genome.fa.s7.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  187  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55695972--55696003	13	2.5	13	100	0	64	31	25	9	34	1.87
55707531--55707559	14	2.1	14	100	0	58	31	27	20	20	1.98
55712113--55712282	40	4.2	40	84	3	225	25	24	28	21	1.99
55720208--55720377	40	4.2	40	84	3	225	25	24	28	21	1.99
55723764--55723957	40	4.9	39	85	1	235	23	19	31	25	1.98
55723764--55723925	39	4.1	39	87	2	216	24	18	31	25	1.97
55723775--55723925	79	1.9	79	90	2	241	24	19	31	25	1.98
55725442--55725471	15	2.0	15	93	0	51	50	33	13	3	1.58
55729790--55729912	46	2.6	47	83	6	153	24	26	17	31	1.97
55731434--55731513	41	2.0	40	87	2	115	20	25	16	38	1.92
55745326--55745418	48	2.0	47	86	2	132	22	18	29	30	1.97
55747160--55747258	40	2.5	40	83	0	117	28	24	24	23	2.00
55747266--55747425	40	4.0	40	95	0	275	22	24	27	25	2.00
55756596--55756686	38	2.4	38	90	3	150	24	34	18	23	1.96
55756750--55757007	49	5.3	49	96	0	462	31	29	8	31	1.86
55760640--55760769	40	3.2	40	83	2	172	25	28	23	23	1.99
55770795--55770915	40	3.0	39	83	4	136	23	28	23	23	1.99
55774091--55774551	40	11.6	40	87	3	574	27	27	20	24	1.99
55791215--55791366	80	1.9	80	84	8	202	28	21	25	24	1.99
55791257--55791368	40	2.8	40	91	0	170	27	21	27	23	1.99
55791213--55791383	80	2.1	81	81	9	199	28	21	26	24	1.99
55791213--55791383	40	4.3	39	78	10	168	28	21	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55793982--55794189	79	2.6	80	78	6	190	24	30	23	22	1.99
55794082--55794189	40	2.7	40	86	0	135	21	30	25	23	1.99
55801955--55802162	79	2.6	80	78	6	190	24	30	23	22	1.99
55802055--55802162	40	2.7	40	86	0	135	21	30	25	23	1.99
55810339--55810408	27	2.5	28	95	2	124	28	14	27	30	1.95
55810339--55810420	27	3.0	27	85	8	78	29	15	24	30	1.96
55813560--55813654	42	2.2	42	83	5	120	35	24	14	25	1.93
55813537--55813693	43	3.6	44	76	9	135	33	24	15	26	1.95
55818441--55818583	40	3.6	38	80	11	137	27	25	27	19	1.99
55818481--55818606	40	3.2	40	80	2	137	24	24	28	22	1.99
55820374--55820421	25	1.9	25	86	0	69	33	25	16	25	1.96
55820465--55820543	20	4.0	20	98	0	149	37	10	20	31	1.86
55820469--55820543	11	7.4	11	68	17	63	38	10	20	30	1.86
55820594--55820735	24	6.0	24	88	8	193	28	22	22	26	1.99
55820928--55820991	31	2.1	31	93	0	110	39	14	21	25	1.91
55827406--55827512	44	2.5	42	80	6	115	33	25	18	22	1.97
55832741--55832955	40	5.4	40	91	3	303	26	27	22	22	1.99
55834892--55835076	79	2.3	80	80	7	189	24	27	23	24	2.00
55834892--55835076	40	4.7	40	76	6	162	24	27	23	24	2.00
55837469--55837510	10	4.1	10	84	6	57	0	19	0	80	0.70
55844041--55844258	40	5.5	40	92	2	325	25	28	23	22	1.99
55845516--55845550	10	3.3	10	85	14	52	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55845515--55845554	20	2.1	19	90	4	62	0	17	0	82	0.67
55849000--55849071	24	2.8	26	81	6	94	26	23	16	33	1.96
55849035--55849114	23	3.4	23	80	16	85	25	22	17	35	1.95
55852269--55852423	42	3.7	42	83	3	177	30	23	14	30	1.94
55852865--55852903	19	2.1	19	95	0	69	33	5	30	30	1.79
55857220--55857262	6	7.0	6	83	2	50	13	6	2	76	1.08
55860273--55860348	38	2.0	38	82	5	91	38	17	19	25	1.93
55863960--55864007	25	1.9	25	83	8	62	18	6	10	64	1.45
55865906--55866014	56	2.0	53	82	12	132	36	18	16	28	1.92
55867208--55867374	40	4.2	40	78	6	160	25	22	27	24	2.00
55875192--55875357	40	4.2	40	78	8	162	25	22	27	24	2.00
55875192--55875341	79	1.9	79	84	5	205	26	22	27	24	2.00
55884290--55884456	40	4.2	40	81	2	176	24	27	22	25	2.00
55884306--55884456	80	1.9	79	83	6	198	23	27	22	25	2.00
55889951--55890056	43	2.5	43	85	0	149	30	24	16	29	1.96
55893567--55893660	18	5.4	18	91	3	131	35	25	10	28	1.89
55893568--55893649	27	3.0	27	76	0	101	32	26	12	28	1.92
55899947--55899984	14	2.6	15	83	4	51	31	0	0	68	0.90
55900721--55900776	21	2.7	20	84	13	69	78	0	3	17	0.89
55900737--55900775	10	3.8	10	80	6	51	82	0	0	17	0.68
55904802--55904851	18	2.8	18	72	22	50	32	0	22	46	1.52
55904823--55904875	20	2.7	20	85	2	63	30	5	22	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55916979--55917146	40	4.2	40	79	6	169	26	23	26	23	2.00
55921778--55921839	30	2.1	30	100	0	124	25	9	12	51	1.70
55923722--55923762	18	2.3	18	100	0	82	34	12	4	48	1.62
55927752--55927927	46	3.8	46	80	12	225	21	21	28	28	1.98
55927748--55927919	93	1.8	93	96	0	317	20	21	29	27	1.98
55930874--55930942	15	4.6	15	83	0	84	11	17	13	57	1.64
55930865--55930952	30	3.0	30	81	8	99	10	17	15	56	1.66
55933335--55933510	46	3.8	46	80	12	225	21	21	28	28	1.98
55933331--55933502	93	1.8	93	96	0	317	20	21	29	27	1.98
55935382--55935528	39	3.8	39	89	3	217	25	20	31	23	1.98
55935396--55935567	77	2.2	77	83	6	206	23	22	31	22	1.98
55943391--55943553	39	4.2	39	93	0	263	23	20	31	24	1.98
55943391--55943583	39	4.9	39	90	0	251	23	21	31	23	1.98
55947533--55947742	40	5.2	40	87	2	305	25	24	28	21	1.99
55955667--55955876	40	5.2	40	87	2	305	25	24	28	21	1.99
55959615--55959715	28	3.5	28	86	6	114	29	13	26	29	1.94
55959644--55959715	29	2.5	28	91	6	110	30	13	26	29	1.94
55961988--55962041	22	2.6	21	76	5	56	40	3	3	51	1.37
55970726--55970854	40	3.3	40	82	7	140	26	25	24	23	2.00
55978771--55978959	39	4.9	39	91	3	301	24	22	31	22	1.98
55983402--55983502	28	3.5	29	86	6	125	29	27	13	28	1.95
55990928--55991028	28	3.5	29	86	6	125	29	27	13	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55994243--55994294	22	2.4	22	100	0	104	36	15	5	42	1.71
55995508--55995557	26	1.9	26	84	8	66	20	18	22	40	1.92
55996812--55996912	24	4.2	23	78	13	114	21	35	4	37	1.75
55998854--55999047	40	4.9	39	85	1	226	24	20	29	25	1.99
55998865--55999014	79	1.9	79	88	2	230	25	20	29	25	1.99
56006980--56007111	29	4.5	29	97	1	246	24	24	14	37	1.92
56006980--56007111	59	2.3	59	97	1	248	24	24	14	37	1.92
56011902--56012108	40	5.2	39	83	1	200	25	26	22	26	2.00
56011902--56012106	80	2.6	81	83	4	238	24	26	22	26	2.00
56014655--56014837	40	4.6	39	86	2	240	24	19	30	25	1.98
56014666--56014818	79	1.9	79	90	2	245	24	20	30	24	1.98
56017457--56017520	32	2.0	32	93	0	110	26	26	12	34	1.92
56017599--56017758	42	3.8	42	83	6	198	33	24	16	25	1.96
56017589--56017755	84	2.0	84	84	4	221	33	23	16	25	1.96
56022930--56022963	17	1.9	18	88	5	52	11	23	44	20	1.84
56023022--56023142	29	4.2	28	81	4	134	29	14	28	27	1.96
56027536--56027625	29	3.1	29	82	1	101	27	15	27	28	1.96
56027549--56027650	29	3.6	29	78	6	100	24	15	31	28	1.96
56028464--56028501	20	1.9	20	88	0	58	34	2	13	50	1.55
56030116--56030184	28	2.5	28	95	2	122	43	27	10	18	1.82
56037842--56038004	39	4.2	39	91	0	263	22	20	33	23	1.97
56037842--56038035	39	4.9	39	89	0	253	22	21	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56039533--56039570	20	1.9	20	88	0	58	34	2	10	52	1.50
56041183--56041251	28	2.5	28	95	2	122	43	27	10	18	1.82
56045354--56045520	40	4.2	40	78	6	160	25	22	27	24	2.00
56053098--56053226	40	3.2	40	80	8	138	23	22	28	25	1.99
56058968--56059135	54	3.1	53	71	6	149	35	16	25	22	1.95
56066532--56066561	13	2.3	13	94	0	51	10	26	30	33	1.89
56067377--56067401	9	2.8	9	100	0	50	8	0	0	92	0.40
56068986--56069018	13	2.5	13	100	0	66	33	30	30	6	1.82
56076177--56076201	12	2.1	12	100	0	50	68	0	32	0	0.90
56082750--56082864	27	4.3	27	82	9	130	40	13	12	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328