genome.fa.s7.2.7.7.80.10.50.1000.327.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  327  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96945942--96946098	25	6.3	25	69	5	95	34	20	14	31	1.92
96947615--96947765	15	10.4	14	67	25	50	31	7	1	58	1.36
96947673--96947986	3	106.3	3	65	13	80	28	9	2	59	1.42
96947944--96947982	20	2.0	20	94	0	69	30	7	2	58	1.39
96948149--96948378	3	76.7	3	74	7	155	30	7	0	60	1.30
96953851--96953893	20	2.2	20	91	0	68	13	20	11	53	1.71
96955933--96955972	20	2.0	20	100	0	80	35	15	25	25	1.94
96985040--96985126	45	1.9	45	88	4	131	35	12	6	44	1.69
96989648--96989686	14	2.6	16	88	8	55	46	15	2	35	1.60
96992192--96992252	17	3.4	17	74	12	68	40	9	0	49	1.36
96992184--96992238	17	3.0	18	70	15	58	38	12	0	49	1.41
96993357--96993398	20	2.0	23	86	13	63	35	0	7	57	1.26
96993503--96993546	23	1.9	24	90	9	74	31	2	6	59	1.36
96994186--96994227	22	1.9	22	85	9	59	40	2	0	57	1.12
96994685--96994735	11	4.7	11	81	11	61	9	5	11	72	1.27
96994685--96994744	22	2.8	22	80	7	61	11	6	10	71	1.30
96994673--96994744	33	2.2	32	79	16	78	12	6	8	72	1.28
96994706--96994744	11	3.5	11	89	0	51	12	10	5	71	1.28
96997112--96997175	20	3.3	20	79	12	71	39	1	1	57	1.17
96997465--96997511	13	3.5	14	82	5	62	76	0	8	14	1.01
96997469--96997523	18	3.1	18	81	2	58	74	1	10	12	1.15
96998535--96998559	12	2.1	12	100	0	50	16	24	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96998537--96998643	45	2.4	45	92	3	171	20	19	19	40	1.92
96999705--96999768	27	2.4	27	84	7	78	53	9	1	35	1.43
97008508--97008533	2	13.0	2	100	0	52	50	0	0	50	1.00
97010180--97010223	23	1.9	23	81	9	54	40	22	6	29	1.80
97012583--97012629	6	7.8	6	95	0	67	38	51	10	0	1.37
97016413--97016442	2	15.0	2	100	0	60	50	0	0	50	1.00
97017581--97017630	13	3.4	14	73	26	50	48	0	0	52	1.00
97017583--97017631	14	3.3	14	81	13	53	46	0	0	53	1.00
97020720--97020754	2	18.5	2	88	11	56	48	0	0	51	1.00
97020717--97020764	12	3.9	12	82	12	53	43	0	2	54	1.12
97037061--97037088	5	5.6	5	100	0	56	39	0	0	60	0.97
97037384--97037410	3	9.0	3	100	0	54	33	0	66	0	0.92
97040215--97040247	15	2.1	16	88	5	50	30	0	0	69	0.88
97045034--97045142	53	2.1	53	96	0	200	23	13	20	42	1.88
97045134--97045195	28	2.1	28	88	5	88	1	14	0	83	0.71
97045134--97045195	14	4.3	15	82	9	67	1	14	0	83	0.71
97045133--97045194	27	2.3	27	88	0	88	3	14	0	82	0.80
97045142--97045192	25	2.1	24	85	3	66	1	13	0	84	0.71
97048696--97048744	25	2.0	25	84	8	64	44	4	0	51	1.20
97048956--97048996	20	2.2	18	86	8	55	29	2	9	58	1.43
97051623--97051674	25	2.1	25	100	0	104	21	11	23	44	1.84
97052233--97052266	17	2.0	17	88	0	50	32	14	8	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97057539--97057582	23	1.9	23	90	0	70	61	9	6	22	1.50
97058451--97058496	2	23.0	2	100	0	92	50	0	0	50	1.00
97061075--97061105	5	6.2	5	100	0	62	19	22	19	38	1.93
97063944--97063976	15	2.2	15	94	0	57	45	3	33	18	1.65
97067721--97067892	75	2.4	75	83	8	205	32	11	23	33	1.90
97067724--97067890	35	4.6	35	84	9	167	32	11	23	32	1.90
97067820--97067890	36	2.0	35	88	2	106	33	14	21	30	1.92
97070573--97070604	16	2.1	15	94	5	55	50	28	18	3	1.62
97070852--97070916	28	2.3	28	91	0	103	32	27	7	32	1.85
97071010--97071099	28	3.2	27	84	4	99	21	23	22	33	1.97
97071010--97071124	55	2.1	56	80	11	130	20	24	20	35	1.96
97072181--97072214	10	3.3	10	84	8	50	29	8	8	52	1.62
97079040--97079099	30	2.0	30	93	0	102	58	11	5	25	1.53
97081878--97081961	21	4.1	21	75	9	75	11	25	21	41	1.87
97081897--97081978	39	2.1	39	90	0	128	12	24	24	39	1.89
97084509--97084637	44	2.8	45	82	4	152	34	13	24	27	1.93
97090650--97090778	44	2.8	45	82	4	152	34	13	24	27	1.93
97092901--97092934	12	2.8	12	81	0	50	52	0	23	23	1.47
97095819--97095856	19	2.0	19	89	0	58	63	15	5	15	1.48
97108413--97108452	21	1.9	21	84	0	53	57	2	10	30	1.45
97114473--97114536	31	2.0	32	85	8	87	45	0	7	46	1.32
97114966--97115022	15	3.9	15	83	2	80	35	1	12	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97115377--97115465	23	4.0	23	83	4	101	14	20	24	40	1.90
97115611--97115649	19	2.0	21	85	10	55	53	0	20	25	1.45
97138144--97138176	1	33.0	1	100	0	66	100	0	0	0	0.00
97138442--97138476	2	17.5	2	100	0	70	48	0	0	51	1.00
97144897--97144929	2	16.5	2	100	0	66	51	0	0	48	1.00
97145286--97145331	24	1.9	24	81	0	56	32	4	13	50	1.61
97150414--97150452	19	2.1	19	100	0	78	46	12	10	30	1.75
97159936--97159981	18	2.6	18	96	0	83	13	13	0	73	1.09
97162848--97162892	2	22.5	2	100	0	90	48	0	0	51	1.00
97163464--97163495	15	2.1	15	94	0	55	62	3	6	28	1.34
97166945--97166999	16	3.4	16	76	20	60	60	3	0	36	1.15
97169694--97169819	61	2.1	61	100	0	252	46	28	4	20	1.71
97173241--97173374	65	2.1	65	98	0	259	43	8	22	25	1.82
97179910--97179960	25	2.0	25	100	0	102	43	27	9	19	1.82
97183540--97183567	13	2.2	13	100	0	56	50	7	7	35	1.57
97184269--97184299	9	3.3	9	95	4	53	41	0	0	58	0.98
97184294--97184344	20	2.5	20	93	0	84	35	13	1	49	1.54
97189857--97189964	44	2.4	44	87	3	144	29	23	13	33	1.93
97196991--97197098	44	2.4	44	85	3	135	30	23	13	32	1.93
97219247--97219276	12	2.4	12	94	5	51	0	10	0	90	0.47
97219247--97219283	13	2.8	13	91	4	56	2	10	0	86	0.67
97220901--97220961	20	3.2	19	80	11	72	39	8	8	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97220910--97220961	19	2.8	19	80	11	63	42	7	9	40	1.66
97221053--97221097	23	1.9	23	81	4	54	42	6	2	48	1.41
97224063--97224172	26	4.2	26	96	0	193	37	24	4	33	1.76
97226873--97226931	31	1.9	31	96	0	109	32	18	8	40	1.81
97227160--97227198	21	1.9	20	89	5	60	28	23	23	25	1.99
97231030--97231163	64	2.1	65	98	1	261	35	8	16	38	1.80
97234522--97234580	31	1.9	31	89	0	91	16	27	6	49	1.71
97236111--97236288	92	1.9	93	93	1	304	18	10	14	56	1.66
97236726--97236775	25	2.0	25	96	0	91	28	26	4	42	1.73
97237681--97237741	24	2.5	24	76	12	70	54	0	1	44	1.10
97237816--97237853	19	2.0	19	100	0	76	47	15	10	26	1.78
97241140--97241562	137	3.1	137	96	0	776	31	24	18	24	1.98
97243349--97243484	26	5.2	26	98	0	236	36	24	5	33	1.80
97244249--97244358	47	2.3	47	81	6	134	36	21	15	26	1.93
97245114--97245192	4	19.2	4	72	10	61	3	26	5	64	1.31
97245114--97245224	50	2.2	51	88	6	174	6	26	6	61	1.44
97245217--97245247	14	2.2	14	94	0	53	22	16	0	61	1.34
97249401--97249566	58	2.8	58	82	5	210	44	0	2	52	1.18
97249512--97249566	26	2.3	23	77	19	60	45	0	0	54	0.99
97266316--97266360	19	2.2	21	84	7	58	51	2	0	46	1.13
97269605--97269801	28	7.0	28	84	4	263	29	16	21	31	1.96
97269620--97269801	56	3.2	56	94	1	303	30	17	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97279741--97279767	2	13.5	2	100	0	54	48	0	0	51	1.00
97284630--97284709	32	2.5	32	76	15	85	41	5	10	43	1.60
97285699--97285798	52	1.9	52	91	0	164	24	26	26	24	2.00
97288408--97288454	7	6.6	7	83	9	51	51	36	0	12	1.40
97288408--97288454	21	2.2	21	85	11	60	51	36	0	12	1.40
97288406--97288453	8	6.5	8	81	13	59	52	33	0	14	1.42
97295488--97295527	6	6.7	6	82	0	53	5	32	15	47	1.66
97301564--97301613	19	2.6	19	84	12	66	56	6	12	26	1.58
97301916--97301956	17	2.4	17	100	0	82	9	29	41	19	1.83
97302614--97302651	20	1.9	20	84	10	51	44	10	5	39	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328