genome.fa.s7.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  168  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49382334--49382671	172	2.0	172	96	0	622	23	26	28	22	1.99
49399226--49399250	13	1.9	13	100	0	50	16	16	40	28	1.89
49403949--49403978	14	2.1	15	93	6	53	20	10	13	56	1.65
49405680--49405803	46	2.7	46	92	2	198	30	26	21	20	1.98
49412682--49412852	93	1.8	93	94	0	306	28	29	21	21	1.98
49412677--49412849	46	3.7	46	80	13	219	29	28	20	21	1.98
49415711--49415834	29	4.4	28	81	2	131	29	15	26	28	1.96
49418592--49418626	17	2.1	17	94	0	61	11	20	42	25	1.85
49434606--49434678	34	2.2	33	87	2	101	28	21	21	27	1.99
49440433--49440640	79	2.6	80	78	6	190	24	30	23	22	1.99
49440533--49440640	40	2.7	40	86	0	135	21	30	25	23	1.99
49447759--49447922	71	2.3	71	100	0	328	18	28	17	35	1.94
49447759--49447956	71	2.8	70	91	3	258	20	28	17	33	1.95
49454859--49455022	71	2.3	71	100	0	328	18	28	17	35	1.94
49454859--49455056	71	2.8	70	91	3	258	20	28	17	33	1.95
49456498--49456539	2	21.0	2	95	0	75	50	2	0	47	1.14
49456992--49457090	28	3.5	28	87	4	119	27	15	27	30	1.96
49459258--49459301	18	2.8	15	78	21	54	27	4	27	40	1.75
49463518--49463608	45	2.0	45	89	0	137	35	23	15	26	1.94
49474348--49474519	93	1.8	93	96	0	317	27	30	22	20	1.98
49474340--49474515	46	3.8	46	81	10	232	28	29	21	20	1.98
49476896--49476983	29	3.0	29	80	8	97	56	15	17	10	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49476896--49476974	15	5.4	15	77	10	83	58	13	17	10	1.63
49476907--49476983	15	5.2	15	75	9	77	55	15	16	11	1.68
49479932--49480103	93	1.8	93	96	0	317	27	30	22	20	1.98
49479924--49480099	46	3.8	46	81	10	232	28	29	21	20	1.98
49483812--49483847	18	1.9	19	88	5	56	41	0	5	52	1.24
49492437--49492550	43	2.7	41	75	12	106	28	28	20	22	1.98
49498129--49498281	39	3.9	39	92	0	243	24	20	31	23	1.98
49498130--49498312	39	4.6	39	88	0	240	24	22	30	22	1.99
49498136--49498350	78	2.7	79	81	5	177	25	22	30	22	1.99
49506157--49506226	27	2.5	28	95	2	124	28	14	27	30	1.95
49506157--49506238	27	3.0	27	85	8	78	29	15	24	30	1.96
49512732--49512878	39	3.8	38	81	10	158	24	29	22	23	1.99
49520679--49520779	40	2.5	40	85	1	132	24	28	22	23	1.99
49520679--49520827	78	1.9	79	81	9	180	24	28	22	23	1.99
49520686--49520829	40	3.7	38	81	10	130	25	27	22	23	2.00
49529664--49529789	39	3.2	39	93	0	207	26	30	21	20	1.98
49532191--49532238	20	2.4	20	96	0	87	25	33	31	10	1.89
49535396--49535626	24	9.6	24	97	0	417	36	25	16	20	1.94
49543324--49543578	24	10.6	24	98	0	465	36	25	17	20	1.94
49547234--49547474	49	4.9	50	79	5	256	26	17	26	30	1.97
49547243--49547465	101	2.2	98	84	7	281	26	16	26	30	1.97
49557293--49557364	31	2.3	31	85	0	90	23	25	34	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49573583--49573700	47	2.5	47	81	5	130	25	30	18	25	1.98
49575112--49575145	17	2.1	16	88	5	50	47	17	14	20	1.83
49576793--49576968	46	3.8	46	81	10	232	20	21	29	28	1.98
49576789--49576960	93	1.8	93	96	0	317	20	22	30	27	1.98
49579919--49579998	15	5.4	15	77	7	83	10	18	13	57	1.64
49579910--49579997	30	3.0	30	80	11	92	10	18	15	55	1.68
49582359--49582534	46	3.8	46	81	10	232	20	21	29	28	1.98
49582355--49582526	93	1.8	93	96	0	317	20	22	30	27	1.98
49584724--49584833	39	2.8	39	83	9	134	28	22	26	22	1.99
49584678--49584863	40	4.8	38	75	11	146	29	22	25	23	1.99
49586710--49587043	50	6.8	50	78	6	328	28	18	28	24	1.98
49586724--49587001	145	1.9	145	85	2	389	28	19	27	24	1.98
49586718--49587049	95	3.4	100	78	9	283	27	19	28	24	1.98
49589103--49589142	21	2.0	20	85	14	55	35	0	12	52	1.39
49590599--49590663	22	3.0	22	71	13	62	32	21	24	21	1.98
49593647--49593752	41	2.6	41	92	0	176	27	30	19	22	1.98
49594010--49594064	27	2.0	27	89	0	83	36	12	10	40	1.79
49597420--49597597	40	4.5	40	80	4	175	23	25	22	28	1.99
49604648--49604816	40	4.2	40	80	4	173	23	26	21	28	1.99
49618240--49618312	29	2.5	29	100	0	146	28	15	28	27	1.96
49618403--49618439	2	18.5	2	100	0	74	48	0	0	51	1.00
49620840--49620880	21	2.0	21	100	0	82	36	24	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49621496--49621651	79	2.0	81	81	7	185	33	21	7	37	1.82
49627023--49627159	55	2.5	55	77	3	141	15	26	29	29	1.96
49629426--49629633	40	5.2	40	80	3	231	25	26	22	25	2.00
49635020--49635165	43	3.4	43	80	12	174	30	22	15	31	1.95
49636982--49637029	24	2.0	24	91	0	78	43	12	8	35	1.73
49640777--49640905	40	3.3	40	81	9	149	24	25	27	21	1.99
49643039--49643166	65	2.0	65	96	0	238	25	16	17	41	1.89
49647541--49647638	28	3.5	28	84	4	108	29	16	24	29	1.96
49655225--49655322	28	3.5	28	84	4	108	29	16	24	29	1.96
49658704--49658775	34	2.1	35	82	7	85	43	11	25	20	1.85
49661394--49661521	65	2.0	65	98	0	247	24	14	17	42	1.87
49665137--49665179	21	2.0	21	100	0	86	32	27	20	18	1.96
49665191--49665467	39	7.1	39	91	0	437	24	28	24	22	1.99
49669635--49669707	29	2.5	29	90	0	92	24	31	16	27	1.96
49670881--49670936	24	2.3	24	84	9	69	7	16	1	75	1.11
49684108--49684366	46	5.7	46	83	6	294	27	18	30	22	1.97
49684108--49684364	91	2.8	89	81	10	268	28	19	30	22	1.98
49684108--49684410	46	6.6	44	77	12	211	27	18	31	22	1.97
49684382--49684557	50	3.6	50	87	5	225	28	18	28	25	1.98
49687903--49688082	40	4.5	40	83	2	200	22	26	23	27	2.00
49689782--49689925	40	3.6	39	79	4	128	22	28	23	25	1.99
49691919--49692082	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49691919--49692116	71	2.8	70	91	3	258	20	28	17	33	1.95
49712097--49712236	56	2.5	56	86	2	190	29	15	22	33	1.94
49712404--49712434	16	1.9	16	93	0	53	41	6	16	35	1.74
49716081--49716173	27	3.5	26	84	8	123	39	19	23	17	1.92
49717975--49718087	39	2.9	39	91	1	172	22	21	32	23	1.98
49726802--49727024	79	2.8	77	83	9	272	26	26	21	25	2.00
49726802--49727024	39	5.7	39	86	7	267	26	26	21	25	2.00
49726802--49727021	118	1.9	119	83	8	288	26	26	21	25	1.99
49736945--49737072	48	2.7	47	83	1	166	32	12	21	33	1.91
49737036--49737110	38	2.0	38	89	0	114	30	16	24	29	1.96
49741292--49741351	21	2.9	21	83	14	79	1	46	23	28	1.62
49741765--49741793	14	2.1	14	93	6	51	62	6	0	31	1.22
49741960--49741998	17	2.4	16	86	4	51	51	0	12	35	1.40
49746889--49747012	9	14.0	9	68	11	60	34	1	18	45	1.59
49746908--49746981	36	2.1	36	92	0	121	35	1	17	45	1.57
49747010--49747044	13	2.6	13	90	4	52	37	2	8	51	1.47
49746939--49747085	52	2.8	52	83	8	172	34	0	14	50	1.49
49748142--49748181	19	2.1	19	100	0	80	35	5	17	42	1.71
49751091--49751137	16	2.9	16	75	12	51	19	4	4	72	1.18
49751179--49751215	13	2.7	14	91	8	67	51	5	0	43	1.24
49751330--49751401	7	10.1	7	73	8	56	40	37	0	22	1.54
49751353--49751408	27	2.0	28	82	3	69	44	32	1	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49751460--49751492	15	2.2	15	94	0	57	51	33	0	15	1.43
49751630--49751675	21	2.2	21	84	0	56	47	23	2	26	1.63
49751900--49751940	21	1.9	22	85	5	57	41	34	0	24	1.55
49755400--49755501	40	2.5	40	85	0	123	30	22	26	20	1.98
49755439--49755567	40	3.2	40	84	6	163	24	23	27	24	2.00
49774702--49774853	39	3.9	39	93	0	250	23	22	31	22	1.98
49782961--49783142	39	4.6	39	90	0	247	21	31	23	23	1.98
49782991--49783142	39	3.9	39	93	0	250	22	31	22	23	1.98
49790951--49791037	43	2.0	43	93	0	147	26	21	28	22	1.99
49796463--49796658	50	3.9	49	81	4	205	26	18	27	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328