47076953	17	2.4	18	80	7	52	62	0	9	27	1.25
47076923--47076961	17	2.2	18	90	4	62	58	0	15	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47080591--47080773	39	4.6	39	87	0	240	24	22	30	22	1.99
47088022--47088203	39	4.6	39	86	2	231	24	21	30	23	1.99
47090217--47090384	40	4.2	40	82	1	185	24	26	22	26	2.00
47093299--47093458	41	3.9	41	88	5	139	36	25	20	18	1.94
47093322--47093458	41	3.4	40	91	5	213	36	27	19	16	1.93
47093789--47093832	21	2.1	21	83	8	54	18	0	45	36	1.49
47094041--47094091	21	2.4	21	77	6	59	27	1	25	45	1.64
47094113--47094143	7	4.4	7	95	0	53	12	0	45	41	1.42
47094113--47094148	14	2.5	14	86	4	54	13	2	47	36	1.58
47094157--47094198	15	2.7	16	92	7	77	45	38	0	16	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328