genome.fa.s7.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  112  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31673326--31673388	20	3.2	20	95	0	117	31	19	12	36	1.89
31673425--31673472	25	1.9	25	86	0	69	25	16	25	33	1.96
31681039--31681067	15	1.9	15	100	0	58	27	20	17	34	1.95
31683677--31683809	55	2.4	54	77	6	135	38	20	21	19	1.94
31688616--31688662	23	2.0	23	91	0	76	36	6	19	38	1.77
31690142--31690179	20	1.9	20	88	0	58	34	2	10	52	1.50
31697499--31697651	40	3.8	40	80	4	155	23	22	28	26	1.99
31707833--31707867	17	2.0	18	88	5	54	20	42	25	11	1.85
31714815--31714899	38	2.2	38	85	4	118	24	24	23	27	2.00
31714799--31714938	38	3.6	38	78	9	113	26	22	22	27	1.99
31716746--31716857	27	4.2	26	82	7	116	38	20	23	17	1.93
31716746--31716857	54	2.1	54	83	3	136	38	20	23	17	1.93
31724610--31724718	27	4.0	26	81	10	121	38	22	22	15	1.92
31728993--31729331	123	2.8	123	95	0	597	30	11	25	33	1.91
31729300--31729488	40	4.7	40	86	1	236	26	20	24	28	1.99
31747904--31748039	26	5.3	26	82	3	163	27	22	22	26	1.99
31747904--31748039	52	2.7	51	88	5	197	27	22	22	26	1.99
31748088--31748163	20	3.9	20	91	6	113	34	18	9	38	1.83
31748088--31748144	11	5.5	11	72	16	59	31	19	10	38	1.86
31748088--31748162	9	7.6	10	71	16	59	33	18	9	38	1.83
31750496--31750779	145	2.0	144	85	4	385	25	27	17	29	1.97
31750445--31750779	48	7.0	48	75	9	261	24	27	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31755394--31755447	27	1.9	29	88	7	85	42	16	5	35	1.72
31763613--31763729	31	3.8	31	89	1	164	27	24	14	33	1.94
31763934--31764016	26	3.3	26	90	6	100	26	24	24	25	2.00
31763947--31764016	26	2.7	26	97	2	133	27	24	27	21	1.99
31765975--31766003	2	14.5	2	100	0	58	51	0	0	48	1.00
31767705--31767771	30	2.2	30	83	0	80	31	22	5	40	1.78
31767719--31767795	30	2.6	30	93	0	127	23	28	3	44	1.71
31768837--31769005	46	3.7	46	77	15	195	23	20	27	28	1.99
31768830--31769000	93	1.8	93	93	2	299	22	21	27	28	1.99
31772235--31772295	30	2.0	30	83	0	77	31	22	8	37	1.84
31780191--31780361	46	3.7	45	78	12	186	22	19	28	29	1.98
31780187--31780356	92	1.8	93	91	1	279	21	20	28	29	1.98
31780584--31780621	19	2.0	20	85	15	53	39	0	21	39	1.53
31781164--31781194	15	2.1	15	100	0	62	25	38	16	19	1.92
31785110--31785210	28	3.5	28	84	4	103	28	13	27	29	1.95
31785139--31785210	29	2.5	29	91	6	112	30	13	26	29	1.94
31792550--31792650	28	3.5	28	84	4	103	28	13	27	29	1.95
31792579--31792650	29	2.5	29	91	6	112	30	13	26	29	1.94
31797943--31798114	46	3.7	46	78	13	208	22	20	27	29	1.98
31797939--31798109	93	1.8	93	94	0	306	21	20	28	29	1.98
31798339--31798376	19	2.0	20	85	15	53	39	0	21	39	1.53
31799638--31799746	31	3.5	31	92	0	173	23	23	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31799952--31800011	26	2.4	25	83	10	77	30	20	20	30	1.97
31799965--31800060	26	3.8	26	84	2	99	26	21	27	25	2.00
31800002--31800049	25	2.0	25	87	4	71	20	25	31	22	1.98
31803543--31803569	14	1.9	14	100	0	54	62	7	7	22	1.46
31806043--31806076	6	5.8	6	86	6	52	67	0	2	29	1.05
31806041--31806076	11	3.2	11	92	4	54	69	0	2	27	1.02
31810419--31810476	28	2.1	28	100	0	116	17	20	29	32	1.95
31816248--31816340	27	3.4	27	81	11	109	38	19	23	18	1.93
31818783--31818822	20	2.1	19	85	4	53	45	10	7	37	1.66
31821201--31821249	24	2.1	22	81	7	53	36	8	4	51	1.51
31838314--31838363	22	2.3	22	79	6	57	58	6	18	18	1.59
31839183--31839231	3	16.3	3	100	0	98	34	0	0	65	0.93
31844738--31844818	25	3.2	25	84	8	101	34	16	7	41	1.76
31850217--31850275	29	2.0	29	96	0	109	18	20	23	37	1.94
31850217--31850283	29	2.5	27	85	9	75	20	22	20	35	1.96
31853086--31853125	4	10.5	4	80	20	50	0	20	0	80	0.72
31853085--31853125	14	3.0	14	85	3	57	0	19	0	80	0.71
31853085--31853125	18	2.1	19	86	13	57	0	19	0	80	0.71
31858076--31858643	47	12.1	47	94	0	969	34	12	28	25	1.91
31858458--31858533	25	3.2	25	63	30	65	32	11	28	26	1.92
31860128--31860642	40	12.9	40	93	0	764	22	21	29	26	1.99
31860677--31860746	29	2.5	28	81	4	77	25	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31864811--31864886	25	3.2	25	63	30	65	32	11	28	26	1.92
31864478--31864996	139	3.7	139	95	0	894	35	12	27	25	1.91
31864478--31864996	47	11.1	47	93	1	857	35	12	27	25	1.91
31867800--31867849	22	2.3	22	76	10	57	16	16	2	66	1.35
31870136--31870173	20	1.9	20	84	10	51	65	7	2	23	1.32
31870134--31870198	19	3.4	19	76	21	57	60	6	1	32	1.31
31870667--31870711	19	2.3	20	84	3	56	33	6	2	57	1.37
31870660--31870724	10	6.5	10	75	16	55	33	4	1	60	1.27
31870683--31870736	19	2.7	21	86	8	69	33	1	1	62	1.16
31870748--31870780	18	1.9	17	88	11	50	42	12	15	30	1.83
31870891--31870952	32	1.9	32	86	0	88	30	24	20	24	1.99
31871367--31871443	20	3.7	20	75	13	73	50	15	3	29	1.62
31871526--31871573	20	2.4	20	89	0	69	54	12	2	31	1.49
31871610--31871664	23	2.7	19	72	20	56	34	14	7	43	1.73
31871619--31871667	23	2.1	23	100	0	98	34	16	4	44	1.66
31872688--31872719	17	1.9	17	93	6	57	56	0	0	43	0.99
31872693--31872726	17	2.0	17	88	0	50	58	0	0	41	0.98
31879600--31879757	42	3.7	42	76	5	138	29	21	14	34	1.93
31884628--31884658	16	1.9	16	93	0	53	29	0	12	58	1.35
31885438--31885474	17	2.2	17	100	0	74	75	5	13	5	1.15
31894081--31894144	33	1.9	33	87	0	92	34	23	7	34	1.84
31899907--31899984	30	2.6	30	86	6	104	19	35	29	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31900579--31900612	2	17.0	2	100	0	68	50	0	0	50	1.00
31903226--31903301	26	2.9	26	75	7	64	31	15	10	42	1.81
31926023--31926052	13	2.3	13	100	0	60	33	0	16	50	1.46
31932244--31932504	46	5.6	47	74	13	209	27	19	29	23	1.98
31934029--31934294	130	2.0	132	94	2	464	21	28	27	22	1.99
31938809--31938845	3	12.3	3	100	0	74	32	0	0	67	0.91
31938920--31938954	17	2.0	18	88	5	54	54	8	20	17	1.68
31939970--31940290	46	6.7	47	74	15	225	29	19	27	23	1.98
31946436--31946470	17	2.1	17	100	0	70	28	17	42	11	1.83
31949344--31949615	38	7.1	38	88	1	382	21	22	25	30	1.99
31949608--31949689	43	1.9	43	89	0	128	12	24	34	29	1.91
31951173--31951212	21	1.9	21	85	10	55	62	5	5	27	1.37
31967706--31967878	46	3.7	46	77	13	201	21	20	27	29	1.98
31967703--31967873	93	1.8	93	94	0	306	21	21	28	28	1.98
31969552--31969817	46	5.8	44	75	11	187	25	30	19	25	1.98
31969686--31969816	47	2.8	46	82	10	158	22	30	19	26	1.98
31974482--31974562	34	2.4	33	85	2	108	20	25	24	28	1.99
31985642--31985677	16	2.2	16	100	0	72	11	16	11	61	1.57
31988173--31988343	45	3.8	45	80	13	206	21	20	28	29	1.98
31988170--31988338	92	1.8	92	93	2	295	21	20	28	28	1.98
31988568--31988605	19	2.0	20	85	15	53	36	0	23	39	1.55
31995544--31995716	46	3.7	46	79	10	208	21	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995541--31995711	93	1.8	93	93	0	297	21	21	28	28	1.98
31995941--31995978	19	2.0	20	85	15	53	36	0	23	39	1.55
32000759--32000791	11	2.9	12	86	13	52	33	0	0	66	0.92
32000914--32000975	30	2.1	30	90	3	99	58	11	3	27	1.48
32001813--32002032	108	2.0	108	100	0	440	45	7	16	30	1.74
32003228--32003357	21	6.2	20	79	7	91	16	20	16	46	1.84
32003241--32003356	42	2.8	42	85	2	153	16	19	17	46	1.84
32003282--32003410	64	2.0	63	81	10	147	17	20	16	44	1.86
32003241--32003443	106	1.9	104	82	9	252	18	20	16	45	1.86
32007423--32007523	44	2.3	44	80	13	118	29	27	17	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328