genome.fa.s7.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  207  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62144980--62145151	93	1.8	93	96	0	317	27	30	22	20	1.98
62144972--62145147	46	3.8	46	81	10	232	28	29	21	20	1.98
62152090--62152256	40	4.2	40	78	9	146	26	21	26	25	1.99
62158881--62159079	45	4.6	42	78	9	138	22	27	22	27	1.99
62158921--62159080	45	3.6	45	84	4	202	21	28	23	26	1.99
62166609--62166763	40	3.9	40	82	8	190	21	29	25	23	1.99
62170208--62170336	29	4.5	28	85	8	172	31	16	25	27	1.96
62170179--62170336	28	5.5	29	81	9	180	30	15	25	27	1.96
62170179--62170336	57	2.8	57	94	0	262	30	15	25	27	1.96
62175084--62175263	40	4.5	40	88	5	215	25	22	27	25	2.00
62182739--62182948	40	5.2	40	87	2	305	25	24	28	21	1.99
62184052--62184218	40	4.2	40	79	6	169	26	22	26	24	2.00
62191179--62191227	17	2.8	18	74	22	50	24	18	22	34	1.96
62192044--62192194	40	3.8	40	79	6	155	26	23	27	23	2.00
62192080--62192210	40	3.3	40	79	4	149	24	22	26	25	2.00
62194087--62194294	40	5.2	40	81	2	193	25	23	25	25	2.00
62194089--62194294	80	2.6	80	82	3	227	25	23	26	25	2.00
62199139--62199202	28	2.3	28	86	0	92	32	25	18	23	1.97
62199348--62199447	27	3.8	27	80	5	98	35	22	24	19	1.96
62199595--62199755	27	6.0	27	91	0	232	24	21	20	32	1.97
62203937--62203994	15	3.9	16	67	28	56	22	20	0	56	1.42
62203922--62204007	43	2.0	43	90	0	136	25	20	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62208709--62208835	28	4.5	28	91	3	175	31	26	14	27	1.95
62210711--62210738	2	14.0	2	100	0	56	50	0	0	50	1.00
62211942--62212229	48	6.0	48	94	0	504	34	6	27	31	1.82
62212274--62212359	37	2.3	37	95	0	154	23	18	33	24	1.97
62213137--62213176	19	2.1	19	85	0	53	2	22	0	75	0.93
62213423--62213473	25	2.0	25	100	0	102	37	7	11	43	1.71
62216754--62216950	55	3.6	54	78	2	207	37	20	22	19	1.94
62227195--62227250	29	1.9	29	92	0	94	60	16	17	5	1.53
62229978--62230027	17	2.9	18	85	14	70	76	2	18	4	1.04
62230422--62230468	24	2.0	23	88	8	69	40	0	0	59	0.97
62234185--62234212	2	14.0	2	100	0	56	50	0	0	50	1.00
62241207--62241370	71	2.3	71	100	0	328	18	28	17	35	1.94
62241207--62241404	71	2.8	70	91	3	258	20	28	17	33	1.95
62248794--62248957	71	2.3	71	100	0	328	18	28	17	35	1.94
62248794--62248991	71	2.8	70	91	3	258	20	28	17	33	1.95
62255020--62255050	15	2.1	15	100	0	62	74	12	6	6	1.21
62258905--62259080	46	3.8	46	79	12	207	20	20	29	29	1.98
62258902--62259071	93	1.8	93	96	0	313	21	21	29	28	1.98
62267532--62267632	44	2.3	43	83	9	118	22	26	23	26	2.00
62267987--62268194	43	4.6	43	81	11	236	28	33	25	12	1.92
62268002--62268148	50	3.0	49	77	16	171	28	35	25	10	1.89
62268052--62268215	43	3.8	43	82	6	188	29	32	23	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62269059--62269231	58	3.0	58	94	5	307	35	18	3	42	1.67
62270950--62271099	40	3.8	40	75	11	139	25	23	28	23	2.00
62270949--62271095	78	1.9	80	82	5	192	24	23	27	23	2.00
62271030--62271164	39	3.5	39	77	12	109	23	24	28	23	2.00
62270950--62271129	40	4.6	39	75	12	111	24	24	27	23	2.00
62282965--62283021	27	2.1	27	83	6	71	31	12	24	31	1.92
62294537--62294571	2	17.0	2	94	5	61	48	0	2	48	1.16
62296168--62296213	17	2.7	18	76	10	51	39	17	19	23	1.92
62299524--62299553	3	10.0	3	100	0	60	33	0	0	66	0.92
62308088--62308136	11	4.4	11	76	23	57	38	0	16	44	1.48
62312949--62313202	53	4.8	54	79	13	223	35	16	24	22	1.95
62312958--62313155	108	1.8	108	86	6	285	34	16	24	24	1.95
62313398--62313428	16	1.9	16	93	0	53	41	0	22	35	1.54
62317032--62317201	40	4.2	40	85	3	225	21	28	24	25	1.99
62325129--62325298	40	4.2	40	85	3	225	21	28	24	25	1.99
62335246--62335285	20	2.0	20	85	5	53	50	5	15	30	1.65
62338630--62338872	100	2.4	98	85	2	324	25	18	27	28	1.98
62338627--62338872	49	4.9	50	83	2	307	25	18	27	28	1.98
62347894--62347997	29	3.6	28	84	5	127	27	25	16	30	1.96
62360792--62360827	17	2.1	17	100	0	72	41	11	25	22	1.86
62363081--62363252	37	4.7	36	77	7	175	40	26	13	18	1.88
62363087--62363231	74	2.0	74	84	2	193	40	27	12	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62369493--62369633	43	3.3	43	79	7	151	23	17	29	29	1.97
62369715--62369772	31	1.9	30	92	3	98	62	18	8	10	1.53
62375399--62375470	35	2.1	35	100	0	144	19	26	16	37	1.93
62375556--62375892	9	37.7	9	88	1	401	31	0	24	43	1.57
62378690--62378722	11	3.0	11	100	0	66	63	0	0	36	0.95
62385251--62385351	28	3.5	28	86	6	114	29	26	13	29	1.94
62389655--62389721	29	2.3	28	82	7	89	56	0	0	43	0.99
62389717--62389841	19	6.3	19	74	13	110	52	6	0	40	1.32
62389739--62389842	39	2.7	39	98	0	199	54	5	0	38	1.31
62389755--62389842	11	6.8	12	73	21	72	56	4	0	38	1.20
62389658--62389842	15	13.2	14	69	17	82	53	4	0	41	1.25
62393539--62393699	75	2.2	74	81	9	179	28	15	19	36	1.93
62393476--62393832	188	1.9	187	82	5	443	29	16	19	35	1.94
62394310--62394363	21	2.6	21	87	0	81	20	0	25	53	1.45
62394302--62394527	21	10.2	21	66	20	70	25	1	23	49	1.60
62396461--62396540	42	1.9	42	89	0	124	22	35	22	20	1.96
62408335--62408401	30	2.2	30	91	0	116	34	16	25	23	1.95
62408381--62408511	46	2.8	46	86	2	165	42	13	22	20	1.87
62408300--62408447	76	1.9	76	88	0	224	37	13	25	24	1.92
62410758--62410976	40	5.5	40	92	2	345	25	27	23	23	2.00
62413570--62413696	40	3.2	40	82	3	141	26	22	27	23	1.99
62421271--62421489	123	1.8	120	82	5	278	31	11	23	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62421448--62421598	40	3.8	40	77	11	141	26	24	27	21	2.00
62421485--62421614	40	3.2	40	79	2	154	23	23	28	23	2.00
62421447--62421614	80	2.1	80	82	6	207	26	23	27	22	2.00
62425825--62425874	16	3.3	15	78	15	59	74	0	18	8	1.06
62425908--62425946	19	2.0	20	90	5	62	71	0	28	0	0.86
62427908--62427974	30	2.2	30	91	0	116	34	16	25	23	1.95
62427954--62428084	46	2.8	46	84	2	165	41	13	24	20	1.89
62427873--62428020	76	1.9	76	90	0	233	36	13	25	24	1.92
62444591--62444863	47	5.9	47	86	8	355	28	31	8	32	1.87
62444641--62444719	25	3.3	25	66	16	67	31	30	5	32	1.79
62444741--62444823	40	2.1	40	100	0	166	27	28	9	33	1.88
62444694--62444863	87	1.9	89	92	6	290	29	30	8	32	1.86
62447689--62447910	40	5.6	40	88	1	313	23	23	26	26	2.00
62451442--62451546	27	3.9	27	84	3	97	39	17	10	33	1.84
62451481--62451556	27	2.8	26	84	4	80	40	19	9	30	1.83
62451541--62451602	27	2.3	27	88	0	88	35	29	6	29	1.82
62451552--62451619	27	2.5	27	95	0	118	26	32	5	35	1.81
62451552--62451746	54	3.4	54	74	14	156	28	24	7	38	1.83
62451576--62451657	38	2.2	38	84	0	101	23	30	7	39	1.82
62451611--62451746	27	5.0	27	84	0	146	28	21	8	41	1.83
62451552--62451674	65	1.9	65	86	0	174	26	29	8	36	1.85
62451614--62451748	54	2.5	54	86	0	180	29	20	8	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62451725--62451946	27	8.1	27	76	7	146	40	18	9	31	1.83
62451725--62451862	54	2.6	54	83	4	188	39	20	8	31	1.83
62451899--62451954	27	2.1	26	87	9	78	39	10	10	39	1.75
62452006--62452073	27	2.5	27	90	4	102	33	19	25	22	1.97
62453313--62453368	11	5.5	11	71	16	57	35	12	19	32	1.89
62453302--62453368	20	3.3	20	93	0	116	34	11	20	32	1.90
62453417--62453584	24	7.0	24	83	4	207	30	21	22	26	1.99
62453419--62453584	47	3.5	46	84	5	199	29	21	22	26	1.99
62453418--62453569	71	2.1	71	91	1	241	30	21	22	26	1.99
62453776--62453839	31	2.1	31	87	0	92	40	14	23	21	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328