genome.fa.s7.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  205  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61667717--61667862	58	2.5	56	82	11	163	30	14	23	31	1.94
61670383--61670515	29	4.6	29	92	0	212	29	23	15	31	1.95
61678202--61678363	29	5.6	29	92	0	261	30	22	14	32	1.94
61683685--61683832	40	3.9	35	75	14	134	22	26	22	28	1.99
61683655--61683794	40	3.7	36	82	11	131	23	27	22	25	2.00
61687065--61687215	40	3.8	40	79	6	155	26	23	27	22	2.00
61687102--61687231	40	3.2	40	81	2	163	23	23	28	24	2.00
61695065--61695215	40	3.8	40	77	11	141	26	24	27	21	2.00
61695102--61695231	40	3.2	40	79	2	154	23	23	28	23	2.00
61695064--61695231	80	2.1	80	82	6	207	26	23	27	22	2.00
61701146--61701276	50	2.6	50	89	1	201	26	20	28	24	1.99
61706203--61706301	28	3.5	28	81	9	112	29	25	16	29	1.96
61715427--61715459	14	2.2	16	89	10	52	42	0	24	33	1.55
61719281--61719465	40	4.6	40	80	4	203	24	24	23	27	2.00
61724118--61724218	48	2.1	48	92	0	166	28	26	17	26	1.98
61726430--61726494	22	3.0	21	73	13	60	35	23	21	20	1.96
61726637--61726759	41	3.0	41	85	0	165	26	25	23	24	2.00
61726943--61726999	27	2.1	27	83	6	71	21	15	19	43	1.87
61726985--61727380	27	14.7	27	77	7	225	30	9	19	39	1.84
61726985--61727372	81	4.8	80	76	3	305	30	9	20	39	1.84
61727366--61727417	27	2.0	27	84	3	70	28	17	19	34	1.94
61728640--61728795	42	3.7	42	79	5	156	30	26	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61732164--61732375	80	2.7	80	86	5	295	26	25	22	25	2.00
61732164--61732368	40	5.2	40	85	2	263	26	26	22	24	2.00
61736483--61736652	93	1.8	93	92	2	288	27	28	21	22	1.99
61736479--61736650	46	3.7	46	77	14	192	28	27	21	22	1.99
61743038--61743244	40	5.2	39	83	7	231	26	28	21	24	1.99
61746581--61746710	47	2.8	43	84	11	152	26	17	31	23	1.97
61749452--61749598	79	1.9	79	80	5	172	23	30	24	21	1.99
61749492--61749598	40	2.7	38	85	7	126	21	29	25	23	1.99
61754270--61754377	40	2.7	38	85	8	128	21	29	25	23	1.99
61754229--61754377	80	1.9	80	81	2	183	22	30	24	22	1.99
61762338--61762445	40	2.7	38	85	8	128	21	29	25	23	1.99
61770610--61770741	65	2.0	65	94	0	228	30	15	20	34	1.93
61772829--61772957	40	3.3	39	79	6	145	24	27	24	23	2.00
61780560--61780735	46	3.8	46	77	11	180	20	21	29	28	1.98
61782926--61783054	40	3.2	40	79	10	138	23	22	27	26	1.99
61788021--61788152	29	4.6	29	91	0	201	25	32	15	26	1.95
61790125--61790180	15	3.7	15	88	7	87	12	16	10	60	1.58
61792575--61792750	46	3.8	46	76	10	178	22	21	27	28	1.99
61792571--61792743	93	1.9	93	90	0	274	23	21	27	27	1.99
61795378--61795553	40	4.4	40	88	2	257	23	22	26	26	2.00
61795366--61795582	80	2.7	81	85	6	300	24	23	27	24	2.00
61800382--61800484	29	3.6	28	80	5	116	29	33	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61808385--61808487	29	3.6	28	80	5	116	29	33	16	21	1.95
61814300--61814499	47	4.4	47	76	13	159	31	12	23	33	1.92
61814395--61814552	38	3.9	38	79	13	190	29	15	25	29	1.96
61814339--61814545	85	2.4	85	92	0	333	29	14	24	31	1.94
61818707--61818809	29	3.6	28	88	5	143	28	16	27	28	1.97
61824281--61824344	33	1.9	33	87	0	92	26	25	21	26	2.00
61824531--61824589	27	2.2	26	82	5	73	37	20	20	22	1.95
61824713--61824819	54	2.0	54	87	3	153	28	21	16	33	1.95
61824726--61824843	54	2.2	54	89	3	175	25	19	16	38	1.93
61824726--61824830	27	3.9	27	89	0	165	25	20	18	36	1.95
61827476--61827523	17	2.9	16	78	6	51	18	22	12	45	1.83
61828777--61828944	27	6.2	27	81	2	185	25	21	17	36	1.94
61828777--61828944	81	2.1	81	83	4	205	25	21	17	36	1.94
61828777--61828944	54	3.1	53	86	1	210	25	21	17	36	1.94
61836412--61836558	40	3.7	40	92	0	240	23	28	23	24	1.99
61836389--61836592	80	2.5	79	84	3	264	25	29	21	24	1.99
61837324--61837349	2	13.0	2	100	0	52	50	0	0	50	1.00
61844492--61844695	40	5.1	40	87	2	259	25	29	22	23	1.99
61844492--61844695	80	2.5	79	87	3	291	25	29	22	23	1.99
61847555--61847655	28	3.5	28	86	6	114	29	13	26	29	1.94
61855490--61855590	28	3.5	28	86	6	114	29	13	26	29	1.94
61877860--61878083	40	5.5	41	84	6	289	25	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61877874--61878083	83	2.6	80	86	5	280	26	26	22	24	2.00
61881841--61882027	71	2.7	68	93	5	281	18	28	18	34	1.95
61881864--61882027	71	2.3	71	100	0	328	18	28	17	35	1.94
61881864--61882061	71	2.8	70	91	3	258	20	28	17	33	1.95
61889377--61889563	71	2.7	68	93	5	281	18	28	18	34	1.95
61889400--61889563	71	2.3	71	100	0	328	18	28	17	35	1.94
61889400--61889597	71	2.8	70	91	3	258	20	28	17	33	1.95
61894901--61895010	40	2.8	40	85	0	148	26	23	26	23	2.00
61894901--61895050	40	3.8	39	80	7	133	26	22	26	24	2.00
61902945--61903056	40	2.8	39	84	8	129	25	23	27	23	2.00
61905429--61905477	11	4.5	11	89	0	71	71	4	6	18	1.23
61906525--61906581	30	2.0	28	86	6	78	52	3	29	14	1.58
61913482--61913589	31	3.5	31	96	0	189	26	25	17	30	1.97
61913613--61913703	42	2.2	42	89	0	137	35	20	14	29	1.92
61914230--61914359	27	4.8	27	78	5	120	29	7	20	42	1.80
61914233--61914363	54	2.4	54	80	2	138	29	7	20	41	1.80
61914410--61914501	27	3.4	27	82	11	116	41	6	23	28	1.79
61914480--61914702	27	8.2	26	75	10	83	31	9	21	36	1.86
61914539--61914607	27	2.5	28	78	7	86	30	10	18	40	1.84
61914589--61914691	54	1.9	54	83	0	134	35	8	23	32	1.85
61916915--61916992	30	2.5	31	89	4	131	25	26	16	30	1.97
61917016--61917107	42	2.2	42	86	3	123	35	21	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61917240--61917307	25	2.8	25	84	6	95	27	23	20	27	1.99
61917267--61917349	41	2.0	42	95	2	150	27	24	18	30	1.98
61917308--61917365	26	2.2	26	90	0	89	25	24	18	31	1.98
61917416--61917481	20	3.3	20	80	4	80	31	16	9	42	1.80
61917448--61917491	18	2.7	16	82	10	54	38	18	4	38	1.71
61917517--61917562	25	1.9	25	86	8	69	26	13	23	36	1.91
61918279--61918414	27	5.1	26	77	6	119	31	8	19	39	1.83
61918459--61918740	27	10.4	27	78	7	160	35	7	23	33	1.83
61918459--61918740	54	5.2	53	74	8	183	35	7	23	33	1.83
61918539--61918660	28	4.4	27	79	12	108	31	8	22	38	1.83
61918527--61918660	55	2.4	54	79	8	146	31	8	20	38	1.84
61921242--61921377	26	5.4	25	83	5	159	27	22	20	29	1.99
61921242--61921377	52	2.7	50	86	7	186	27	22	20	29	1.99
61921427--61921477	20	2.5	21	79	17	63	31	17	9	41	1.82
61921460--61921503	18	2.7	16	82	10	54	38	18	4	38	1.71
61922295--61922680	27	14.3	27	73	6	93	31	8	21	38	1.84
61922315--61922447	27	5.0	26	75	9	124	30	6	20	42	1.78
61922298--61922447	54	2.8	53	78	8	133	28	6	22	42	1.78
61922326--61922480	80	1.9	81	83	8	201	27	9	20	42	1.82
61922335--61922516	80	2.3	80	78	7	192	29	8	22	39	1.84
61922548--61922680	55	2.4	54	80	3	149	32	8	20	39	1.82
61922593--61922666	28	2.7	27	89	2	112	33	6	17	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61922659--61922753	27	3.5	27	88	0	136	37	7	23	31	1.82
61922659--61922778	54	2.2	53	83	1	159	35	6	25	33	1.82
61924982--61925090	31	3.5	31	93	2	184	26	24	18	30	1.98
61925340--61925474	51	2.7	51	90	6	213	27	23	20	28	1.99
61925340--61925474	25	5.3	26	89	4	190	27	23	20	28	1.99
61925524--61925590	20	3.3	20	89	4	100	31	17	10	40	1.84
61926416--61926776	54	6.6	54	73	7	239	32	7	21	38	1.82
61926416--61926778	27	13.4	27	76	9	202	32	7	20	38	1.81
61926645--61926778	55	2.4	54	81	6	162	31	7	20	40	1.80
61926757--61926858	27	3.8	27	85	1	134	37	9	22	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328