genome.fa.s7.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  163  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47803214--47803256	16	2.7	16	85	0	59	11	18	18	51	1.76
47806861--47806940	29	2.8	28	83	7	99	26	33	16	23	1.95
47811351--47811411	28	2.1	29	90	3	97	26	13	31	29	1.93
47819039--47819156	41	3.1	41	60	28	98	32	17	28	21	1.96
47819007--47819170	71	2.3	71	100	0	328	35	17	28	18	1.94
47822889--47823272	50	7.7	50	79	5	382	30	25	17	26	1.97
47826815--47827101	40	7.2	39	85	4	303	24	23	26	25	2.00
47826811--47827101	80	3.7	79	82	5	336	25	23	26	25	2.00
47831935--47832000	27	2.5	27	80	9	73	19	19	21	39	1.93
47836910--47836985	22	3.3	22	66	28	59	35	11	27	25	1.91
47836790--47837022	94	2.5	95	86	3	319	34	10	28	25	1.90
47836790--47836988	47	4.2	47	90	1	317	35	11	27	26	1.90
47837002--47837092	46	2.0	46	86	0	128	34	6	31	27	1.83
47838072--47838193	63	1.9	63	86	0	172	16	22	28	32	1.95
47843023--47843206	40	4.6	39	75	6	138	26	23	27	22	2.00
47843063--47843251	80	2.4	81	77	4	186	23	24	29	22	1.99
47851148--47851331	40	4.6	39	75	6	138	26	23	27	22	2.00
47851188--47851376	80	2.4	81	77	4	186	23	24	29	22	1.99
47857779--47857862	43	2.0	43	85	4	116	25	19	28	27	1.98
47867674--47867704	2	15.5	2	100	0	62	51	0	0	48	1.00
47869709--47869767	30	2.0	30	82	0	73	27	23	10	38	1.87
47871118--47871151	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47885366--47885403	20	1.9	20	88	0	58	34	2	10	52	1.50
47893345--47893382	20	1.9	20	88	0	58	34	2	10	52	1.50
47911496--47911670	54	3.2	54	78	1	199	36	20	12	31	1.89
47911496--47911667	27	6.4	27	78	4	150	36	20	12	31	1.89
47912116--47912178	27	2.3	27	83	0	81	19	20	20	39	1.92
47912943--47912967	10	2.5	10	100	0	50	16	12	52	20	1.75
47913139--47913198	27	2.2	27	82	11	70	36	16	16	30	1.91
47913205--47913282	27	2.9	27	80	3	86	37	19	10	33	1.85
47913239--47913322	27	3.1	27	77	3	89	42	19	11	26	1.85
47913752--47913820	27	2.6	27	74	4	77	20	15	20	43	1.88
47914778--47914830	27	2.0	27	85	7	72	35	16	16	30	1.92
47914793--47914949	27	5.8	27	77	4	111	36	17	10	34	1.85
47914796--47914949	54	2.8	53	74	6	148	37	18	10	33	1.85
47914905--47914964	27	2.2	27	81	3	66	41	16	13	28	1.86
47915379--47915460	27	3.0	27	73	7	78	21	18	18	41	1.90
47916434--47916491	27	2.1	27	81	6	64	34	15	12	37	1.85
47917039--47917101	27	2.3	27	83	0	81	19	20	20	39	1.92
47918074--47918203	27	4.8	27	74	12	90	38	18	11	31	1.86
47918057--47918232	54	3.3	54	70	13	148	37	21	12	28	1.90
47918134--47918243	27	4.1	27	76	6	82	40	19	12	28	1.88
47918676--47918741	27	2.4	27	79	0	78	22	19	15	42	1.88
47919894--47919954	22	2.8	22	79	0	68	18	16	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47919989--47920045	27	2.1	27	83	0	69	22	15	17	43	1.87
47920960--47921108	37	4.0	37	91	0	226	27	30	17	24	1.97
47921229--47921677	48	9.3	48	94	0	763	30	27	6	35	1.81
47926130--47926432	24	12.6	24	96	0	534	36	25	17	20	1.94
47935341--47935516	46	3.8	46	80	12	225	21	21	28	28	1.98
47935337--47935508	93	1.8	93	96	0	317	20	21	29	27	1.98
47938464--47938542	15	5.4	15	77	10	83	10	17	13	58	1.63
47938455--47938541	29	3.0	29	81	8	95	10	17	16	56	1.67
47940886--47941061	46	3.8	46	80	12	225	21	21	28	28	1.98
47940882--47941053	93	1.8	93	96	0	317	20	21	29	27	1.98
47942440--47942646	24	8.6	24	97	0	351	37	24	17	20	1.94
47948554--47948813	40	6.6	40	73	11	160	27	22	25	24	2.00
47948554--47948841	80	3.6	80	85	4	253	27	22	25	24	2.00
47948697--47948850	77	2.0	77	100	0	308	28	22	24	24	1.99
47948674--47948834	40	4.1	40	71	6	132	27	24	25	22	2.00
47956497--47956676	40	4.5	40	82	7	197	26	23	25	24	2.00
47956499--47956676	80	2.2	80	84	4	234	25	24	25	24	2.00
47956619--47956702	40	2.1	40	82	4	98	26	27	26	20	1.99
47956533--47956702	79	2.1	78	79	4	178	27	24	24	22	2.00
47959167--47959262	44	2.2	44	85	10	126	32	23	12	31	1.92
47963058--47963117	31	2.0	30	83	9	77	36	0	18	45	1.50
47963152--47963226	33	2.3	33	86	6	100	38	18	24	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969662--47969730	21	3.1	21	62	18	50	27	13	20	39	1.89
47971114--47971144	13	2.4	13	94	0	53	6	25	29	38	1.81
47983531--47983591	31	2.0	31	86	0	86	26	19	14	39	1.90
47983802--47983923	23	5.2	24	89	3	178	30	20	19	29	1.97
47983802--47983921	47	2.6	47	89	4	172	30	20	20	28	1.97
47983973--47984029	11	5.5	11	70	16	50	35	19	10	35	1.86
47983973--47984031	20	3.0	20	87	0	91	35	20	10	33	1.86
47986860--47987022	43	3.8	43	83	5	188	30	23	15	30	1.96
47986860--47987017	86	1.8	85	85	4	219	30	23	16	29	1.96
47993888--47993974	42	2.1	42	91	0	138	22	29	21	25	1.99
48001851--48001891	13	3.0	14	75	17	50	70	0	7	21	1.11
48010163--48010295	46	2.9	47	85	5	191	21	21	24	33	1.97
48041776--48041808	2	16.5	2	100	0	66	48	0	0	51	1.00
48051696--48051887	40	4.8	39	82	5	163	23	22	28	24	1.99
48051696--48051887	79	2.4	81	83	6	232	23	22	28	24	1.99
48051696--48051913	79	2.7	77	80	8	206	24	22	27	25	2.00
48059707--48059898	40	4.8	39	82	5	163	23	22	28	24	1.99
48059707--48059898	79	2.4	81	83	6	232	23	22	28	24	1.99
48059707--48059924	79	2.7	77	80	8	206	24	22	27	25	2.00
48061282--48061371	33	2.7	33	91	0	135	25	21	21	32	1.98
48075157--48075446	50	5.8	50	75	6	228	25	17	26	30	1.97
48075640--48075669	16	1.9	15	93	6	51	43	0	23	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48077742--48077822	32	2.5	32	76	7	92	35	20	19	23	1.96
48077804--48077899	27	3.6	27	68	10	70	41	14	19	23	1.89
48078202--48078235	14	2.4	14	85	0	50	41	29	8	20	1.82
48078303--48078382	27	3.0	27	90	0	133	35	8	17	38	1.81
48080671--48080848	27	6.6	25	71	15	99	41	24	7	26	1.81
48080695--48080876	54	3.4	54	79	1	186	41	23	7	28	1.81
48080721--48080875	81	1.9	81	85	5	215	42	22	6	28	1.78
48080695--48080875	27	6.7	27	78	2	166	41	23	7	28	1.80
48080860--48081108	27	9.3	27	89	0	356	32	19	22	25	1.97
48080803--48081106	81	3.8	79	81	7	297	34	19	19	26	1.95
48081535--48081599	22	3.0	22	80	8	78	20	23	23	33	1.97
48081758--48081859	27	3.8	26	85	5	105	18	23	21	36	1.95
48081991--48082061	31	2.3	31	95	0	124	18	14	15	52	1.75
48081991--48082072	6	13.3	6	73	19	62	18	14	15	51	1.77
48081994--48082063	25	2.8	24	85	8	79	17	15	15	51	1.77
48081991--48082070	31	2.6	31	90	4	108	17	15	16	51	1.77
48088469--48088638	93	1.8	93	96	0	313	27	28	22	20	1.99
48088461--48088636	46	3.8	46	81	10	232	28	28	22	20	1.98
48091212--48091244	14	2.5	14	90	9	52	24	6	27	42	1.78
48091209--48091452	50	4.9	50	76	3	231	26	16	25	31	1.97
48091650--48091679	16	1.9	15	93	6	51	43	0	23	33	1.54
48094029--48094152	42	2.9	42	80	8	117	31	24	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48094010--48094166	44	3.7	43	77	9	160	30	23	18	27	1.98
48097624--48097663	21	1.9	21	85	10	55	52	5	0	42	1.23
48097606--48097653	24	1.9	26	83	8	64	50	8	0	41	1.33
48098290--48098335	23	2.0	23	91	0	74	43	23	4	28	1.73
48102175--48102208	6	5.7	6	96	0	59	32	29	2	35	1.73
48105537--48105641	43	2.5	42	82	4	140	29	16	24	29	1.96
48112431--48112644	46	4.6	46	78	9	188	21	29	20	28	1.98
48112478--48112648	94	1.8	92	85	9	240	21	29	19	28	1.98
48112988--48113045	30	1.9	30	92	0	98	27	25	13	32	1.94
48114428--48114453	10	2.6	10	100	0	52	76	7	0	15	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328