genome.fa.s7.2.7.7.80.10.50.1000.232.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  232  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69666505--69666574	25	2.8	25	93	0	113	27	25	22	24	2.00
69666504--69666599	25	3.9	24	81	9	95	28	23	22	25	2.00
69666505--69666599	50	1.9	50	80	8	113	28	24	23	24	2.00
69666795--69666868	30	2.4	30	90	2	112	31	20	24	24	1.98
69668832--69669039	79	2.6	80	78	6	190	24	30	23	22	1.99
69668932--69669039	40	2.7	40	86	0	135	21	30	25	23	1.99
69672495--69672632	27	5.1	27	89	0	204	29	21	6	42	1.78
69672465--69672658	54	3.6	54	79	4	160	32	22	5	39	1.77
69672600--69672741	27	5.3	27	78	5	117	38	22	7	32	1.81
69672627--69672763	27	5.2	27	80	6	129	40	21	7	30	1.81
69672609--69672766	54	3.0	54	78	6	153	38	21	7	32	1.82
69672748--69672969	80	2.8	81	88	0	338	35	18	22	23	1.96
69672751--69672969	27	8.1	27	90	1	314	34	19	22	24	1.97
69673197--69673247	25	2.1	25	85	3	68	35	21	15	27	1.94
69673408--69673491	31	2.7	31	92	1	134	29	20	23	26	1.99
69679548--69679608	30	2.1	29	90	3	95	36	22	16	24	1.94
69684707--69684732	13	2.0	13	100	0	52	30	7	15	46	1.74
69684951--69685031	38	2.1	38	97	0	153	40	0	23	35	1.55
69685427--69685598	42	4.1	42	79	5	143	16	22	16	43	1.87
69689121--69689439	138	2.3	138	85	1	426	29	15	26	28	1.96
69691348--69691507	39	4.1	39	96	0	284	21	25	30	22	1.99
69693189--69693238	25	2.0	25	100	0	100	28	12	24	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69697615--69697813	39	5.1	39	96	0	353	21	24	30	23	1.99
69701275--69701322	23	2.0	25	84	8	64	47	6	14	31	1.69
69706028--69706065	20	1.9	20	88	0	58	50	0	7	42	1.31
69708750--69708870	55	2.3	54	92	4	201	30	1	2	65	1.15
69710365--69710406	18	2.4	18	92	4	68	23	28	9	38	1.86
69713824--69713983	39	4.1	39	96	0	284	21	31	26	20	1.98
69720812--69720918	39	2.7	39	83	11	121	21	29	25	23	1.99
69724097--69724241	37	3.9	37	92	0	236	24	32	18	24	1.97
69724286--69724476	48	4.0	48	91	0	319	30	26	6	35	1.83
69725941--69726043	29	3.6	28	80	5	116	29	33	16	21	1.95
69727680--69728217	48	11.2	48	93	0	833	31	27	5	34	1.81
69727680--69728207	96	5.5	96	94	0	939	31	27	6	34	1.81
69735487--69735741	126	2.0	127	86	2	361	29	17	16	37	1.91
69735760--69735824	30	2.1	30	82	2	76	49	10	1	38	1.47
69735800--69735923	34	3.7	33	81	6	142	41	16	1	39	1.58
69735967--69736042	34	2.2	34	81	9	91	48	23	1	26	1.59
69738627--69738696	27	2.5	28	88	4	97	34	24	24	17	1.96
69738627--69738715	27	3.2	27	79	7	90	32	23	23	20	1.98
69739538--69739709	46	3.8	44	76	11	154	22	19	27	29	1.98
69739535--69739699	89	1.9	89	89	0	258	23	20	27	28	1.99
69741128--69741277	28	5.4	28	92	0	237	32	8	24	34	1.86
69743999--69744066	31	2.2	32	91	2	111	25	29	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69749775--69749887	29	3.9	29	95	0	190	27	30	14	27	1.95
69749756--69749886	58	2.3	57	90	1	199	25	32	15	25	1.95
69752550--69752613	31	2.1	31	90	0	101	23	25	15	35	1.94
69752807--69752923	23	5.0	23	90	6	173	29	22	22	26	1.99
69752974--69753040	20	3.3	20	93	0	116	32	20	11	34	1.90
69752974--69753029	11	5.5	11	71	16	57	32	19	12	35	1.89
69753077--69753123	24	2.0	24	82	0	58	25	14	25	34	1.94
69760139--69760206	32	2.1	32	94	0	118	26	26	20	26	1.99
69762288--69762373	31	2.8	31	80	5	113	24	29	17	29	1.97
69762593--69762662	25	2.8	25	91	0	104	25	22	24	27	2.00
69762793--69762840	25	1.9	25	86	0	69	29	16	22	31	1.96
69768438--69768609	40	4.3	40	88	5	233	28	26	20	24	1.99
69768438--69768609	80	2.2	80	89	1	265	28	26	20	24	1.99
69778485--69778648	40	4.2	40	80	4	165	26	22	26	24	2.00
69781554--69781654	28	3.5	28	86	6	114	29	26	13	29	1.94
69795545--69795616	28	2.5	29	95	2	128	26	15	30	27	1.96
69803418--69803491	29	2.6	29	95	0	139	27	14	31	27	1.95
69803475--69803550	29	2.6	29	78	0	89	22	19	35	22	1.96
69803418--69803550	58	2.3	58	80	2	133	24	17	33	24	1.96
69810659--69810954	143	2.1	141	98	1	565	21	10	29	38	1.87
69811597--69811728	29	4.6	29	88	0	165	29	15	31	24	1.95
69818615--69818912	143	2.1	143	99	0	587	21	10	29	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69819554--69819685	29	4.6	29	88	0	165	29	15	31	24	1.95
69822923--69823176	30	8.5	30	70	10	108	39	13	22	24	1.90
69822923--69823138	60	3.6	59	77	5	195	39	14	22	23	1.90
69822935--69823176	90	2.7	90	82	3	292	39	14	22	23	1.91
69828784--69828833	25	2.0	25	84	0	64	36	12	20	32	1.89
69830583--69830682	29	3.4	29	88	1	137	35	12	27	26	1.91
69833983--69834067	30	2.8	30	81	0	116	41	9	27	22	1.84
69840846--69840971	39	3.2	39	93	0	207	23	20	28	26	1.99
69840846--69840989	78	1.8	78	85	2	200	24	22	27	25	2.00
69840846--69841009	78	2.1	78	83	5	199	23	21	28	26	1.99
69845317--69845692	94	4.0	94	96	0	671	31	10	18	39	1.85
69845705--69845767	24	2.6	25	82	5	76	22	14	30	33	1.93
69848711--69848886	46	3.8	46	81	10	232	20	21	29	28	1.98
69848707--69848878	93	1.8	93	96	0	317	20	22	30	27	1.98
69850666--69850780	44	2.6	44	85	2	149	36	13	21	27	1.92
69850666--69850799	46	3.0	45	82	6	137	35	14	23	26	1.93
69858042--69858156	44	2.6	44	85	2	149	35	13	22	27	1.92
69858042--69858175	46	3.0	45	82	4	153	35	14	23	26	1.93
69861545--69861776	49	4.7	48	83	6	293	29	27	18	25	1.98
69861531--69861776	100	2.5	99	85	4	343	28	27	18	25	1.98
69862419--69862478	30	2.0	30	87	6	86	28	26	8	36	1.85
69864516--69864543	14	2.0	14	100	0	56	64	14	7	14	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69867098--69867278	46	3.9	46	80	9	224	20	21	30	27	1.98
69867100--69867271	93	1.8	93	96	0	317	20	22	30	27	1.98
69870071--69870184	48	2.3	49	84	4	149	30	28	16	24	1.97
69871491--69871662	46	3.8	46	77	13	194	29	29	20	20	1.98
69873718--69873777	30	2.0	30	83	6	77	28	26	6	38	1.81
69877182--69877209	7	4.0	7	100	0	56	28	28	0	42	1.56
69882035--69882131	30	3.2	30	73	2	88	28	13	27	29	1.94
69882667--69882710	13	3.4	14	84	12	58	0	36	0	63	0.95
69885011--69885183	93	1.9	93	92	2	294	27	29	21	21	1.98
69885004--69885179	46	3.8	46	79	14	191	28	28	21	21	1.98
69886849--69886915	34	2.0	33	82	8	82	32	20	23	22	1.98
69891451--69891675	80	2.8	80	82	8	273	24	21	27	26	2.00
69891453--69891675	119	1.9	120	84	8	303	25	21	27	26	1.99
69891452--69891675	40	5.6	39	84	7	208	25	21	27	25	2.00
69891452--69891675	79	2.8	79	80	9	208	25	21	27	25	2.00
69895762--69896038	51	5.5	49	71	13	181	28	20	22	28	1.98
69895814--69895989	51	3.5	50	77	4	201	28	22	21	27	1.99
69895757--69896046	101	2.9	101	88	2	388	28	21	22	28	1.99
69897687--69897917	99	2.3	97	85	4	302	27	27	19	25	1.99
69911314--69911344	16	2.0	15	93	6	53	48	0	19	32	1.49
69915202--69915271	25	2.8	25	93	0	113	27	22	24	25	2.00
69915394--69915441	25	1.9	25	82	0	60	27	12	22	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69917024--69917130	30	3.6	31	75	6	105	28	28	16	26	1.97
69921428--69921466	17	2.2	18	86	4	53	46	10	5	38	1.60
69923825--69923857	12	2.8	12	86	13	50	72	0	6	21	1.05
69925960--69926004	21	2.3	19	78	14	54	64	2	26	6	1.30
69929314--69929410	30	3.2	31	73	5	101	27	28	15	27	1.96
69931072--69931109	11	3.4	11	88	3	58	68	7	5	18	1.34
69931093--69931130	18	2.2	18	86	9	53	73	5	7	13	1.22
69932045--69932101	11	5.5	10	73	22	55	77	1	17	3	1.00
69932034--69932101	21	3.2	20	80	12	66	76	2	17	2	1.04
69932045--69932101	5	11.0	5	77	17	55	77	1	17	3	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328