genome.fa.s7.2.7.7.80.10.50.1000.304.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  304  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90470677--90470848	93	1.8	93	94	0	308	28	29	20	20	1.98
90474855--90474906	24	2.2	24	89	0	77	38	0	7	53	1.30
90475158--90475279	60	2.0	60	96	0	226	22	19	8	50	1.74
90480406--90480479	18	4.2	17	75	13	69	32	2	2	62	1.23
90480408--90480480	17	4.2	16	75	13	56	31	2	2	63	1.23
90481163--90481200	20	1.9	20	88	0	58	26	13	5	55	1.59
90482088--90482119	1	32.0	1	93	0	55	96	0	3	0	0.20
90497478--90497587	26	4.2	26	94	2	177	34	4	24	36	1.76
90499375--90499661	137	2.1	137	94	0	502	24	18	24	32	1.97
90501471--90501498	13	2.2	13	100	0	56	7	14	0	78	0.95
90505444--90505529	18	4.7	18	85	1	118	43	13	6	36	1.72
90505657--90505820	47	3.5	47	90	1	249	41	22	19	16	1.90
90505851--90505875	12	2.1	12	100	0	50	40	20	24	16	1.91
90506001--90506049	20	2.4	21	73	10	57	30	6	0	63	1.19
90506545--90506580	2	18.5	2	94	5	65	50	0	0	50	1.00
90506658--90506719	31	2.0	32	84	9	83	46	6	0	46	1.28
90511257--90511334	27	2.8	27	80	7	68	28	3	1	66	1.17
90521412--90521456	17	2.6	17	85	3	54	8	11	6	73	1.25
90523893--90524010	59	2.0	59	96	3	220	35	11	26	26	1.91
90529418--90529544	33	3.8	33	79	0	137	28	11	44	16	1.82
90533775--90533893	60	2.0	60	93	0	202	51	11	0	36	1.39
90534053--90534131	3	27.0	3	85	14	112	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90534588--90534638	3	17.0	3	100	0	102	66	0	0	33	0.92
90539736--90539832	18	5.4	18	86	0	131	31	22	14	30	1.94
90539736--90539830	36	2.6	36	89	0	145	31	23	14	30	1.94
90544653--90544692	21	1.9	21	84	0	53	37	0	2	60	1.11
90544679--90544718	20	2.0	21	85	14	57	45	2	2	50	1.28
90545813--90545894	25	3.3	24	77	6	83	32	19	28	19	1.96
90546014--90546084	24	2.9	24	82	2	70	35	21	26	16	1.95
90558348--90558402	27	2.0	27	100	0	110	41	14	10	32	1.81
90565824--90565857	6	5.5	6	89	6	50	82	0	17	0	0.67
90565824--90565857	13	2.7	13	90	4	52	82	0	17	0	0.67
90567192--90567721	177	3.0	178	80	7	623	30	17	23	28	1.97
90567199--90567767	178	3.2	175	78	7	560	30	16	23	28	1.97
90570432--90570564	41	3.3	40	83	1	158	33	23	23	20	1.97
90570537--90570684	40	3.6	41	89	4	228	22	20	27	28	1.99
90570874--90570981	7	15.1	7	72	3	63	23	0	35	41	1.55
90570905--90570945	22	1.9	21	90	5	64	24	0	24	51	1.49
90570903--90570961	21	2.8	22	77	12	70	23	0	32	44	1.54
90571161--90571203	14	3.0	14	89	3	59	18	0	39	41	1.51
90571166--90571256	7	13.0	7	75	9	78	20	0	39	39	1.53
90571850--90571887	17	2.1	19	85	9	53	39	13	2	44	1.57
90572296--90572338	17	2.4	18	80	3	52	25	37	0	37	1.56
90573859--90573993	69	2.0	69	86	0	189	36	20	13	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90575467--90575645	91	2.0	91	96	0	331	24	15	16	43	1.86
90581305--90581331	12	2.2	12	100	0	54	25	7	22	44	1.79
90584787--90584951	66	2.5	65	78	7	163	44	31	1	21	1.63
90585216--90585264	21	2.5	20	83	9	64	75	2	0	22	0.90
90585233--90585281	15	3.2	15	82	2	62	77	4	0	18	0.92
90585218--90585274	7	7.9	7	78	7	51	77	1	0	21	0.86
90586964--90587019	16	3.5	16	90	0	85	33	8	28	28	1.87
90587001--90587094	44	2.1	44	86	4	125	32	6	25	35	1.81
90587266--90587298	17	1.9	17	100	0	66	63	0	0	36	0.95
90591479--90591543	32	2.0	32	93	0	112	16	23	7	52	1.70
90591745--90591771	12	2.2	12	100	0	54	59	33	0	7	1.25
90593821--90593868	24	2.0	24	100	0	96	37	20	4	37	1.72
90595635--90595672	11	3.5	11	100	0	76	36	0	0	63	0.95
90595889--90595958	25	2.7	25	80	14	72	21	5	7	65	1.38
90596610--90596863	131	1.9	131	95	0	454	31	16	16	35	1.92
90597961--90598021	19	3.6	18	71	24	60	21	8	4	65	1.38
90597954--90598085	64	2.0	66	86	5	187	22	6	6	64	1.40
90597954--90598085	34	4.0	34	83	7	173	22	6	6	64	1.40
90600739--90600915	86	2.1	85	81	7	207	30	15	23	31	1.95
90600741--90600917	43	4.1	43	77	7	182	30	15	23	30	1.95
90605462--90605551	2	45.0	2	100	0	180	50	50	0	0	1.00
90607293--90607361	28	2.5	28	97	0	129	44	5	8	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90618741--90618810	37	1.9	36	91	2	113	41	15	11	31	1.83
90619384--90619416	13	2.5	13	95	0	57	30	54	9	6	1.56
90620112--90620156	21	2.2	20	84	4	54	66	13	15	4	1.39
90621344--90621398	21	2.7	20	77	5	56	23	5	5	65	1.35
90624856--90624912	23	2.5	23	78	18	66	57	3	1	36	1.26
90625349--90625398	24	2.1	24	92	0	82	34	28	16	22	1.95
90629016--90629068	25	2.1	25	85	3	70	37	1	3	56	1.28
90631282--90631315	2	17.0	2	100	0	68	50	0	0	50	1.00
90636931--90636976	18	2.9	15	82	17	65	52	4	4	39	1.41
90636937--90636980	18	2.4	18	100	0	88	61	6	4	27	1.41
90637381--90637409	2	14.5	2	100	0	58	48	0	0	51	1.00
90659211--90659426	75	2.9	74	88	1	299	28	16	23	31	1.96
90659031--90659581	235	2.4	228	80	11	571	27	16	20	35	1.94
90659336--90659519	87	2.1	88	80	8	207	28	15	17	39	1.90
90659426--90659581	74	2.1	74	91	2	251	30	15	16	37	1.90
90659609--90659759	82	1.9	81	91	1	248	30	17	21	30	1.96
90659518--90659923	188	2.2	181	80	10	416	29	17	18	33	1.94
90659764--90659799	14	2.6	14	90	0	54	25	16	5	52	1.65
90659775--90659945	88	1.9	90	82	5	213	28	18	19	32	1.96
90660126--90660303	52	3.3	52	74	13	187	27	24	16	30	1.97
90660073--90660390	111	2.9	111	92	0	521	29	21	17	31	1.96
90661328--90661362	17	2.1	17	94	0	61	45	5	0	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90673703--90673743	20	2.1	19	86	4	55	58	0	7	34	1.26
90677903--90677958	4	14.0	4	96	0	103	25	1	25	48	1.61
90684829--90685045	40	5.5	39	89	4	287	24	23	27	24	2.00
90684825--90685045	119	1.9	119	86	5	322	25	22	27	24	2.00
90690348--90690406	30	2.0	29	90	3	91	25	1	15	57	1.47
90690896--90690937	21	2.0	22	90	4	68	35	0	0	64	0.94
90690898--90690944	21	2.2	21	85	7	60	38	2	0	59	1.09
90690916--90691049	57	2.4	57	80	7	155	41	1	3	53	1.28
90690943--90691082	61	2.4	57	80	6	145	43	2	3	50	1.31
90691172--90691263	44	2.1	45	82	13	111	40	19	4	35	1.72
90693481--90693532	24	2.2	24	89	0	77	36	1	7	53	1.41
90695456--90695507	24	2.2	24	85	0	68	38	1	5	53	1.36
90697436--90697483	21	2.3	22	79	17	57	43	4	6	45	1.48
90697895--90697926	2	16.0	2	93	0	55	50	3	0	46	1.17
90698890--90698918	6	5.0	6	91	8	51	0	0	13	86	0.58
90703744--90703769	3	8.7	3	100	0	52	69	0	0	30	0.89
90705532--90705561	5	6.0	5	92	0	51	76	3	0	20	0.92
90707796--90707888	45	2.1	45	100	0	186	39	18	10	31	1.85
90718835--90718885	24	2.2	23	82	10	59	47	1	3	47	1.32
90726819--90726844	6	4.3	6	100	0	52	30	15	19	34	1.93
90733947--90733997	24	2.1	24	100	0	102	21	23	19	35	1.96
90737388--90737524	60	2.3	61	83	8	174	25	24	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90737387--90737488	28	3.5	27	71	19	80	24	28	20	26	1.99
90737529--90737571	19	2.2	20	83	4	52	34	25	18	20	1.96
90739749--90739777	15	1.9	15	100	0	58	58	0	0	41	0.98
90739869--90739912	19	2.4	18	85	7	54	40	9	0	50	1.34
90741843--90741895	27	2.0	27	84	0	70	30	13	22	33	1.92
90743995--90744075	41	2.0	42	85	2	110	33	23	17	25	1.96
90743962--90744133	45	4.0	44	70	15	117	32	25	17	24	1.97
90746591--90746668	27	2.9	27	78	1	95	21	16	20	41	1.91
90752437--90752464	2	14.0	2	100	0	56	50	0	0	50	1.00
90756928--90756974	24	2.0	24	82	0	58	46	19	6	27	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328