genome.fa.s7.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  146  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42695935--42695965	2	15.5	2	100	0	62	51	0	0	48	1.00
42696539--42696721	41	4.5	41	83	4	212	33	25	15	24	1.95
42696539--42696721	81	2.3	81	84	3	226	33	25	15	24	1.95
42697517--42697545	13	2.1	14	93	6	51	37	20	0	41	1.53
42703165--42703197	2	16.5	2	100	0	66	51	0	0	48	1.00
42703773--42703955	41	4.5	41	83	4	212	33	25	15	24	1.95
42703773--42703955	81	2.3	81	84	3	226	33	25	15	24	1.95
42704747--42704775	13	2.1	14	93	6	51	37	20	0	41	1.53
42704863--42704927	34	1.9	34	100	0	130	27	20	12	40	1.88
42705308--42705343	7	5.3	7	93	3	56	86	0	2	11	0.68
42705371--42705415	15	2.7	18	74	22	53	42	37	0	20	1.52
42706492--42706541	22	2.2	23	85	3	66	48	2	4	46	1.32
42709449--42709481	17	1.9	17	88	11	50	60	6	3	30	1.36
42709589--42709669	28	3.1	25	72	20	67	70	1	2	25	1.07
42710117--42710200	44	1.9	44	90	4	134	26	10	15	47	1.78
42713870--42714119	41	6.1	41	80	2	261	34	26	19	19	1.95
42713878--42714119	123	2.0	123	86	1	342	35	26	19	19	1.95
42714056--42714172	57	2.1	55	87	6	164	34	29	19	16	1.94
42714097--42714135	16	2.4	16	95	0	69	33	30	23	12	1.92
42714108--42714258	38	3.9	38	84	0	167	34	29	19	16	1.94
42716348--42716556	96	2.2	96	84	3	260	33	14	23	28	1.94
42718039--42718190	68	2.3	66	85	4	205	42	14	15	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42718063--42718181	34	3.5	33	71	18	102	41	15	15	26	1.88
42720236--42720340	55	1.9	54	92	5	176	36	12	20	31	1.89
42723012--42723094	42	2.0	42	100	0	166	30	4	9	55	1.53
42723622--42723674	26	2.0	26	100	0	106	37	15	0	47	1.45
42724742--42724812	35	2.0	35	100	0	142	43	14	8	33	1.75
42726310--42726336	13	2.1	13	100	0	54	48	22	0	29	1.51
42730796--42730838	23	1.9	22	85	4	59	20	2	25	51	1.60
42735389--42735542	45	3.4	45	92	0	254	20	14	29	35	1.92
42735389--42735609	90	2.5	87	83	5	250	20	15	29	33	1.94
42737409--42737509	28	3.5	28	86	6	114	28	13	27	29	1.95
42737438--42737509	29	2.5	28	91	6	110	29	13	27	29	1.95
42756586--42756623	19	2.0	19	85	10	51	15	5	13	65	1.43
42762800--42762901	29	3.5	28	76	7	89	27	34	17	20	1.95
42766504--42766671	40	4.2	40	81	4	178	23	27	23	24	2.00
42774484--42774651	40	4.2	40	81	4	178	23	27	23	24	2.00
42778417--42778563	40	3.7	41	81	7	149	23	27	24	25	2.00
42782317--42782484	40	4.2	40	81	4	178	23	27	23	24	2.00
42795341--42795426	35	2.4	36	82	9	95	13	30	19	36	1.91
42797193--42797303	27	4.2	26	86	5	141	37	23	24	14	1.92
42798735--42798835	24	4.2	24	90	0	157	19	40	3	35	1.71
42798735--42798835	48	2.1	48	94	0	175	19	40	3	35	1.71
42805116--42805221	27	4.0	27	82	3	99	39	19	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42806652--42806744	24	3.9	24	89	0	141	23	39	3	33	1.71
42818005--42818067	23	2.5	25	85	15	94	39	7	15	36	1.77
42818017--42818064	23	2.1	23	100	0	96	45	8	10	35	1.68
42818487--42818648	43	3.8	43	77	9	141	31	24	17	27	1.97
42826074--42826178	43	2.5	43	83	7	126	30	25	18	25	1.98
42829583--42829651	30	2.3	30	97	0	129	20	26	33	20	1.97
42832086--42832202	40	2.9	40	85	0	153	17	29	15	37	1.91
42832139--42832202	20	3.2	20	70	0	56	14	34	15	35	1.88
42835047--42835188	40	3.6	40	83	2	153	25	29	9	35	1.87
42843859--42843917	30	2.0	30	83	6	75	40	3	25	30	1.72
42845204--42845305	27	3.8	26	83	10	107	37	18	21	22	1.94
42845812--42845885	27	2.7	27	85	0	85	31	18	17	32	1.95
42848373--42848416	22	2.0	22	83	12	56	56	6	6	29	1.51
42848531--42848605	14	4.9	15	70	23	59	57	2	8	32	1.42
42848587--42848793	18	10.5	19	64	24	67	58	0	6	34	1.27
42848739--42848828	10	8.7	10	72	17	60	61	1	1	36	1.11
42848739--42848828	17	5.4	16	72	18	69	61	1	1	36	1.11
42848575--42848774	89	2.2	89	80	10	210	59	0	7	34	1.25
42848660--42848828	26	6.8	25	70	22	90	59	0	4	34	1.23
42850450--42851005	206	2.7	206	87	3	805	28	22	17	31	1.97
42851873--42851977	49	2.1	49	82	8	124	0	17	1	80	0.87
42851873--42851977	7	14.9	7	72	16	83	0	17	1	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42851918--42851983	13	5.3	12	75	24	57	3	9	4	83	0.89
42861927--42862101	48	3.6	49	78	8	171	22	26	20	29	1.99
42862030--42862198	46	3.6	46	78	3	178	22	28	19	28	1.98
42869734--42869862	46	2.8	46	81	5	145	20	31	20	27	1.98
42874568--42874703	64	2.1	66	83	5	170	44	13	3	37	1.62
42883358--42883509	40	3.8	40	79	6	130	25	29	22	23	1.99
42889879--42890052	46	3.8	46	79	13	212	28	29	20	21	1.98
42889887--42890056	93	1.8	92	93	1	295	27	30	21	21	1.98
42891751--42891802	23	2.3	22	80	9	59	23	0	7	69	1.14
42891815--42891925	53	2.1	53	100	0	222	43	0	12	44	1.42
42892431--42892477	23	2.0	23	95	0	85	44	19	10	25	1.82
42893162--42893223	29	2.1	30	81	6	72	43	3	6	46	1.45
42894960--42895036	38	2.0	38	100	0	154	37	20	10	31	1.87
42901761--42901787	2	13.5	2	100	0	54	51	0	0	48	1.00
42901882--42901914	3	11.0	3	100	0	66	66	0	0	33	0.92
42903732--42903757	3	8.7	3	100	0	52	34	34	30	0	1.58
42905427--42905465	8	4.9	8	93	6	62	53	0	0	46	1.00
42918787--42918849	30	2.1	30	91	5	101	25	4	11	58	1.51
42919556--42919624	30	2.3	30	94	0	120	14	34	24	26	1.94
42925062--42925211	42	3.6	42	83	7	205	26	25	16	31	1.97
42928462--42928577	44	2.7	44	80	11	132	27	24	18	29	1.98
42929974--42930115	68	2.1	68	84	2	178	42	17	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42932467--42932568	29	3.5	29	72	10	109	28	31	17	22	1.97
42932433--42932600	58	2.9	58	92	0	275	27	28	19	23	1.98
42932769--42932885	43	2.7	43	93	0	189	34	34	21	10	1.87
42934883--42935039	68	2.3	68	84	3	201	41	18	14	25	1.89
42939395--42939619	119	1.9	120	81	6	278	27	27	21	24	1.99
42939376--42939619	40	6.1	40	84	6	264	26	27	21	24	1.99
42943053--42943098	23	1.9	23	86	8	65	28	2	2	67	1.14
42944860--42945353	140	3.5	139	89	1	711	26	19	22	31	1.98
42946362--42946390	13	2.2	13	100	0	58	20	13	13	51	1.75
42947617--42948197	74	8.2	71	77	11	503	23	23	15	36	1.94
42947617--42948197	36	16.3	36	80	9	536	23	23	15	36	1.94
42947823--42948189	102	3.5	101	76	13	244	25	21	15	37	1.93
42947617--42948191	139	4.0	146	76	11	446	23	23	16	36	1.94
42952427--42952464	10	3.8	10	83	13	51	23	7	2	65	1.32
42958159--42958285	39	3.4	39	79	7	147	29	22	12	35	1.91
42958159--42958283	38	3.3	38	78	8	148	29	22	12	36	1.90
42959027--42959064	20	1.9	20	84	10	51	44	13	21	21	1.85
42960900--42961173	46	6.0	46	93	0	433	39	14	23	22	1.91
42963068--42963105	18	2.1	18	100	0	76	42	0	5	52	1.24
42963068--42963114	18	2.6	18	90	6	60	44	0	6	48	1.28
42966221--42966362	71	2.0	71	97	0	266	26	18	4	50	1.67
42968870--42968901	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42969682--42969729	2	24.5	2	91	4	80	50	0	0	50	1.00
42969729--42969772	2	22.0	2	100	0	88	0	0	50	50	1.00
42970338--42970475	21	6.5	21	91	1	204	14	24	26	34	1.94
42970637--42970677	19	2.2	19	87	12	59	46	0	24	29	1.53
42974662--42974691	14	2.1	14	93	0	51	36	13	20	30	1.90
42977484--42977524	8	5.2	8	94	5	75	87	0	0	12	0.53
42977484--42977524	15	2.6	16	96	3	75	87	0	0	12	0.53
42977654--42977703	21	2.4	21	96	0	91	30	12	14	44	1.81
42983058--42983166	33	3.1	35	76	18	95	43	2	3	50	1.34
42992267--42992315	25	2.0	25	83	0	62	51	0	2	46	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328