genome.fa.s7.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  141  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41062128--41062178	23	2.2	23	85	3	66	31	1	5	60	1.31
41065938--41065965	2	14.0	2	100	0	56	50	0	0	50	1.00
41066160--41066202	22	2.0	22	90	0	68	41	0	4	53	1.21
41066712--41066817	41	2.6	41	76	15	112	33	16	18	31	1.93
41067236--41067369	7	18.7	7	75	13	76	52	26	0	20	1.51
41067233--41067275	22	2.0	22	95	0	77	46	30	0	23	1.52
41067236--41067354	7	16.7	7	78	16	86	53	26	0	19	1.50
41067307--41067369	29	2.2	29	83	11	76	52	26	1	19	1.55
41067779--41067857	41	1.9	41	82	10	99	29	17	24	29	1.97
41067849--41068374	116	4.5	116	85	3	669	30	15	19	35	1.92
41067849--41068372	233	2.2	234	85	2	712	30	15	19	35	1.92
41071854--41071977	43	2.9	43	75	3	117	32	20	15	31	1.94
41080892--41080927	17	2.1	18	89	5	56	47	5	5	41	1.50
41080960--41080984	6	4.2	6	100	0	50	48	0	16	36	1.46
41093838--41093870	13	2.4	14	95	5	59	45	21	3	30	1.67
41102827--41102873	14	3.4	14	80	16	53	78	4	12	4	1.04
41106432--41106520	45	2.0	43	85	8	117	42	17	8	30	1.80
41110232--41110261	2	15.0	2	100	0	60	50	0	0	50	1.00
41111871--41111941	36	2.0	35	91	5	117	47	16	5	29	1.70
41111929--41111981	22	2.4	22	87	6	72	45	13	9	32	1.75
41116001--41116182	46	4.0	46	90	1	258	40	14	23	21	1.91
41118949--41119426	239	2.0	238	89	2	735	29	22	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41122047--41122083	18	2.1	18	90	5	58	13	37	27	21	1.91
41125251--41125285	16	2.2	16	100	0	70	42	11	8	37	1.72
41125363--41125427	22	3.0	22	79	0	76	15	27	20	36	1.92
41132453--41132517	22	3.0	22	88	0	94	16	26	18	38	1.92
41143173--41143233	32	1.9	32	82	0	77	18	32	27	21	1.96
41143188--41143253	32	2.1	32	85	5	89	19	31	25	22	1.98
41145598--41145628	2	15.5	2	100	0	62	51	0	0	48	1.00
41145937--41145969	8	4.4	8	85	14	52	36	0	0	63	0.95
41145924--41145969	14	3.4	14	80	19	53	34	0	0	65	0.93
41146014--41146064	20	2.5	22	75	12	56	52	0	0	47	1.00
41147441--41147529	31	2.9	30	75	8	81	41	6	5	46	1.54
41147753--41147809	3	19.0	3	96	0	105	33	0	1	64	1.04
41150768--41150820	21	2.6	20	72	3	61	52	41	0	5	1.25
41151344--41151375	11	2.9	11	100	0	64	0	46	0	53	1.00
41152078--41152121	23	2.0	22	86	4	61	34	0	4	61	1.16
41152204--41152259	24	2.3	25	82	14	64	30	3	8	57	1.47
41152314--41152350	19	1.9	19	94	0	65	32	13	2	51	1.55
41152419--41152454	9	4.0	9	85	0	54	38	0	2	58	1.13
41152418--41152460	20	2.0	20	86	8	59	39	0	2	58	1.11
41152510--41152555	24	1.9	24	86	0	65	41	8	4	45	1.55
41152684--41152753	37	1.9	35	81	18	81	30	12	0	57	1.36
41152861--41152916	25	2.3	24	79	14	62	37	16	3	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41164763--41166194	72	18.7	72	77	12	1092	30	16	19	33	1.94
41165248--41166199	74	12.6	74	77	11	848	31	16	19	32	1.94
41165091--41166199	238	4.9	228	86	8	1339	31	16	19	32	1.94
41165384--41165560	90	2.0	90	86	4	252	29	16	16	36	1.92
41165472--41166194	149	4.9	147	86	4	929	31	16	19	32	1.94
41167060--41167109	21	2.3	22	96	3	93	54	40	0	6	1.25
41169150--41169361	28	7.6	28	88	1	300	30	28	14	27	1.95
41169347--41169437	40	2.3	40	92	0	155	36	23	15	25	1.94
41170584--41170633	20	2.5	21	81	12	61	68	0	8	24	1.16
41173746--41173795	21	2.4	21	93	6	84	22	14	50	14	1.77
41173762--41173803	21	2.0	21	86	4	59	28	16	45	9	1.79
41174253--41174293	6	6.8	6	86	8	57	80	0	2	17	0.82
41174253--41174292	13	3.2	13	89	6	57	82	0	2	15	0.77
41180641--41180690	10	5.0	10	81	13	59	68	2	8	22	1.26
41186637--41186679	21	2.0	21	95	0	77	30	20	9	39	1.84
41190064--41190107	20	2.2	20	84	4	54	77	4	15	2	1.04
41193254--41193322	27	2.5	28	80	2	86	27	7	11	53	1.63
41193256--41193322	28	2.4	27	80	2	80	28	7	10	53	1.62
41194753--41194825	23	3.2	23	88	0	101	19	15	21	43	1.87
41197142--41197168	12	2.2	12	100	0	54	7	14	29	48	1.71
41197199--41197445	41	6.0	41	87	1	318	32	23	24	19	1.97
41197666--41197729	7	9.0	7	77	3	56	23	3	26	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41197682--41197732	15	3.5	15	81	2	59	21	1	29	47	1.62
41198334--41198410	8	10.0	8	86	8	106	66	1	0	32	1.00
41198342--41198399	14	4.0	14	88	4	80	68	0	0	31	0.89
41199645--41199677	17	1.9	17	93	0	57	33	9	24	33	1.87
41201110--41201147	18	2.2	18	85	4	51	26	0	2	71	1.00
41201138--41201185	20	2.4	21	82	10	64	22	2	6	68	1.23
41201249--41201302	28	2.0	28	85	3	74	27	3	3	64	1.27
41201317--41201455	43	3.3	43	91	4	214	21	20	32	25	1.97
41205256--41205286	7	4.4	7	100	0	62	70	16	12	0	1.16
41206347--41206404	30	1.9	31	92	3	100	55	13	3	27	1.55
41209600--41209659	29	2.1	29	80	0	66	30	10	15	45	1.78
41223386--41223464	38	2.1	37	81	6	88	55	3	1	39	1.26
41223414--41223456	21	2.1	20	82	4	50	55	4	0	39	1.20
41223410--41223482	29	2.4	32	71	19	75	53	4	0	42	1.20
41225210--41225257	25	2.0	25	84	12	64	60	4	0	35	1.16
41227419--41227716	45	6.6	45	79	5	241	23	17	14	45	1.85
41227462--41227710	90	2.8	90	83	3	297	22	16	14	46	1.83
41227465--41227708	135	1.8	134	82	6	314	23	15	14	46	1.83
41230485--41230686	73	2.8	73	85	0	242	30	18	16	34	1.93
41234623--41234672	9	5.8	8	82	17	64	16	4	0	80	0.87
41234623--41234672	17	2.9	16	85	14	64	16	4	0	80	0.87
41242331--41242483	62	2.5	62	82	8	177	20	30	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41245418--41245442	8	3.1	8	100	0	50	52	12	0	36	1.39
41245687--41245828	21	6.8	21	82	0	158	47	16	19	16	1.83
41245690--41245842	42	3.6	42	89	0	198	47	16	18	16	1.83
41245676--41245824	63	2.4	63	82	2	176	48	16	19	16	1.82
41245678--41245847	21	8.1	21	81	1	146	47	16	20	15	1.82
41247361--41247434	28	2.6	29	87	4	107	28	0	25	45	1.53
41247502--41247931	126	3.4	126	84	3	562	39	13	17	28	1.88
41247999--41248071	25	2.9	25	77	4	85	53	1	23	21	1.54
41251105--41251232	58	2.2	59	84	7	161	52	7	3	36	1.47
41254839--41254880	21	2.0	20	90	4	66	33	21	21	23	1.97
41255466--41255490	13	1.9	13	100	0	50	48	8	8	36	1.62
41261050--41261089	13	3.0	13	82	17	55	15	17	15	52	1.75
41261923--41261990	33	2.1	33	94	0	118	22	10	22	45	1.82
41273761--41273791	15	2.1	14	94	5	53	38	19	6	35	1.77
41275768--41275794	12	2.2	12	100	0	54	51	0	7	40	1.30
41275876--41275946	37	1.9	37	83	11	92	53	4	2	39	1.35
41282052--41282109	30	1.9	30	89	0	89	15	32	32	18	1.93
41284921--41284972	25	2.0	27	85	7	72	48	7	7	36	1.61
41285161--41285212	20	2.8	18	78	21	63	51	3	1	42	1.31
41300312--41300443	45	2.9	45	85	2	176	30	25	18	26	1.98
41307721--41307821	29	3.5	28	89	7	134	32	13	25	27	1.94
41307692--41307822	57	2.3	58	84	5	167	31	13	26	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41307692--41307821	30	4.5	30	84	10	162	31	13	26	28	1.94
41315602--41315732	30	4.5	30	84	8	162	31	13	25	29	1.94
41315602--41315733	58	2.3	58	84	4	167	31	13	26	28	1.94
41321077--41321371	148	2.0	148	95	0	527	28	21	17	32	1.96
41322661--41322696	18	2.0	18	100	0	72	16	11	22	50	1.77
41324987--41325087	28	3.5	30	82	6	118	29	14	26	28	1.95
41325016--41325091	29	2.7	28	76	13	75	30	14	26	28	1.95
41328518--41328618	28	3.5	29	86	6	125	29	27	13	28	1.95
41336317--41336417	28	3.5	29	86	6	125	29	27	13	28	1.95
41340413--41340437	12	2.1	12	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328