genome.fa.s7.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  213  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63898514--63898583	27	2.6	27	93	2	113	30	25	14	30	1.95
63899061--63899092	2	16.0	2	93	0	55	46	0	0	53	1.00
63900476--63900786	39	8.0	39	91	0	478	22	24	28	24	1.99
63903037--63903083	20	2.3	20	92	0	76	19	31	29	19	1.96
63908738--63908808	13	5.5	13	87	0	106	38	29	8	23	1.85
63908945--63909085	51	2.8	49	83	2	165	29	15	21	32	1.95
63927287--63927413	49	2.6	49	93	0	209	29	10	33	27	1.90
63927379--63927448	35	2.0	35	100	0	140	22	11	34	31	1.90
63927414--63927571	49	3.2	49	99	0	307	27	7	33	31	1.85
63927330--63927494	84	2.0	84	97	0	312	26	9	33	30	1.89
63927287--63927618	133	2.5	129	87	6	465	28	8	33	30	1.87
63927539--63927604	33	2.0	33	100	0	132	30	0	33	36	1.58
63927720--63927804	37	2.3	37	95	0	152	24	20	34	21	1.97
63929616--63929700	40	2.1	40	84	0	107	27	21	28	23	1.99
63929898--63930058	29	5.7	29	93	4	274	26	15	32	25	1.95
63930541--63930639	41	2.4	41	80	11	114	26	24	24	25	2.00
63933359--63933646	49	6.1	49	89	8	427	28	8	32	29	1.86
63933451--63933530	39	2.1	39	97	0	151	26	10	32	31	1.89
63933359--63933696	137	2.5	133	88	4	484	28	8	32	29	1.87
63933359--63933646	88	3.1	95	86	11	396	28	8	32	29	1.86
63933623--63933682	18	3.3	18	69	17	61	30	3	31	35	1.74
63933612--63933682	36	2.0	36	100	0	142	28	4	33	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63933798--63933882	37	2.3	37	93	0	143	25	20	32	21	1.97
63935569--63935669	28	3.5	28	86	6	114	29	13	26	29	1.94
63939037--63939137	28	3.5	28	86	6	114	29	13	26	29	1.94
63946970--63947070	28	3.5	28	86	6	114	29	13	26	29	1.94
63954571--63954671	28	3.5	28	86	6	114	29	13	26	29	1.94
63957234--63957321	42	2.1	42	84	0	113	28	22	28	20	1.99
63957637--63957712	38	2.0	38	100	0	152	44	18	18	18	1.87
63962021--63962113	37	2.5	37	96	0	168	23	30	20	25	1.99
63962257--63962923	48	13.9	48	95	0	1136	29	28	6	35	1.83
63966535--63966742	40	5.2	40	84	0	236	25	22	26	25	2.00
63977842--63977899	27	2.1	27	80	0	62	20	18	18	41	1.91
63977917--63978049	27	4.9	27	93	0	203	40	15	12	32	1.83
63979589--63979709	28	4.3	28	83	1	134	28	14	31	24	1.95
63982559--63982615	23	2.4	24	82	8	73	35	12	21	31	1.90
63986768--63986868	28	3.5	29	87	6	134	29	25	13	30	1.94
63994595--63994695	28	3.5	29	86	6	125	29	26	13	29	1.94
64002942--64003040	29	3.4	29	80	9	96	40	11	24	24	1.87
64008087--64011942	690	5.5	691	81	7	3776	29	10	19	39	1.86
64012027--64014532	708	3.5	711	82	5	2913	28	10	20	40	1.86
64015267--64015407	34	4.1	34	85	0	192	27	22	20	29	1.99
64019917--64019953	19	1.9	19	88	0	56	0	16	2	81	0.81
64021141--64021253	40	2.8	41	85	5	140	35	30	14	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64021506--64021545	19	2.1	19	100	0	80	22	30	5	42	1.75
64021509--64021558	19	2.6	19	87	9	66	24	30	4	42	1.73
64023089--64023130	19	2.2	19	91	0	66	40	23	7	28	1.81
64028606--64028659	27	2.0	27	96	0	99	40	16	18	24	1.90
64032699--64032749	15	3.3	15	75	20	59	41	13	7	37	1.74
64032695--64032760	32	2.1	32	97	0	123	43	12	7	36	1.70
64033229--64033369	27	5.2	27	84	11	191	34	24	24	17	1.95
64033229--64033369	54	2.6	54	94	2	248	34	24	24	17	1.95
64034991--64035072	26	3.2	26	92	0	137	36	23	7	32	1.82
64036834--64036866	13	2.6	13	90	4	50	51	15	3	30	1.58
64043396--64043512	38	3.0	39	87	3	173	44	12	10	32	1.76
64049256--64049319	31	2.1	31	90	0	101	23	21	15	39	1.92
64049531--64049654	23	5.2	24	95	2	207	27	21	20	29	1.98
64049531--64049654	47	2.6	48	93	3	207	27	21	20	29	1.98
64049712--64049768	9	5.9	9	73	15	51	35	21	8	35	1.84
64049704--64049770	20	3.3	20	95	0	125	32	19	11	35	1.88
64049704--64049759	11	5.5	11	71	16	57	32	19	12	35	1.89
64051402--64051466	29	2.2	29	97	0	121	29	16	27	26	1.97
64059200--64059264	29	2.2	29	97	0	121	29	16	27	26	1.97
64062820--64062901	27	3.0	27	76	15	78	29	23	17	30	1.97
64062832--64062901	27	2.6	27	90	2	104	28	25	15	30	1.96
64067455--64067493	17	2.3	17	86	8	53	53	12	0	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64069529--64069576	24	2.0	24	100	0	96	37	20	8	33	1.83
64069533--64069587	24	2.3	24	87	3	67	36	21	7	34	1.81
64069764--64069916	56	2.7	56	90	2	236	31	23	16	28	1.96
64072463--64072625	39	4.2	39	94	0	272	21	19	34	25	1.96
64076256--64076473	79	2.7	77	77	12	201	26	25	21	27	1.99
64076270--64076473	40	5.1	40	78	8	202	26	25	21	26	2.00
64084458--64084640	77	2.3	82	82	10	229	26	26	21	24	2.00
64084458--64084640	40	4.7	40	82	9	225	26	26	21	24	2.00
64085351--64085378	2	14.0	2	100	0	56	50	0	0	50	1.00
64091571--64091711	29	5.0	29	68	10	87	28	16	29	25	1.97
64091620--64091717	29	3.4	29	75	8	94	27	18	28	25	1.98
64098719--64098754	19	1.9	19	88	5	56	63	0	22	13	1.29
64113260--64113305	20	2.3	20	85	7	58	19	21	39	19	1.93
64113271--64113314	20	2.3	20	92	7	74	13	20	40	25	1.89
64113545--64113635	27	3.4	27	92	0	146	37	18	19	24	1.94
64115484--64115705	40	5.6	40	90	1	322	22	26	22	27	2.00
64119303--64119483	50	3.7	48	75	9	172	25	29	17	27	1.97
64119310--64119490	96	1.8	97	83	9	242	27	29	16	26	1.97
64119310--64119529	96	2.3	93	81	12	227	26	29	17	26	1.98
64119406--64119527	50	2.6	44	83	12	131	26	29	16	27	1.97
64124764--64124857	27	3.5	25	83	12	116	35	17	21	26	1.95
64124763--64124867	54	1.9	54	86	3	149	34	18	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64129456--64129518	24	2.6	24	100	0	126	34	26	17	20	1.95
64131783--64131812	2	15.0	2	100	0	60	50	0	0	50	1.00
64132487--64132590	29	3.6	28	81	5	127	30	16	25	27	1.96
64140481--64140543	24	2.6	24	100	0	126	34	26	17	20	1.95
64148254--64148316	24	2.6	24	100	0	126	34	26	17	20	1.95
64151079--64151148	27	2.5	28	88	2	106	31	25	14	28	1.95
64153825--64154011	40	4.7	40	80	0	185	28	22	23	25	2.00
64159062--64159262	78	2.6	79	86	7	293	26	20	26	26	1.99
64159062--64159283	40	5.7	40	87	6	271	26	20	26	26	1.99
64166372--64166397	2	13.0	2	100	0	52	50	0	0	50	1.00
64167105--64167330	40	5.7	40	87	5	273	25	21	26	26	1.99
64167105--64167330	80	2.8	80	84	7	307	25	21	26	26	1.99
64170506--64170891	48	8.0	48	93	0	637	36	6	26	30	1.81
64170936--64171043	37	2.9	37	91	0	171	24	18	30	26	1.98
64176618--64176675	29	2.0	28	90	3	89	24	27	15	32	1.95
64178378--64178490	39	2.9	39	86	0	145	23	23	24	28	2.00
64193667--64193704	16	2.4	16	82	4	51	47	23	21	7	1.77
64194132--64194231	28	3.6	28	83	6	123	18	25	23	34	1.96
64194132--64194244	27	4.2	26	85	8	136	16	23	23	37	1.94
64194132--64194244	55	2.1	54	86	5	156	16	23	23	37	1.94
64197600--64197889	50	5.8	50	79	3	260	31	26	17	24	1.97
64197604--64197890	151	1.9	149	87	3	414	31	26	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64201420--64201489	27	2.6	27	88	6	97	30	25	12	31	1.93
64208792--64208852	29	2.1	29	96	0	113	31	16	26	26	1.96
64208953--64208983	2	15.5	2	100	0	62	48	0	0	51	1.00
64216041--64216103	24	2.6	24	100	0	126	34	26	17	20	1.95
64221825--64221954	40	3.2	40	82	4	165	23	24	28	23	2.00
64221788--64221954	80	2.1	79	81	7	196	25	23	27	23	2.00
64229867--64229996	40	3.2	40	84	4	174	22	24	29	23	1.99
64251494--64251620	29	4.3	29	85	4	166	30	29	14	25	1.95
64251494--64251620	60	2.2	57	84	4	164	30	29	14	25	1.95
64251810--64251864	8	7.0	8	81	2	58	7	21	23	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328