genome.fa.s7.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  206  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61926747--61926870	54	2.3	53	78	1	140	33	8	22	34	1.85
61928619--61928720	43	2.4	43	83	1	125	26	14	36	22	1.93
61928703--61928805	29	3.5	28	77	7	91	22	17	32	28	1.96
61932335--61932405	31	2.3	31	95	0	124	28	25	15	30	1.96
61932427--61932520	42	2.2	42	88	3	136	37	20	12	29	1.90
61932653--61932720	25	2.8	25	84	6	95	27	23	20	27	1.99
61932680--61932762	41	2.0	42	95	2	150	27	24	18	30	1.98
61932721--61932778	26	2.2	26	90	0	89	25	24	18	31	1.98
61932828--61932894	20	3.3	20	89	4	100	31	17	10	40	1.84
61935294--61935434	40	3.5	40	81	9	146	24	22	28	24	2.00
61935325--61935455	40	3.3	40	80	8	106	26	22	26	23	2.00
61946340--61946525	40	4.7	40	82	5	164	25	20	27	25	1.99
61948003--61948136	27	5.0	27	74	7	110	32	6	19	41	1.77
61947983--61948116	54	2.5	54	83	0	160	33	7	19	39	1.80
61948168--61948450	27	10.4	27	78	7	178	36	8	22	32	1.84
61948249--61948355	28	3.9	26	79	9	106	29	10	21	38	1.87
61948239--61948369	55	2.4	54	77	6	129	31	9	21	38	1.85
61948348--61948470	54	2.3	54	85	0	174	34	7	24	33	1.83
61950676--61950754	31	2.5	31	91	0	131	26	24	18	30	1.98
61950778--61950869	42	2.2	42	88	0	130	34	21	14	29	1.93
61951002--61951136	26	5.3	26	87	5	190	27	22	20	28	1.99
61951186--61951251	20	3.3	20	89	4	98	31	18	10	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61952062--61952187	54	2.3	54	84	0	153	30	8	19	41	1.81
61952085--61952240	81	1.9	81	83	5	199	27	9	21	41	1.84
61952062--61952207	27	5.4	26	76	9	114	28	8	21	41	1.81
61952062--61952207	54	2.7	54	81	4	152	28	8	21	41	1.81
61952228--61952314	27	3.3	26	79	10	70	41	8	19	31	1.80
61952307--61952440	55	2.4	54	80	6	153	32	8	20	38	1.84
61952354--61952438	28	3.0	28	87	5	127	31	8	22	37	1.84
61952219--61952467	137	1.8	135	84	1	336	35	8	21	34	1.84
61952245--61952521	27	10.2	27	79	6	157	35	8	23	32	1.84
61957685--61957740	14	4.0	14	88	0	85	21	32	5	41	1.76
61957676--61957739	28	2.3	28	91	0	101	25	32	3	39	1.71
61957976--61958018	19	2.4	17	80	7	50	83	2	9	4	0.87
61963135--61963317	39	4.6	39	88	0	240	23	22	31	22	1.99
61966381--61966504	40	3.1	40	87	4	171	25	28	20	25	1.99
61968124--61968156	2	16.5	2	100	0	66	48	0	0	51	1.00
61968867--61969012	39	3.7	40	83	8	181	23	21	28	26	1.99
61982557--61982670	37	3.1	38	89	5	171	26	30	17	25	1.97
61982800--61983093	48	6.0	48	87	3	426	31	23	6	37	1.81
61990599--61990703	42	2.5	42	98	0	201	30	14	32	22	1.94
61990712--61990779	27	2.5	27	85	2	91	27	13	26	32	1.93
61998601--61998707	42	2.5	42	96	0	196	30	14	32	22	1.93
61998716--61998785	27	2.5	28	88	2	106	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62004622--62004739	41	3.1	41	60	28	98	32	17	28	21	1.96
62004590--62004753	71	2.3	71	100	0	328	35	17	28	18	1.94
62012168--62012285	41	3.1	41	60	28	98	32	17	28	21	1.96
62012136--62012299	71	2.3	71	100	0	328	35	17	28	18	1.94
62019566--62019786	40	5.6	40	83	5	261	25	26	23	24	2.00
62019566--62019786	81	2.8	80	85	4	270	25	26	23	24	2.00
62024926--62025011	17	5.0	17	71	18	70	69	1	19	9	1.22
62024970--62025013	19	2.2	19	84	8	52	77	0	13	9	0.99
62024984--62025044	18	3.3	18	69	4	50	70	1	11	16	1.24
62029641--62029698	20	2.7	22	73	7	57	41	13	17	27	1.87
62033212--62033387	46	3.8	46	81	10	232	20	21	29	28	1.98
62033208--62033379	93	1.8	93	96	0	317	20	22	30	27	1.98
62036337--62036415	15	5.4	15	77	10	83	10	17	13	58	1.63
62036328--62036414	29	3.0	29	81	8	95	10	17	16	56	1.67
62038798--62038973	46	3.8	46	81	10	232	20	21	29	28	1.98
62038794--62038965	93	1.8	93	96	0	317	20	22	30	27	1.98
62041329--62041363	13	2.7	13	95	0	61	62	5	0	31	1.18
62044452--62044508	28	2.0	28	89	6	87	14	8	5	71	1.27
62045704--62045738	13	2.7	13	95	0	61	62	5	0	31	1.18
62045953--62045999	21	2.3	20	88	3	67	40	19	19	21	1.92
62045961--62046007	20	2.3	21	92	3	78	34	19	23	23	1.97
62058102--62058157	14	4.0	14	90	0	85	19	30	5	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62058093--62058156	28	2.3	28	91	0	101	23	31	3	42	1.70
62058956--62059008	17	3.0	17	73	10	52	32	15	11	41	1.82
62062044--62062153	40	2.8	40	84	0	139	26	22	26	24	2.00
62062044--62062193	40	3.8	39	78	7	124	26	22	26	25	2.00
62067891--62068074	40	4.6	40	84	6	239	25	23	26	24	2.00
62067891--62068074	80	2.3	80	88	3	264	25	23	26	24	2.00
62075946--62076047	39	2.6	40	79	11	113	26	21	26	25	2.00
62077769--62077820	19	2.7	19	93	0	95	50	13	9	26	1.72
62081090--62081145	27	2.1	27	90	9	89	39	16	10	33	1.83
62085311--62085532	39	5.7	40	87	7	264	25	27	20	26	1.99
62085313--62085518	79	2.6	78	85	7	251	25	26	19	27	1.99
62093460--62093676	39	5.7	41	88	8	268	25	26	21	26	1.99
62093460--62093670	79	2.8	79	84	11	273	26	26	20	27	1.99
62097966--62098039	11	6.7	11	86	9	82	14	4	9	71	1.26
62097966--62098055	11	7.7	12	79	10	64	14	6	7	71	1.30
62097967--62098015	21	2.3	21	89	0	80	18	2	8	71	1.21
62097967--62098039	32	2.2	31	85	9	92	15	4	9	71	1.27
62098033--62098179	82	1.9	76	84	8	195	27	14	8	50	1.71
62098035--62098199	82	2.1	76	81	8	179	27	14	8	49	1.72
62098806--62098845	21	1.9	20	85	10	53	22	22	20	35	1.96
62099464--62099519	27	2.1	26	90	9	87	39	17	8	33	1.81
62104637--62104731	27	3.5	26	77	8	91	42	21	7	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62104736--62104823	27	3.3	27	88	6	133	34	21	6	37	1.80
62104736--62104851	54	2.1	54	82	0	133	34	20	7	37	1.82
62104749--62104888	27	5.2	27	81	0	91	38	22	6	32	1.79
62104921--62104983	32	2.0	32	90	6	101	28	14	28	28	1.95
62104900--62105019	27	4.3	27	77	10	123	32	16	23	27	1.96
62105424--62105469	19	2.4	19	88	0	65	17	19	17	45	1.85
62105414--62105489	6	12.3	6	70	20	50	19	17	14	48	1.81
62107491--62107538	10	4.8	10	86	0	60	29	27	12	31	1.93
62107492--62107538	20	2.3	20	85	0	67	29	25	12	31	1.93
62107491--62107557	30	2.2	31	83	2	82	25	28	13	32	1.93
62111297--62111340	12	3.7	12	81	0	52	11	29	0	59	1.32
62111390--62111487	51	1.9	51	95	0	178	6	29	4	60	1.40
62111474--62111504	15	2.1	15	93	0	53	0	19	3	77	0.90
62119715--62119747	12	2.6	13	85	9	50	9	45	0	45	1.35
62120819--62120876	28	2.1	28	90	0	89	34	25	8	31	1.86
62120994--62121065	27	2.6	27	86	4	99	23	26	18	31	1.97
62120984--62121073	28	3.2	27	82	7	110	21	24	22	32	1.98
62120994--62121084	27	3.2	28	82	4	94	23	26	18	31	1.97
62120984--62121098	55	2.1	56	82	8	137	20	24	20	34	1.96
62122632--62122675	10	4.5	10	91	8	65	65	6	6	20	1.39
62122640--62122681	20	2.1	20	82	8	50	66	7	9	16	1.42
62126337--62126403	29	2.3	29	97	2	125	49	11	5	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62129229--62129288	27	2.3	27	85	2	77	21	23	20	35	1.96
62131624--62131677	23	2.3	23	80	3	54	48	12	5	33	1.65
62134862--62134889	10	2.8	10	100	0	56	92	0	7	0	0.37
62137750--62137795	10	4.6	10	83	5	58	23	26	15	34	1.94
62137750--62137796	20	2.3	21	85	10	71	25	25	14	34	1.94
62139400--62139571	93	1.8	93	96	0	317	27	30	22	20	1.98
62139392--62139567	46	3.8	46	81	10	232	28	29	21	20	1.98
62141948--62142035	29	3.0	29	80	8	97	56	15	17	10	1.66
62141948--62142026	15	5.4	15	77	10	83	58	13	17	10	1.63
62141959--62142035	15	5.2	15	75	9	77	55	15	16	11	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328