genome.fa.s7.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  131  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37965469--37965544	25	3.0	25	94	0	125	28	25	19	26	1.99
37965584--37965622	10	3.8	10	93	6	69	33	17	17	30	1.94
37965583--37965622	21	1.9	21	100	0	80	35	17	17	30	1.93
37965667--37965736	25	2.9	24	93	4	122	24	27	22	25	2.00
37965667--37965749	24	3.4	24	90	6	123	27	24	22	25	2.00
37965667--37965761	49	1.9	49	83	8	122	26	25	23	25	2.00
37969639--37969787	80	1.9	80	81	2	183	22	30	24	22	1.99
37969680--37969787	40	2.7	38	85	8	128	21	29	25	23	1.99
37977740--37977888	80	1.9	80	81	2	183	22	30	24	22	1.99
37977781--37977888	40	2.7	38	85	8	128	21	29	25	23	1.99
37984832--37984882	25	2.0	25	92	0	84	31	23	19	25	1.98
37984922--37984960	10	3.8	10	90	6	60	33	17	15	33	1.92
37984921--37984960	21	1.9	21	94	0	71	35	17	15	32	1.91
37985005--37985111	24	4.4	24	88	6	146	27	23	21	28	1.99
37988429--37988592	71	2.3	71	100	0	328	18	28	17	35	1.94
37988429--37988626	71	2.8	70	91	3	258	20	28	17	33	1.95
37991329--37991495	40	4.2	40	82	2	185	24	26	22	26	2.00
37999332--37999498	40	4.2	40	82	2	185	24	26	22	26	2.00
38007218--38007381	71	2.3	71	100	0	328	18	28	17	35	1.94
38007218--38007415	71	2.8	70	91	3	258	20	28	17	33	1.95
38012006--38012060	26	2.1	26	96	0	101	40	23	9	27	1.85
38015033--38015102	27	2.5	28	88	2	106	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38015033--38015114	27	3.0	27	80	8	103	29	13	23	34	1.93
38022941--38023010	27	2.5	28	88	2	106	28	14	25	31	1.95
38022941--38023022	27	3.0	27	80	8	103	29	13	23	34	1.93
38027979--38028048	25	2.8	25	91	0	113	25	22	18	32	1.97
38030148--38030247	42	2.4	42	88	3	139	22	31	22	25	1.98
38031784--38031888	43	2.5	43	83	7	117	29	26	20	23	1.99
38032306--38032330	8	3.1	8	100	0	50	24	24	0	52	1.48
38033712--38033750	20	2.0	20	85	10	53	51	25	5	17	1.66
38035608--38035663	28	2.0	28	82	6	69	48	23	0	28	1.51
38042809--38043197	47	8.3	47	92	0	598	34	8	30	27	1.86
38043115--38043194	25	3.3	24	67	18	67	35	3	30	31	1.75
38045176--38045323	40	3.8	38	78	12	149	22	27	23	26	1.99
38053158--38053322	40	4.2	39	80	6	174	23	27	22	26	2.00
38059141--38059290	40	3.8	40	77	12	148	22	27	24	26	1.99
38059141--38059289	80	1.9	79	84	6	203	21	27	24	26	1.99
38062872--38062899	13	2.2	13	100	0	56	39	14	21	25	1.91
38063239--38063363	48	2.6	48	83	1	153	32	13	22	32	1.93
38063341--38063415	38	2.0	38	91	0	123	32	16	24	28	1.96
38066283--38066336	26	2.1	26	93	6	92	18	16	22	42	1.89
38066353--38066405	15	3.5	15	82	5	63	13	15	11	60	1.59
38066349--38066405	30	1.9	30	85	7	80	12	14	15	57	1.65
38068284--38068424	48	3.0	48	84	1	167	31	16	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38070025--38070083	25	2.4	25	79	0	73	27	20	25	27	1.99
38076023--38076069	24	2.0	24	95	0	85	23	17	17	42	1.88
38085423--38085524	22	4.5	22	80	10	109	22	21	19	36	1.95
38085388--38085526	45	3.1	45	79	14	151	24	22	16	36	1.94
38085363--38085520	22	6.8	24	76	11	98	25	22	17	34	1.96
38093057--38093133	24	3.2	25	78	9	79	25	23	18	32	1.97
38093057--38093167	47	2.3	50	80	10	135	27	22	18	32	1.97
38094806--38094928	45	2.7	46	75	2	133	21	20	11	46	1.82
38097381--38097664	24	11.9	24	98	0	507	20	18	25	35	1.96
38105436--38105726	121	2.4	120	95	1	521	20	18	25	36	1.95
38105436--38105726	24	12.1	24	96	1	503	20	18	25	36	1.95
38107272--38107456	40	4.6	39	85	4	217	28	22	25	23	2.00
38107271--38107477	80	2.6	80	83	4	247	26	22	26	25	2.00
38107270--38107477	40	5.2	39	83	5	211	26	22	25	25	2.00
38115306--38115490	40	4.6	39	85	4	217	28	22	25	23	2.00
38115305--38115511	80	2.6	80	83	4	247	26	22	26	25	2.00
38115304--38115511	40	5.2	39	83	5	211	26	22	25	25	2.00
38118271--38118304	2	17.0	2	100	0	68	50	0	0	50	1.00
38124579--38124627	21	2.4	20	83	6	62	20	10	8	61	1.53
38129875--38130109	116	2.0	116	97	0	443	27	14	23	34	1.93
38137898--38137936	13	3.0	13	92	0	60	17	28	35	17	1.94
38140584--38140691	41	2.6	42	79	7	112	26	14	25	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38142991--38143064	30	2.5	31	91	4	116	32	14	21	31	1.94
38143396--38143613	46	4.7	47	76	7	160	25	18	30	25	1.98
38147488--38147856	182	2.0	183	93	0	623	33	14	27	24	1.94
38151254--38151417	46	3.5	46	82	8	181	27	17	30	25	1.97
38157756--38157899	39	3.7	39	90	0	234	26	21	29	22	1.99
38157757--38157939	78	2.3	79	89	1	269	24	22	29	22	1.99
38164769--38164911	39	3.7	39	90	2	234	26	20	30	22	1.99
38164770--38164951	77	2.3	79	89	2	269	24	22	29	23	1.99
38169008--38169149	40	3.5	39	78	4	140	27	16	25	30	1.96
38170325--38171356	348	3.0	348	99	0	2048	27	16	24	31	1.96
38172157--38172230	38	1.9	38	88	0	112	40	14	13	31	1.85
38180859--38180935	39	2.0	39	92	0	127	50	19	0	29	1.48
38188018--38188225	40	5.2	40	84	4	269	23	21	28	26	1.99
38188014--38188225	80	2.7	80	88	5	322	23	21	28	26	1.99
38196171--38196377	40	5.2	40	88	2	285	23	21	28	26	1.99
38196167--38196377	80	2.7	80	90	2	329	23	21	28	26	1.99
38203059--38203262	40	5.1	40	87	2	243	25	28	22	24	1.99
38204664--38204688	2	12.5	2	100	0	50	48	0	0	52	1.00
38206858--38206931	29	2.6	29	95	0	139	27	14	31	27	1.95
38206915--38206990	29	2.6	29	78	0	89	22	19	35	22	1.96
38206858--38206990	58	2.3	58	80	2	133	24	17	33	24	1.96
38214440--38214513	29	2.6	29	95	0	139	27	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38214497--38214572	29	2.6	29	78	0	89	22	19	35	22	1.96
38214440--38214572	58	2.3	58	80	2	133	24	17	33	24	1.96
38222302--38222375	29	2.6	29	95	0	139	27	14	31	27	1.95
38222359--38222432	27	2.6	29	78	8	89	22	20	35	21	1.96
38227267--38227460	50	3.9	49	77	6	185	24	18	28	28	1.98
38229861--38229970	31	3.5	31	94	0	193	28	25	16	30	1.97
38229994--38230085	42	2.2	42	90	0	139	33	22	14	29	1.93
38230084--38230385	148	2.0	148	98	0	586	29	33	15	21	1.94
38230378--38230577	26	7.8	26	87	3	273	26	22	23	28	1.99
38231362--38231445	27	3.1	26	83	6	105	25	26	17	30	1.97
38231484--38231747	27	9.7	27	74	4	102	32	10	20	37	1.86
38232797--38232907	46	2.4	46	81	0	132	29	21	19	28	1.98
38239954--38239994	17	2.4	17	100	0	82	43	12	12	31	1.79
38241163--38241212	24	2.1	24	85	7	66	22	22	22	34	1.97
38244584--38244627	3	14.7	3	95	0	79	29	0	0	70	0.88
38246868--38246937	29	2.4	29	90	6	108	28	14	27	30	1.95
38251752--38251969	40	5.5	40	88	2	298	24	22	26	25	2.00
38259918--38260135	40	5.5	40	92	2	334	24	23	27	24	2.00
38268916--38268953	18	2.1	18	95	0	67	42	21	5	31	1.75
38269136--38269330	91	2.1	92	86	2	277	29	22	18	29	1.97
38272452--38272477	13	2.0	13	100	0	52	30	23	0	46	1.53
38274819--38274978	29	5.5	29	82	4	180	25	31	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38282905--38283064	29	5.5	29	82	4	180	25	31	16	26	1.97
38290992--38291150	29	5.5	29	82	5	180	25	30	16	26	1.97
38300065--38300127	33	1.9	33	96	0	117	25	12	9	52	1.69
38302071--38302118	17	2.7	17	83	6	60	58	6	4	31	1.42
38304965--38305026	31	2.0	31	100	0	124	41	12	16	29	1.85
38310457--38310517	31	2.0	31	93	6	106	32	22	8	36	1.84
38323828--38323929	28	3.5	29	81	6	109	28	27	14	29	1.95
38331691--38331791	29	3.5	29	81	9	116	28	26	13	30	1.94
38331690--38331791	28	3.5	29	81	6	109	28	27	13	30	1.94
38333196--38333362	40	4.2	40	82	2	185	24	26	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328