genome.fa.s7.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  215  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64570660--64570767	40	2.7	38	85	8	128	21	29	25	23	1.99
64578734--64578882	80	1.9	80	81	2	183	22	30	24	22	1.99
64578775--64578882	40	2.7	38	85	8	128	21	29	25	23	1.99
64581949--64582178	40	5.8	40	90	3	356	23	21	27	26	1.99
64585992--64586027	13	2.8	14	84	16	51	27	25	0	47	1.52
64585979--64586019	18	2.2	19	87	12	59	29	24	0	46	1.53
64586142--64586276	39	3.4	38	73	8	101	28	28	20	23	1.99
64586515--64586602	18	4.6	18	68	19	61	47	12	1	38	1.49
64587873--64587924	5	10.0	5	83	8	68	55	1	0	42	1.10
64587874--64587924	26	2.0	26	88	7	77	54	1	0	43	1.11
64589710--64589740	1	31.0	1	93	0	53	3	0	0	96	0.21
64592443--64592478	13	2.8	14	84	16	51	27	25	0	47	1.52
64592430--64592470	18	2.2	19	87	12	59	29	24	0	46	1.53
64592593--64592727	39	3.4	38	73	8	101	28	28	20	23	1.99
64592966--64593004	18	2.1	19	90	4	62	48	10	0	41	1.37
64594322--64594378	5	11.0	5	78	14	62	56	1	0	42	1.10
64594321--64594376	12	4.5	12	81	16	69	55	1	0	42	1.10
64594321--64594383	12	5.0	12	74	16	56	53	1	0	44	1.10
64596532--64596567	2	18.0	2	100	0	72	50	0	0	50	1.00
64600171--64600349	27	6.6	27	85	5	229	32	10	17	39	1.84
64600171--64600349	81	2.2	81	87	2	261	32	10	17	39	1.84
64600171--64600349	54	3.3	54	86	6	256	32	10	17	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64600647--64600728	28	2.9	27	69	7	65	23	29	17	30	1.97
64603961--64604106	37	3.9	37	96	0	247	26	30	19	23	1.98
64604253--64604636	48	8.0	48	94	1	662	30	27	6	35	1.83
64608996--64609309	46	6.6	48	76	13	226	23	31	18	26	1.97
64612577--64612750	49	3.6	49	73	11	142	27	18	29	24	1.98
64612760--64612958	109	1.8	109	92	2	337	30	12	22	35	1.90
64624608--64624662	29	1.9	29	92	3	94	29	27	21	21	1.99
64628643--64628694	25	2.1	25	96	0	95	36	25	13	25	1.92
64629945--64630168	50	4.5	49	80	8	213	24	18	26	30	1.98
64629941--64630122	101	1.8	101	89	2	285	25	19	25	29	1.99
64633770--64633822	27	2.0	27	85	3	72	28	11	20	39	1.87
64635090--64635237	48	3.1	48	88	1	226	39	6	24	29	1.81
64643345--64643376	17	1.9	17	93	6	57	31	12	0	56	1.37
64645196--64645403	40	5.2	39	81	1	200	25	25	23	25	2.00
64645196--64645401	80	2.6	81	83	3	238	25	25	23	25	2.00
64647793--64647846	27	2.0	27	85	0	72	38	14	5	40	1.70
64651086--64651229	40	3.6	40	91	0	216	22	27	22	26	1.99
64651086--64651270	40	4.6	39	86	1	190	23	27	21	27	1.99
64651096--64651265	80	2.1	80	83	2	216	23	28	21	27	1.99
64653555--64653657	42	2.4	42	84	10	138	22	33	25	19	1.97
64655183--64655261	39	2.0	39	100	0	158	34	12	30	22	1.92
64656894--64656969	27	2.8	27	82	7	91	38	15	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64656956--64657271	54	5.9	54	79	3	260	41	20	7	30	1.80
64656956--64657249	27	10.9	26	83	4	223	41	20	7	30	1.80
64657516--64657633	41	2.9	41	77	3	114	23	21	27	27	1.99
64657775--64657838	22	2.9	22	77	9	67	20	23	23	32	1.98
64658041--64658094	22	2.5	22	81	0	72	14	24	22	38	1.91
64660337--64660397	27	2.3	27	82	0	86	36	19	18	26	1.94
64660382--64660453	26	2.7	27	82	4	101	37	22	9	30	1.86
64660409--64660695	81	3.5	80	73	8	224	40	18	8	32	1.81
64660382--64660697	27	11.7	27	75	5	181	40	18	8	31	1.82
64661492--64661516	13	1.9	13	100	0	50	52	0	0	48	1.00
64671353--64671404	27	1.9	27	92	0	86	32	15	21	30	1.94
64671341--64671416	27	2.8	27	78	7	82	34	15	19	30	1.93
64671545--64671623	27	2.9	27	81	3	79	20	25	20	34	1.96
64671812--64671912	33	3.0	32	87	9	132	29	20	23	25	1.99
64674049--64674141	43	2.2	43	86	7	127	31	25	15	27	1.95
64677316--64677425	27	4.1	27	88	7	147	34	22	23	19	1.96
64677316--64677425	55	2.1	51	86	10	150	34	22	23	19	1.96
64681488--64681605	39	3.0	39	87	1	164	27	19	30	22	1.98
64685069--64685137	26	2.5	28	86	4	97	27	14	26	31	1.95
64693129--64693197	26	2.5	28	86	4	97	27	14	26	31	1.95
64700832--64700988	39	4.0	39	95	0	269	26	20	31	21	1.98
64703293--64703331	20	2.0	20	94	0	69	38	7	20	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64703298--64703341	20	2.2	20	87	0	61	36	11	22	29	1.89
64703388--64703507	23	5.1	22	84	12	134	27	19	20	32	1.97
64703387--64703507	46	2.6	46	84	11	156	28	19	20	32	1.97
64703411--64703528	23	4.8	25	87	6	70	27	19	22	30	1.98
64703722--64703785	31	2.1	31	90	0	101	35	15	23	25	1.94
64711367--64711409	20	2.2	20	91	0	68	37	13	16	32	1.88
64711374--64711417	20	2.2	20	87	0	61	34	13	20	31	1.92
64711462--64711628	23	7.0	24	86	10	227	28	19	22	29	1.98
64711463--64711607	47	3.1	47	93	5	231	28	19	21	30	1.97
64718731--64718843	27	4.2	28	84	3	135	35	21	23	19	1.96
64723759--64723876	41	3.1	41	60	28	98	32	17	28	21	1.96
64723727--64723890	71	2.3	71	100	0	328	35	17	28	18	1.94
64731334--64731451	41	3.1	41	60	28	98	32	17	28	21	1.96
64731302--64731465	71	2.3	71	100	0	328	35	17	28	18	1.94
64733934--64733960	13	2.1	13	100	0	54	44	7	33	14	1.73
64735932--64735971	17	2.3	18	86	4	55	47	17	17	17	1.83
64736273--64736431	27	5.9	27	78	2	158	40	20	13	25	1.89
64737372--64737617	47	5.7	38	70	22	150	29	15	24	30	1.95
64737399--64737610	47	4.7	47	83	10	280	29	15	25	30	1.95
64737442--64737617	85	2.1	85	95	0	316	28	14	25	31	1.95
64739251--64739353	29	3.6	29	92	2	154	26	32	15	26	1.96
64747329--64747431	29	3.6	29	92	2	154	26	32	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64752037--64752089	27	2.0	27	85	3	72	28	11	20	39	1.87
64753907--64754159	45	5.6	45	89	1	382	24	20	27	28	1.99
64756443--64756484	15	2.8	15	88	0	66	16	16	14	52	1.75
64758734--64759016	38	6.7	38	67	23	138	29	14	25	31	1.94
64758761--64758984	47	4.9	48	76	18	217	30	14	22	31	1.94
64758814--64759016	85	2.4	85	93	1	345	29	13	24	32	1.93
64759374--64759411	12	3.2	12	85	7	51	42	0	31	26	1.56
64766077--64766179	29	3.6	29	86	2	136	28	26	16	29	1.97
64771052--64771172	43	2.8	42	78	12	129	28	25	18	27	1.98
64772333--64772357	13	1.9	13	100	0	50	52	0	0	48	1.00
64776039--64776160	39	3.1	39	96	1	217	26	33	18	21	1.96
64780249--64780411	39	4.2	39	95	0	281	25	33	19	20	1.97
64789656--64789737	27	3.0	27	82	3	94	19	23	21	35	1.96
64789923--64790023	33	3.0	33	88	4	141	27	18	25	27	1.98
64792162--64792253	43	2.1	43	82	7	107	30	25	16	28	1.96
64795529--64795638	27	4.1	27	88	5	138	34	21	23	20	1.97
64795529--64795642	55	2.2	52	84	10	144	35	21	22	19	1.96
64796835--64796889	25	2.3	22	76	14	56	63	0	34	1	1.05
64802644--64802774	30	4.5	30	86	8	171	28	25	13	32	1.94
64802643--64802774	58	2.3	58	85	4	176	28	26	13	31	1.94
64810598--64810728	30	4.5	30	86	8	171	28	25	13	32	1.94
64810597--64810728	58	2.3	58	85	4	176	28	26	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64813800--64813991	40	4.8	41	89	1	275	23	21	27	26	1.99
64817409--64817589	40	4.5	40	89	1	249	23	23	26	27	2.00
64821319--64821419	27	3.7	28	84	7	136	34	22	23	18	1.96
64821307--64821421	27	4.3	27	82	9	130	37	23	21	17	1.94
64821307--64821421	55	2.1	54	84	7	146	37	23	21	17	1.94
64827539--64827746	40	5.2	40	83	2	240	26	26	21	25	1.99
64833683--64833846	71	2.3	71	100	0	328	18	28	17	35	1.94
64841262--64841425	71	2.3	71	100	0	328	18	28	17	35	1.94
64841262--64841459	71	2.8	70	91	3	258	20	28	17	33	1.95
64842892--64842924	17	1.9	17	100	0	66	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328