genome.fa.s7.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  157  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45833087--45833258	46	3.8	45	80	11	215	21	21	27	29	1.99
45833084--45833253	92	1.8	92	96	0	313	21	21	28	28	1.99
45836773--45836961	38	4.9	38	83	6	193	21	21	26	30	1.99
45844272--45844328	30	1.9	30	88	0	87	31	8	28	31	1.87
45844663--45844836	48	3.7	47	82	5	208	29	17	26	25	1.98
45844663--45844836	94	1.8	95	87	3	262	29	17	26	25	1.98
45847545--45847579	17	2.1	17	100	0	70	22	20	22	34	1.97
45852429--45852911	69	7.0	69	81	3	465	35	24	20	20	1.96
45852422--45852870	207	2.2	207	81	3	521	35	24	19	20	1.96
45859631--45859790	29	5.5	30	88	8	222	33	13	25	27	1.94
45859631--45859790	59	2.8	57	89	4	223	33	13	25	27	1.94
45867548--45867707	29	5.5	30	88	8	222	33	13	25	27	1.94
45867548--45867707	59	2.8	57	89	4	223	33	13	25	27	1.94
45869830--45869907	29	2.7	29	88	5	106	23	16	34	25	1.95
45873034--45873118	31	2.7	31	79	0	107	21	31	37	9	1.85
45875696--45875807	27	4.2	26	78	11	109	16	20	22	40	1.91
45888598--45888708	27	4.2	26	82	13	127	17	24	22	36	1.95
45888598--45888708	54	2.1	53	86	5	152	17	24	22	36	1.95
45893189--45893216	14	2.0	14	100	0	56	28	7	21	42	1.79
45897472--45897507	18	2.1	18	89	5	56	27	13	13	44	1.82
45898721--45898800	29	2.8	28	83	7	99	27	35	15	22	1.94
45899828--45899854	4	6.8	4	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45904321--45904353	9	3.7	9	88	11	50	12	21	48	18	1.80
45907857--45907992	50	2.7	50	94	0	245	19	13	31	36	1.90
45911813--45911996	40	4.7	40	88	3	241	26	21	28	23	1.99
45919860--45920040	40	4.5	40	86	2	220	25	23	26	24	2.00
45919862--45920040	80	2.2	81	85	1	243	25	23	26	24	2.00
45919899--45920080	80	2.3	80	81	0	195	28	23	25	23	2.00
45930008--45930228	40	5.6	41	80	9	237	25	23	26	24	2.00
45933441--45933569	46	2.8	46	96	0	231	29	28	21	20	1.98
45933446--45933588	46	3.1	45	88	4	146	28	28	21	20	1.98
45937709--45937965	43	5.6	48	76	11	179	31	22	15	30	1.95
45942807--45942849	17	2.5	17	84	3	50	83	4	11	0	0.78
45944077--45944223	40	3.7	40	82	0	132	27	23	25	23	2.00
45944118--45944244	40	3.2	39	84	8	150	23	25	28	22	1.99
45952111--45952257	40	3.7	40	82	0	132	27	23	25	23	2.00
45952152--45952278	40	3.2	39	84	8	150	23	25	28	22	1.99
45968073--45968281	105	2.0	105	97	0	391	25	29	25	19	1.98
45969835--45969896	28	2.2	28	82	0	70	25	20	17	35	1.95
45969910--45969995	40	2.2	39	85	2	109	29	27	17	25	1.97
45973760--45973855	43	2.2	43	79	3	104	30	27	15	27	1.96
45973827--45974001	50	3.6	49	78	9	171	22	29	18	29	1.97
45975617--45975770	25	6.2	25	89	6	190	28	22	18	30	1.97
45975626--45975772	49	3.0	50	82	12	189	29	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45975821--45975887	20	3.3	20	85	8	100	32	19	13	34	1.91
45979484--45979557	29	2.6	29	95	0	139	27	14	31	27	1.95
45981969--45982166	71	2.8	70	92	3	294	33	17	28	20	1.95
45982035--45982152	41	3.1	41	60	28	98	32	17	28	21	1.96
45982003--45982166	71	2.3	71	100	0	328	35	17	28	18	1.94
45989514--45989710	71	2.8	70	91	4	285	34	17	28	20	1.95
45989580--45989697	41	3.1	41	60	28	98	32	17	28	21	1.96
45989548--45989710	71	2.3	71	98	1	319	35	17	28	19	1.94
45989548--45989733	71	2.7	68	92	6	263	34	17	28	18	1.94
45994756--45994980	40	5.6	40	88	6	321	26	27	22	23	2.00
45994756--45994980	83	2.8	80	89	5	321	26	27	22	23	2.00
45994756--45994980	123	1.9	119	90	3	360	26	27	22	23	2.00
45999542--45999711	46	3.7	45	79	7	198	28	30	20	20	1.98
45999550--45999720	93	1.8	93	91	0	279	27	29	21	21	1.99
45999593--45999736	46	3.1	45	73	21	120	28	28	20	22	1.98
46010210--46010380	43	4.0	43	69	10	136	24	15	26	33	1.95
46010550--46010593	18	2.3	19	88	7	63	50	0	13	36	1.42
46037994--46038028	17	2.1	17	88	0	52	31	28	17	22	1.96
46041525--46041635	48	2.5	43	74	14	107	36	24	12	26	1.91
46041544--46041655	48	2.3	48	84	0	143	34	23	14	27	1.93
46041641--46041768	43	3.0	43	85	1	184	25	25	19	30	1.98
46047562--46047698	41	3.3	40	78	10	141	32	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46048935--46049057	24	5.2	24	96	2	212	27	20	21	30	1.98
46048935--46049057	47	2.6	48	93	2	212	27	20	21	30	1.98
46049107--46049145	20	2.0	20	100	0	78	30	20	12	35	1.90
46049108--46049152	20	2.2	20	92	0	72	31	22	13	33	1.92
46049189--46049236	25	1.9	25	86	0	69	25	16	25	33	1.96
46054565--46054728	71	2.3	71	100	0	328	18	28	17	35	1.94
46054565--46054762	71	2.8	70	91	3	258	20	28	17	33	1.95
46059595--46059723	24	5.4	24	92	2	188	27	22	20	29	1.98
46059595--46059723	47	2.7	48	89	3	188	27	22	20	29	1.98
46059772--46059838	20	3.3	20	89	0	107	32	22	11	32	1.90
46059875--46059922	25	1.9	25	86	0	69	25	16	25	33	1.96
46069019--46069170	43	3.6	42	80	8	148	30	28	18	22	1.97
46069019--46069143	41	3.0	43	83	4	146	30	28	17	23	1.97
46071752--46071821	27	2.6	27	93	2	113	30	28	14	27	1.95
46074109--46074204	44	2.2	43	83	8	124	35	20	16	27	1.94
46078532--46078639	54	2.0	54	81	3	128	37	21	23	18	1.95
46078532--46078639	27	4.0	27	75	12	96	37	21	23	18	1.95
46079032--46079064	8	4.1	8	85	14	50	3	21	24	51	1.62
46096892--46096935	16	2.8	15	83	10	61	47	22	20	9	1.78
46097146--46097245	29	3.5	29	83	6	123	28	15	28	29	1.96
46100237--46100300	28	2.3	27	91	2	101	39	28	6	26	1.80
46100404--46100515	27	4.2	26	85	7	134	17	24	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46108273--46108499	49	4.6	49	88	2	292	29	27	17	25	1.97
46108269--46108507	101	2.4	99	85	3	329	29	28	17	25	1.97
46111196--46111256	27	2.2	28	82	2	70	39	24	8	27	1.84
46111204--46111264	28	2.2	27	91	2	95	36	27	8	27	1.85
46111375--46111485	27	4.1	26	86	6	123	19	21	21	36	1.95
46114834--46115016	40	4.6	39	79	6	174	24	24	27	24	2.00
46114834--46114984	77	1.9	78	82	6	189	25	23	27	24	2.00
46124180--46124311	29	4.6	29	84	1	149	25	16	32	25	1.96
46131528--46131694	40	4.2	41	80	5	164	24	26	22	26	2.00
46132520--46132565	17	2.5	19	74	22	53	34	23	17	23	1.96
46157472--46157525	24	2.2	24	86	0	81	25	1	22	50	1.59
46161534--46161634	28	3.4	28	72	17	96	35	15	21	26	1.94
46161522--46161640	61	2.0	61	93	0	202	38	15	21	24	1.92
46161530--46161723	57	3.3	57	83	4	192	36	15	22	25	1.93
46168066--46168096	2	15.5	2	93	0	53	51	3	0	45	1.17
46168189--46168261	29	2.5	29	93	0	101	26	31	16	26	1.96
46170060--46170084	11	2.3	11	100	0	50	60	8	0	32	1.26
46170078--46170148	25	2.9	25	91	6	110	63	1	14	21	1.38
46171691--46171719	2	14.5	2	100	0	58	51	0	0	48	1.00
46171820--46171884	29	2.2	29	100	0	130	27	27	15	29	1.96
46179649--46179679	2	15.5	2	93	0	53	51	3	0	45	1.17
46179772--46179843	28	2.5	28	90	2	90	26	31	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46179780--46179843	28	2.2	29	94	2	112	26	28	17	28	1.97
46181435--46181626	40	4.8	40	85	9	257	23	22	27	26	1.99
46186651--46186837	71	2.7	68	93	5	281	18	28	18	34	1.95
46186674--46186837	71	2.3	71	100	0	328	18	28	17	35	1.94
46186674--46186871	71	2.8	70	92	3	276	20	28	17	33	1.95
46194206--46194392	71	2.7	68	93	5	281	18	28	18	34	1.95
46194229--46194392	71	2.3	71	100	0	328	18	28	17	35	1.94
46194229--46194426	71	2.8	70	92	3	276	20	28	17	33	1.95
46196721--46196768	21	2.3	20	79	6	60	41	16	18	22	1.90
46196728--46196767	21	1.9	21	89	0	62	42	15	17	25	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328