genome.fa.s7.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  186  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55364415--55364489	29	2.6	29	89	4	107	26	16	32	25	1.96
55367348--55367482	50	2.7	50	84	0	171	31	27	15	25	1.96
55372523--55372566	22	2.0	22	95	0	79	43	22	2	31	1.66
55374845--55374882	18	2.1	18	90	0	58	47	39	2	10	1.52
55377520--55377566	10	4.6	10	76	12	51	27	0	2	70	0.99
55377503--55377571	20	3.5	19	81	11	77	33	1	1	63	1.12
55377519--55377568	11	4.7	11	76	16	52	28	0	2	70	0.99
55377539--55377584	20	2.3	20	85	7	58	41	0	0	58	0.98
55377580--55377645	20	3.3	20	87	8	100	39	0	6	54	1.25
55379506--55379603	50	2.0	50	85	2	135	45	12	10	31	1.75
55382158--55382227	27	2.6	27	95	2	122	30	27	14	28	1.95
55389343--55389412	27	2.6	27	95	2	122	30	27	14	28	1.95
55390701--55390824	49	2.5	49	89	0	185	25	28	14	31	1.95
55393231--55393413	39	4.6	39	87	0	240	22	30	22	24	1.99
55398250--55398470	39	5.6	39	89	1	309	23	30	22	24	1.99
55411180--55411346	40	4.2	40	81	2	176	24	27	22	25	2.00
55411196--55411346	80	1.9	79	83	6	198	23	27	22	25	2.00
55412231--55412339	56	2.0	53	82	12	132	28	16	18	36	1.92
55416575--55416627	21	2.5	21	93	3	88	22	13	26	37	1.91
55418638--55418863	39	5.8	40	86	4	207	22	33	22	22	1.98
55418674--55418871	39	5.2	39	88	5	278	22	33	21	22	1.97
55418712--55418854	74	1.9	74	94	0	250	17	34	23	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55424931--55424993	31	2.1	31	90	3	101	23	23	15	36	1.94
55425185--55425303	24	5.0	24	89	5	170	26	22	21	28	1.99
55425185--55425303	47	2.5	48	89	5	170	26	22	21	28	1.99
55425353--55425413	20	3.0	20	92	0	104	32	21	11	34	1.89
55425456--55425503	25	1.9	25	86	0	69	25	16	25	33	1.96
55431999--55432061	31	2.1	31	90	3	101	23	23	15	36	1.94
55432252--55432394	24	6.0	24	91	4	209	26	22	22	28	1.99
55432252--55432393	47	3.0	48	90	5	207	26	22	22	28	1.99
55432251--55432394	71	2.0	72	89	4	220	26	22	22	29	1.99
55432443--55432503	20	3.0	20	92	0	104	32	21	11	34	1.89
55432546--55432593	25	1.9	25	86	0	69	25	16	25	33	1.96
55434547--55434672	46	2.7	46	93	2	209	20	20	27	30	1.98
55438509--55438636	29	4.4	29	98	2	249	27	28	14	30	1.95
55438509--55438636	57	2.2	58	97	2	249	27	28	14	30	1.95
55446415--55446604	29	6.6	29	89	1	100	26	30	15	27	1.96
55446474--55446604	58	2.3	58	97	0	253	27	28	13	30	1.94
55446445--55446604	87	1.8	87	89	2	250	26	30	14	28	1.95
55448781--55448836	15	3.7	15	83	7	78	14	16	8	60	1.57
55454479--55454580	49	2.1	49	96	0	186	23	22	9	44	1.83
55454632--55454724	48	1.9	48	93	0	159	31	31	16	21	1.95
55457310--55457344	18	1.9	18	94	0	61	34	14	11	40	1.82
55469143--55469203	24	2.5	24	86	5	79	34	27	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55472475--55472643	40	4.2	40	80	4	173	23	26	21	28	1.99
55481589--55481771	40	4.6	39	75	6	136	26	24	27	22	2.00
55481628--55481816	80	2.4	81	77	4	186	23	24	29	22	1.99
55487399--55487608	40	5.2	40	88	2	305	21	28	24	25	1.99
55489371--55489630	27	9.7	27	87	0	333	32	20	22	24	1.98
55490057--55490121	22	3.0	21	73	13	60	21	24	21	32	1.98
55490279--55490380	27	3.8	27	83	5	107	19	22	20	37	1.95
55490271--55490380	54	2.1	52	81	3	121	19	22	20	38	1.94
55490487--55490643	6	25.3	6	71	18	108	21	17	13	47	1.81
55490487--55490629	31	4.6	31	81	11	148	20	18	13	47	1.82
55490516--55490597	37	2.2	37	88	0	119	19	19	13	47	1.82
55490556--55490623	25	2.7	25	95	0	127	20	22	11	45	1.83
55491580--55491755	46	3.8	46	75	10	169	30	25	20	23	1.99
55491631--55491774	46	3.1	45	72	18	127	29	25	19	25	1.98
55494148--55494203	15	3.7	15	86	9	87	60	10	16	12	1.58
55496103--55496288	40	4.6	39	84	6	196	26	22	26	25	2.00
55496103--55496321	80	2.8	80	77	11	218	27	21	26	24	2.00
55500083--55500219	43	3.2	42	77	8	125	29	25	18	26	1.98
55500302--55500377	38	2.0	38	100	0	152	28	26	21	23	1.99
55507582--55507614	16	2.0	17	88	5	50	57	9	3	30	1.45
55536561--55536599	15	2.6	15	91	0	60	33	0	5	61	1.18
55542867--55543074	40	5.2	40	93	0	317	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55545692--55545864	67	2.5	71	84	7	246	31	21	26	20	1.98
55545725--55545898	67	2.6	67	93	0	294	29	22	28	18	1.98
55554061--55554237	40	4.4	40	80	4	189	28	26	20	24	1.99
55554069--55554223	80	1.9	79	85	3	213	29	27	19	24	1.98
55556272--55556301	2	15.0	2	100	0	60	50	0	0	50	1.00
55561427--55561634	40	5.2	39	84	1	209	25	25	22	26	2.00
55561427--55561632	80	2.6	81	84	3	247	24	26	22	26	2.00
55569411--55569618	40	5.2	39	84	1	209	25	25	22	26	2.00
55569411--55569616	80	2.6	81	84	3	247	24	26	22	26	2.00
55573263--55573294	16	1.9	17	93	6	57	43	0	0	56	0.99
55576161--55576321	29	5.6	29	87	0	178	27	15	32	24	1.95
55584625--55584796	93	1.8	93	94	0	308	27	29	22	20	1.99
55584618--55584793	46	3.8	46	79	12	207	28	28	21	20	1.98
55592181--55592352	93	1.8	93	96	0	317	27	29	21	20	1.98
55592174--55592349	46	3.8	46	79	12	216	28	29	21	20	1.98
55594500--55594593	29	3.2	29	87	0	125	32	15	26	24	1.96
55594503--55594630	58	2.2	58	80	2	132	29	16	29	24	1.96
55594532--55594606	29	2.6	29	82	0	78	32	17	28	22	1.96
55597534--55597664	40	3.3	39	77	7	140	25	21	27	25	1.99
55605606--55605776	40	4.3	40	85	3	222	25	21	28	25	1.99
55613796--55613912	40	2.9	40	97	0	216	23	22	29	24	1.99
55613796--55613967	80	2.2	80	84	3	213	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55619585--55619716	40	3.3	39	78	5	140	25	21	27	25	1.99
55623198--55623299	29	3.5	29	90	0	150	27	15	33	23	1.95
55628462--55628508	20	2.3	20	85	7	60	10	29	38	21	1.87
55630270--55630303	12	2.9	12	91	4	52	0	23	0	76	0.79
55630399--55630430	16	1.9	17	93	6	57	43	0	0	56	0.99
55631298--55631361	31	2.1	31	93	0	110	23	21	17	37	1.94
55631552--55631670	24	5.0	24	88	5	161	27	22	21	28	1.99
55631552--55631670	47	2.5	48	87	5	161	27	22	21	28	1.99
55631722--55631781	20	3.0	20	95	0	111	33	20	10	36	1.86
55631722--55631776	11	5.4	11	70	16	55	30	20	10	38	1.87
55633029--55633106	27	2.9	26	78	14	86	21	20	21	35	1.96
55633147--55633403	27	9.4	27	77	5	140	33	9	19	37	1.84
55633237--55633376	54	2.6	54	82	4	183	31	7	21	39	1.82
55633326--55633618	81	3.6	80	75	4	232	37	8	21	31	1.84
55633354--55633564	27	7.9	27	85	6	259	40	8	22	28	1.83
55633561--55633659	27	3.7	26	78	10	92	30	9	19	41	1.82
55633553--55633659	54	2.0	54	83	3	135	30	9	20	39	1.84
55640658--55641187	47	11.3	47	95	0	925	32	9	29	28	1.88
55643735--55644159	40	10.7	40	91	1	669	23	21	29	25	1.99
55644335--55644386	25	2.1	25	85	7	70	28	7	32	30	1.85
55646663--55646887	124	1.8	124	86	1	326	30	10	23	35	1.89
55646882--55647011	40	3.2	40	82	4	165	23	24	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55646844--55647011	80	2.1	80	81	6	198	25	23	27	23	2.00
55653880--55654104	124	1.8	124	83	1	299	30	11	23	34	1.90
55657437--55657917	47	10.2	47	95	0	827	32	10	29	28	1.90
55660459--55660491	10	3.7	9	88	11	50	78	0	3	18	0.87
55662562--55662764	42	4.8	42	84	1	262	27	16	25	30	1.96
55675150--55675181	17	1.9	16	93	6	55	18	3	3	75	1.08
55677969--55678040	26	2.7	27	82	4	76	26	23	19	30	1.98
55682579--55682605	13	2.1	13	100	0	54	37	0	14	48	1.45
55683056--55683112	21	2.8	21	94	2	98	14	29	24	31	1.94
55690437--55690492	21	2.7	21	85	0	67	17	26	21	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328