genome.fa.s7.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  143  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41690857--41691023	40	4.2	40	81	2	167	23	26	22	26	2.00
41690873--41691023	80	1.9	79	83	6	198	23	27	23	26	2.00
41696579--41696648	27	2.5	28	95	2	124	28	14	27	30	1.95
41696579--41696660	27	3.0	27	85	8	78	29	15	24	30	1.96
41706202--41706304	51	2.0	51	98	0	197	41	7	14	35	1.75
41707802--41707909	40	2.7	38	85	8	128	21	29	25	23	1.99
41707761--41707909	80	1.9	80	81	2	183	22	30	24	22	1.99
41715861--41716009	80	1.9	80	81	2	183	22	30	24	22	1.99
41715902--41716009	40	2.7	38	85	8	128	21	29	25	23	1.99
41717708--41717781	29	2.6	29	95	0	139	27	31	14	27	1.95
41717649--41717781	58	2.3	58	80	2	133	24	33	17	24	1.96
41725572--41725645	29	2.6	29	95	0	139	27	31	14	27	1.95
41725513--41725645	58	2.3	58	80	2	133	24	33	17	24	1.96
41733451--41733524	29	2.6	29	95	0	139	27	31	14	27	1.95
41733392--41733524	58	2.3	58	80	2	133	24	33	17	24	1.96
41739408--41739581	49	3.7	49	87	7	238	27	19	30	22	1.98
41746588--41746645	30	1.9	30	100	0	116	31	15	27	25	1.96
41746970--41747134	46	3.5	46	81	4	188	29	21	28	20	1.98
41754629--41754800	93	1.8	93	93	0	299	28	29	20	21	1.98
41754622--41754797	46	3.8	46	78	12	198	29	28	20	21	1.98
41754673--41754816	46	3.1	44	76	15	141	29	28	20	22	1.98
41756097--41756295	46	4.2	48	75	10	146	30	17	27	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41756186--41756350	49	3.3	49	81	0	177	30	22	23	23	1.99
41759612--41759726	55	2.1	55	90	0	176	39	13	27	19	1.90
41762229--41762333	29	3.6	29	77	2	86	25	33	17	23	1.96
41762267--41762389	58	2.1	59	87	3	178	25	30	15	28	1.96
41762288--41762389	29	3.5	29	95	0	186	26	29	14	29	1.95
41770187--41770252	29	2.3	29	81	0	78	22	36	19	21	1.95
41772499--41772603	29	3.6	29	77	2	86	25	33	17	23	1.96
41772537--41772659	58	2.1	59	87	3	178	25	30	15	28	1.96
41772558--41772659	29	3.5	29	95	0	186	26	29	14	29	1.95
41783800--41783927	25	5.1	25	77	12	102	27	24	16	32	1.96
41791305--41791352	25	2.0	24	88	12	71	22	12	2	62	1.40
41791309--41791362	25	2.1	25	83	10	65	20	12	5	61	1.52
41792925--41792972	23	2.1	23	100	0	96	25	8	20	45	1.79
41816950--41817107	27	5.9	27	74	3	129	37	21	10	29	1.87
41816955--41817109	54	2.9	54	80	0	166	38	22	10	29	1.87
41817089--41817152	27	2.4	27	89	0	92	37	18	17	26	1.93
41817308--41817371	27	2.4	27	84	2	85	28	26	15	29	1.96
41817561--41817653	33	2.8	33	82	6	91	25	19	26	27	1.99
41821608--41821670	24	2.6	24	100	0	126	34	26	17	20	1.95
41824369--41824472	29	3.5	29	90	2	109	25	30	15	28	1.96
41824339--41824472	60	2.3	58	80	5	144	24	32	15	26	1.95
41824390--41824472	29	2.9	29	98	0	157	26	30	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41824590--41824618	2	14.5	2	100	0	58	51	0	0	48	1.00
41830151--41830310	29	5.5	29	82	4	180	25	31	16	26	1.97
41840636--41840765	40	3.3	39	76	8	136	23	27	23	24	2.00
41840652--41840803	40	3.8	40	78	6	148	22	26	23	27	1.99
41840652--41840801	80	1.9	80	83	8	198	22	26	24	27	1.99
41843902--41843946	21	2.3	20	85	11	58	26	6	6	60	1.47
41847392--41847436	19	2.4	19	85	7	56	26	24	11	37	1.89
41866024--41866298	44	6.2	44	71	9	173	29	17	26	27	1.98
41865930--41866392	178	2.6	178	89	0	685	28	19	26	25	1.99
41866224--41866315	44	2.1	44	83	4	114	29	15	27	28	1.96
41874973--41875075	29	3.6	28	80	5	116	29	33	16	21	1.95
41882984--41883086	29	3.6	28	80	5	116	29	33	16	21	1.95
41886361--41886463	29	3.6	28	80	5	116	29	33	16	21	1.95
41894374--41894476	29	3.6	28	80	5	116	29	33	16	21	1.95
41919467--41919700	48	4.9	48	74	2	200	28	19	25	27	1.99
41919467--41919692	96	2.4	96	83	1	265	28	19	25	27	1.98
41924177--41924307	47	2.8	48	76	5	133	25	14	25	34	1.94
41925272--41925329	28	2.1	28	86	0	80	20	24	32	22	1.98
41926497--41926529	17	1.9	17	100	0	66	30	0	6	63	1.18
41933650--41933801	40	3.8	40	82	5	155	23	28	21	26	1.99
41941628--41941778	40	3.8	40	82	6	155	23	28	21	26	1.99
41947781--41947880	47	2.1	47	98	1	193	42	20	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41948707--41948771	13	5.1	13	80	9	62	36	1	3	58	1.23
41949479--41949503	13	1.9	13	100	0	50	24	0	4	72	1.02
41954547--41954713	40	4.2	40	80	2	167	23	27	23	25	2.00
41962513--41962679	40	4.2	40	80	2	167	23	27	23	25	2.00
41970730--41970955	40	5.7	40	92	1	321	26	26	22	23	2.00
41970704--41970955	80	3.2	79	87	3	321	26	26	22	24	2.00
41979918--41979948	14	2.2	14	94	0	53	9	25	32	32	1.88
41983241--41983399	43	3.7	43	78	10	155	30	25	20	23	1.99
41983282--41983410	44	3.0	43	82	7	129	31	25	21	20	1.98
41984817--41984856	11	3.7	11	83	3	55	27	22	2	47	1.64
41992359--41992533	46	3.8	46	77	7	210	28	26	21	23	1.99
41992364--41992534	93	1.8	93	93	0	297	28	27	21	22	1.99
41994592--41994651	27	2.2	27	84	0	75	43	16	11	28	1.83
41998483--41998554	28	2.5	29	86	4	92	27	13	27	30	1.94
42003684--42003712	11	2.6	11	100	0	58	24	10	37	27	1.88
42005290--42005340	22	2.4	22	86	3	68	11	29	39	19	1.87
42014265--42014293	13	2.2	13	100	0	58	31	0	13	55	1.39
42014587--42014628	3	14.0	3	94	0	75	33	0	2	64	1.07
42016697--42016866	80	2.1	80	79	3	191	27	26	20	25	1.99
42016702--42016866	40	4.2	40	79	2	172	27	27	20	25	1.99
42024050--42024078	13	2.2	13	100	0	58	31	0	13	55	1.39
42030052--42030077	9	2.9	9	100	0	52	69	19	11	0	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42030426--42030464	20	1.9	21	89	5	62	30	20	33	15	1.94
42033704--42033750	22	2.1	22	88	7	69	23	6	38	31	1.80
42035102--42035199	28	3.5	28	84	4	108	29	16	24	29	1.96
42042779--42042876	28	3.5	28	84	4	108	29	16	24	29	1.96
42047250--42047293	2	22.0	2	85	0	61	50	6	0	43	1.29
42047250--42047293	12	3.5	12	88	11	70	50	6	0	43	1.29
42047250--42047293	14	3.3	14	93	6	74	50	6	0	43	1.29
42052284--42052325	2	21.0	2	85	0	57	50	7	0	42	1.30
42052284--42052325	12	3.5	12	100	0	84	50	7	0	42	1.30
42054775--42054875	39	2.5	40	85	1	132	30	22	24	21	1.99
42054775--42054957	40	4.6	40	82	3	181	27	22	26	23	1.99
42062806--42062906	39	2.5	40	85	1	132	30	22	24	21	1.99
42062806--42062988	40	4.6	40	82	3	181	27	22	26	23	1.99
42064491--42064555	15	4.5	15	77	16	66	26	7	1	64	1.29
42064474--42064565	26	3.4	28	76	18	88	27	7	2	63	1.33
42064508--42064552	12	3.5	12	84	9	54	24	8	0	66	1.20
42064494--42064565	23	3.0	23	70	18	56	27	6	1	63	1.28
42064690--42064743	3	18.0	3	100	0	108	33	0	0	66	0.92
42064946--42065035	3	30.3	3	76	10	60	23	3	6	66	1.30
42064933--42065008	9	8.4	9	73	4	64	23	5	6	64	1.38
42064933--42064987	18	3.0	18	89	2	83	25	3	7	63	1.37
42064948--42065032	15	5.9	15	77	15	74	22	3	7	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42067712--42068062	27	13.0	27	85	4	458	28	23	9	39	1.85
42068072--42068264	27	7.2	27	82	3	210	36	16	19	27	1.93
42068408--42068438	16	1.9	16	93	0	53	29	19	16	35	1.93
42068469--42068547	27	3.0	26	83	5	95	20	20	21	37	1.94
42068635--42068693	22	2.7	22	81	0	64	20	25	22	32	1.98
42068858--42068931	27	2.8	27	85	6	89	17	24	21	36	1.95
42069049--42069150	6	16.8	6	74	17	86	23	15	12	48	1.80
42074504--42074688	40	4.7	40	86	6	209	24	22	27	25	2.00
42074556--42074711	80	2.0	79	81	8	183	26	21	26	26	1.99
42082538--42082722	40	4.7	40	86	6	209	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328