genome.fa.s7.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  124  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35407412--35407540	40	3.2	40	83	6	154	24	21	27	26	1.99
35408920--35409142	47	4.8	48	77	8	183	23	27	19	29	1.98
35408966--35409136	94	1.8	94	87	2	254	23	28	18	29	1.98
35409614--35409651	19	2.0	19	85	10	51	31	28	0	39	1.57
35413048--35413324	49	5.8	46	77	8	182	23	27	20	28	1.99
35427882--35427934	26	2.1	25	82	3	61	35	1	7	54	1.40
35430335--35430460	50	2.6	48	86	5	166	29	19	27	23	1.98
35432108--35432138	11	2.8	11	100	0	62	19	35	19	25	1.95
35433296--35433356	30	2.1	29	90	3	95	59	13	3	24	1.49
35434104--35434148	18	2.3	20	78	17	51	55	2	0	42	1.12
35441952--35441986	14	2.5	14	90	0	52	31	8	31	28	1.87
35452722--35452885	40	4.1	40	81	4	161	25	28	20	25	1.99
35460315--35460478	40	4.1	40	81	4	170	25	28	21	24	1.99
35460301--35460478	80	2.2	80	81	3	198	24	28	21	25	1.99
35462217--35462258	22	1.9	22	95	0	75	40	14	9	35	1.78
35463735--35463936	40	5.1	40	92	1	298	22	23	28	25	2.00
35466784--35466915	29	4.6	29	83	1	149	25	32	16	25	1.96
35471167--35471209	21	2.0	21	100	0	86	53	4	18	23	1.63
35471169--35471217	21	2.3	21	92	0	80	51	6	14	28	1.66
35473295--35473415	46	2.6	48	88	5	167	23	28	19	28	1.99
35484415--35484549	38	3.4	38	72	15	119	40	15	0	43	1.52
35487726--35487795	21	3.3	21	73	13	63	71	2	4	21	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35487750--35487794	19	2.4	19	88	3	65	73	2	2	22	1.05
35487713--35487775	28	2.2	28	97	0	117	73	1	6	19	1.13
35492323--35492386	27	2.2	29	76	15	71	39	1	4	54	1.31
35492358--35492404	23	2.0	24	87	4	69	34	2	4	59	1.29
35493706--35493742	2	18.0	2	94	5	65	48	0	2	48	1.15
35495846--35495890	21	2.2	20	84	4	54	60	2	0	37	1.09
35499687--35499870	40	4.6	40	82	4	174	28	22	26	23	1.99
35507313--35507413	39	2.5	40	85	1	132	30	22	24	21	1.99
35507313--35507495	40	4.6	40	82	3	181	27	22	26	23	1.99
35510680--35510732	22	2.4	23	81	6	65	37	1	9	50	1.46
35510779--35510808	9	3.3	9	90	0	51	46	13	10	30	1.75
35510888--35510940	20	2.7	21	80	8	58	50	7	1	39	1.41
35511106--35511136	16	1.9	16	93	0	53	38	6	6	48	1.55
35520545--35520621	40	1.9	40	94	0	136	25	12	32	28	1.93
35523403--35523437	17	2.0	18	88	5	54	60	11	0	28	1.32
35523575--35523667	42	2.2	42	83	7	109	22	34	23	19	1.96
35524839--35525020	41	4.5	41	77	9	169	31	28	15	24	1.96
35524883--35525018	40	3.4	40	77	7	125	30	27	16	25	1.96
35544534--35544717	40	4.6	39	75	6	138	26	23	27	22	2.00
35544574--35544762	80	2.4	81	77	4	186	23	24	29	22	1.99
35566788--35566882	31	3.1	30	76	5	93	42	14	10	32	1.80
35568470--35568729	40	6.6	39	84	2	304	17	27	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35568470--35568746	79	3.5	78	82	3	313	17	28	18	36	1.93
35569281--35569352	20	3.7	20	74	9	76	15	29	19	36	1.92
35572973--35573233	40	6.6	40	92	2	413	28	26	21	24	1.99
35575112--35575169	29	2.0	29	93	0	98	44	3	1	50	1.29
35581608--35581683	23	3.2	25	62	24	63	28	13	34	23	1.92
35581581--35581813	47	5.0	47	90	2	369	31	11	30	26	1.92
35581976--35582062	37	2.4	37	94	0	147	24	17	33	25	1.96
35583323--35583509	71	2.7	68	92	5	272	18	28	18	34	1.95
35583346--35583509	71	2.3	71	98	0	319	18	28	18	34	1.95
35583346--35583543	71	2.8	70	90	3	258	20	28	17	33	1.96
35590896--35591059	71	2.3	71	97	0	310	18	28	18	34	1.95
35592349--35592419	37	1.9	37	88	0	106	23	18	28	29	1.98
35600462--35600528	21	3.2	21	64	16	57	25	8	13	52	1.69
35600456--35600542	42	2.1	42	100	0	174	26	9	11	52	1.67
35601929--35601985	30	1.9	30	96	0	105	21	36	24	17	1.94
35605500--35605532	2	17.0	2	93	6	59	48	0	0	51	1.00
35606910--35607027	45	2.7	46	82	6	163	27	17	27	27	1.98
35607324--35607494	38	4.5	38	86	4	220	22	22	24	30	1.99
35607324--35607494	76	2.2	76	89	2	254	22	22	24	30	1.99
35607487--35607659	45	3.9	45	83	6	201	23	23	28	24	1.99
35619352--35619467	56	2.1	57	95	1	207	37	10	6	44	1.65
35619823--35619878	20	2.8	21	78	8	62	21	8	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35619830--35619889	25	2.4	24	73	13	59	23	6	0	70	1.11
35619871--35619901	15	2.1	15	93	0	53	32	3	0	64	1.09
35620892--35620946	27	2.0	27	100	0	110	43	10	25	20	1.84
35625486--35625588	29	3.6	27	81	5	98	29	33	16	21	1.95
35635198--35635257	30	2.0	30	100	0	120	16	33	6	43	1.74
35649829--35649958	40	3.2	40	82	4	165	23	28	24	23	2.00
35649829--35649992	40	4.1	40	78	4	145	21	28	25	25	1.99
35657876--35658005	40	3.2	40	82	4	165	23	28	24	23	2.00
35657876--35658038	40	4.1	40	78	5	145	22	28	24	25	1.99
35665710--35665839	40	3.2	40	82	4	165	23	28	24	23	2.00
35665710--35665876	40	4.2	40	79	5	153	22	27	23	25	2.00
35673737--35673866	40	3.2	40	82	4	165	23	28	24	23	2.00
35673737--35673900	40	4.1	40	78	4	145	21	28	25	25	1.99
35699299--35699326	11	2.5	11	100	0	56	64	7	28	0	1.20
35705638--35705704	13	5.2	13	83	8	75	16	2	0	80	0.83
35705639--35705704	19	3.5	19	87	8	98	16	3	0	80	0.84
35709652--35709817	48	3.5	46	76	10	156	22	30	18	28	1.97
35717040--35717239	46	4.3	46	78	8	215	21	28	21	28	1.99
35720583--35720753	49	3.6	48	77	7	188	28	18	26	26	1.98
35722043--35722084	22	2.0	21	85	4	57	11	45	26	16	1.82
35729544--35729768	124	1.8	124	86	1	326	30	10	24	35	1.88
35729763--35729852	40	2.2	40	88	3	137	21	24	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35742778--35742938	39	4.2	39	91	0	252	24	33	19	22	1.97
35750673--35750835	39	4.2	39	91	0	263	23	33	20	22	1.97
35753800--35753970	93	1.8	92	93	1	297	21	21	29	27	1.98
35753805--35753978	46	3.8	46	79	8	201	21	21	29	28	1.98
35757566--35757728	39	4.2	39	91	0	263	23	33	20	22	1.97
35765499--35765661	39	4.2	39	91	0	263	23	33	20	22	1.97
35775275--35775460	40	4.7	39	83	4	201	28	22	24	24	1.99
35775274--35775465	80	2.4	80	81	5	226	28	21	25	25	1.99
35779588--35779653	28	2.2	29	82	12	73	48	0	19	31	1.49
35780058--35780168	40	2.8	40	76	6	107	29	14	23	32	1.94
35782719--35782757	11	3.7	11	80	13	55	12	23	0	64	1.28
35785300--35785568	47	5.8	46	75	11	138	30	18	27	23	1.98
35785351--35785569	46	4.7	46	79	10	162	30	18	28	22	1.97
35785351--35785567	93	2.3	95	80	8	239	30	18	28	23	1.97
35788721--35789038	46	6.7	48	76	11	248	25	29	18	26	1.98
35788817--35789088	94	2.9	93	81	9	288	24	29	18	27	1.98
35788815--35789083	140	1.9	141	83	6	348	24	28	18	27	1.98
35791465--35791504	20	2.0	20	90	0	62	32	12	27	27	1.93
35796596--35796856	138	1.9	138	93	0	450	24	20	30	24	1.98
35798821--35798881	29	2.1	29	82	11	72	24	14	22	37	1.92
35801445--35801539	40	2.4	42	82	7	108	28	29	16	25	1.97
35805413--35805451	18	2.1	19	90	4	62	33	2	33	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35810953--35811169	40	5.5	40	89	2	287	23	23	28	24	2.00
35811375--35811430	27	2.1	27	100	0	112	37	3	21	37	1.71
35815124--35816521	702	2.0	701	93	1	2399	39	19	8	33	1.81
35821562--35821608	19	2.6	18	77	16	51	46	14	2	36	1.57
35825411--35825574	71	2.3	71	100	0	328	18	28	17	35	1.94
35825411--35825608	71	2.8	70	91	3	258	20	28	17	33	1.95
35828216--35828258	14	3.1	14	89	0	68	30	25	27	16	1.97
35831143--35831274	43	3.1	43	91	0	219	43	20	21	15	1.88
35834739--35834765	13	2.1	13	100	0	54	14	37	33	14	1.88
35836113--35836284	93	1.8	93	96	0	317	27	30	22	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328