genome.fa.s7.2.7.7.80.10.50.1000.250.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  250  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74373464--74373553	27	3.3	27	85	3	119	32	10	17	40	1.83
74373142--74373512	80	4.6	81	83	1	280	39	9	21	29	1.85
74373447--74373553	54	2.0	54	81	7	128	30	10	20	38	1.86
74373464--74373568	27	3.9	27	79	9	90	34	9	17	39	1.82
74375649--74376748	550	2.0	550	99	0	2155	35	18	17	28	1.94
74377949--74378010	27	2.3	27	91	0	97	27	16	16	40	1.89
74377993--74378078	27	3.2	27	78	6	77	29	6	20	43	1.78
74378057--74378373	54	5.9	54	89	2	442	40	8	22	28	1.83
74378057--74378373	134	2.4	134	87	4	444	40	8	22	28	1.83
74378057--74378373	27	11.8	27	85	2	397	40	8	22	28	1.83
74378379--74378468	27	3.3	27	85	3	119	32	10	17	40	1.83
74378057--74378427	134	2.8	134	85	2	415	39	9	21	29	1.84
74378057--74378427	80	4.6	81	84	2	300	39	9	21	29	1.84
74378362--74378468	54	2.0	54	81	7	128	30	10	20	38	1.86
74378379--74378483	27	3.9	27	79	9	90	34	9	17	39	1.82
74381821--74381867	22	2.1	21	84	11	58	31	25	25	17	1.97
74386150--74386297	80	1.9	80	80	4	174	22	29	25	22	1.99
74386190--74386297	40	2.7	38	85	8	128	21	29	25	23	1.99
74394262--74394409	80	1.9	80	80	4	174	22	29	25	22	1.99
74394302--74394409	40	2.7	38	85	8	128	21	29	25	23	1.99
74404267--74404445	40	4.4	40	84	2	198	22	25	24	27	2.00
74413738--74413913	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74413735--74413906	93	1.8	93	96	0	317	20	21	29	27	1.98
74420834--74421009	46	3.8	46	79	12	216	20	21	29	28	1.98
74420831--74421002	93	1.8	93	96	0	317	20	21	29	27	1.98
74429085--74429444	46	7.6	45	76	10	221	23	28	18	28	1.98
74429083--74429447	94	3.9	92	75	14	293	23	29	18	28	1.98
74429083--74429447	140	2.6	143	80	6	422	23	29	18	28	1.98
74431248--74432098	423	2.0	423	83	3	1077	37	15	18	28	1.91
74437509--74437546	2	19.0	2	88	0	58	44	2	0	52	1.14
74438862--74438940	31	2.4	32	76	16	81	36	1	0	62	1.04
74438861--74438916	17	3.3	17	73	14	53	30	0	0	69	0.89
74438858--74438917	18	3.4	18	71	13	54	31	0	0	68	0.90
74439547--74439598	10	5.1	10	73	13	52	53	1	0	44	1.11
74439534--74439639	41	2.5	44	80	10	121	54	0	0	44	1.06
74440052--74440083	13	2.5	13	94	0	55	40	9	12	37	1.75
74440056--74440132	39	2.0	39	81	0	91	37	7	19	35	1.81
74440093--74440124	13	2.5	13	94	0	55	25	9	21	43	1.82
74440654--74440679	9	2.9	9	100	0	52	76	0	0	23	0.78
74440698--74440731	17	2.0	17	88	11	52	52	5	8	32	1.56
74450423--74450498	34	2.2	34	83	0	89	27	22	21	28	1.99
74451881--74451908	3	9.3	3	100	0	56	67	0	32	0	0.91
74454861--74455082	48	4.6	48	84	0	246	26	17	27	29	1.98
74454859--74455082	96	2.3	96	84	1	288	26	17	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74457379--74457424	17	2.8	17	83	3	58	34	39	6	19	1.78
74457513--74457564	23	2.3	23	86	0	68	36	21	13	28	1.91
74457541--74457600	29	2.1	29	100	0	120	36	16	13	33	1.88
74458756--74458882	46	2.7	47	89	7	195	34	19	17	28	1.95
74463182--74463283	29	3.6	27	81	5	96	29	32	16	21	1.95
74464990--74465021	13	2.5	13	94	0	55	9	15	43	31	1.78
74465426--74465457	16	2.0	16	93	0	55	18	21	25	34	1.96
74468956--74469004	25	2.0	25	84	8	64	32	18	18	30	1.95
74470136--74470170	19	1.9	17	88	11	52	34	5	0	60	1.21
74474477--74474575	28	3.5	29	94	5	168	32	27	12	28	1.92
74475660--74475697	19	2.1	18	85	9	51	13	18	2	65	1.37
74482403--74482429	6	4.5	6	100	0	54	14	0	0	85	0.61
74491967--74492030	31	2.1	31	93	0	110	25	21	15	37	1.93
74492224--74492437	24	9.0	24	89	3	308	26	21	22	29	1.99
74492495--74492551	9	5.9	9	73	15	51	35	21	8	35	1.84
74492491--74492553	20	3.2	20	95	0	117	31	19	12	36	1.89
74492590--74492637	25	1.9	25	82	0	60	25	14	25	35	1.94
74493797--74493880	27	3.1	27	89	3	116	21	25	21	32	1.98
74493797--74493890	27	3.5	26	85	7	109	21	24	19	35	1.96
74493942--74493997	27	2.1	26	90	3	85	39	10	10	39	1.75
74494015--74494129	27	4.3	26	75	10	90	29	7	21	40	1.81
74494032--74494147	27	4.3	27	81	8	146	29	6	22	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74494151--74494400	27	8.9	27	79	8	140	42	8	21	27	1.82
74494030--74494182	81	1.9	81	80	8	177	33	7	20	38	1.80
74494123--74494424	81	3.6	81	75	8	226	40	8	21	29	1.83
74494159--74494424	54	4.7	54	77	9	237	41	8	22	27	1.83
74494239--74494319	37	2.2	38	86	2	110	38	7	30	23	1.82
74494194--74494376	91	2.0	91	84	0	240	40	8	24	26	1.83
74494167--74494402	118	2.0	118	87	0	337	41	8	22	27	1.84
74494285--74494424	27	5.2	27	86	0	154	40	8	23	27	1.83
74494157--74494421	145	1.8	145	87	0	397	41	8	22	27	1.83
74497412--74497440	13	2.2	13	100	0	58	31	0	13	55	1.39
74502206--74502318	27	4.2	26	82	7	127	37	20	23	18	1.94
74502206--74502318	54	2.1	54	85	3	147	37	20	23	18	1.94
74502734--74502764	8	3.9	8	91	0	53	3	22	25	48	1.66
74505710--74505766	9	5.9	9	73	15	51	35	8	21	35	1.84
74505708--74505778	20	3.5	20	94	0	124	35	11	21	32	1.89
74505719--74505773	11	5.4	11	70	16	55	36	12	20	30	1.90
74505823--74506013	24	8.0	24	91	4	280	28	22	21	27	1.99
74505823--74505992	47	3.6	47	94	1	295	28	22	20	28	1.99
74505823--74506013	71	2.7	71	89	5	278	28	22	21	27	1.99
74506206--74506269	31	2.1	31	87	0	92	35	14	25	25	1.93
74508654--74508696	17	2.5	17	88	11	61	81	4	13	0	0.84
74509081--74509187	40	2.7	40	82	0	124	28	22	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74509122--74509248	40	3.2	39	83	8	141	22	24	29	23	1.99
74511746--74511889	40	3.7	38	79	8	137	24	23	28	23	2.00
74511751--74511934	79	2.3	80	81	4	194	20	24	30	24	1.99
74512740--74513930	596	2.0	595	92	0	1997	32	15	22	29	1.95
74515777--74515805	13	2.2	13	100	0	58	31	0	13	55	1.39
74541411--74541458	18	2.4	19	80	16	53	50	4	2	43	1.33
74544197--74544418	110	2.0	110	100	0	444	43	6	20	29	1.77
74550976--74551182	53	3.8	53	72	5	182	38	18	23	19	1.93
74565719--74565796	39	2.0	39	97	0	147	28	20	16	34	1.94
74566397--74566426	15	2.1	15	93	6	53	30	6	26	36	1.82
74568611--74568652	19	2.2	19	83	8	50	35	11	2	50	1.52
74569026--74569129	28	3.6	27	72	19	84	25	28	19	26	1.98
74570643--74570751	24	4.6	23	85	7	137	33	23	17	24	1.96
74570643--74570751	48	2.3	48	91	3	175	33	23	17	24	1.96
74573432--74573461	15	2.0	15	93	0	51	73	0	16	10	1.09
74578521--74578705	40	4.6	39	85	4	217	28	22	25	23	2.00
74578520--74578726	80	2.6	80	83	4	247	26	22	26	25	2.00
74578519--74578726	40	5.2	39	83	5	211	26	22	25	25	2.00
74586520--74586704	40	4.6	39	85	4	217	28	22	25	23	2.00
74586519--74586725	80	2.6	80	83	4	247	26	22	26	25	2.00
74586518--74586725	40	5.2	39	83	5	211	26	22	25	25	2.00
74588848--74588936	37	2.4	37	100	0	178	37	38	13	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74589204--74589374	27	6.4	27	73	12	93	29	14	18	38	1.90
74589244--74589378	27	5.1	26	78	3	126	31	12	17	37	1.88
74589314--74589389	27	2.8	27	83	0	80	32	10	18	38	1.85
74591936--74591980	22	2.0	23	91	4	74	42	20	17	20	1.90
74592151--74592229	23	3.4	23	87	3	106	50	34	1	13	1.50
74592171--74592285	23	4.5	26	81	14	118	46	33	2	18	1.63
74595561--74595690	40	3.2	40	77	13	142	24	26	24	23	2.00
74595577--74595728	40	3.8	40	80	5	155	22	26	24	26	2.00
74595577--74595728	80	1.9	80	83	5	200	22	26	24	26	2.00
74603589--74603716	40	3.2	40	75	15	124	25	26	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328