genome.fa.s7.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  110  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30966820--30966855	16	2.2	16	95	0	63	50	5	13	30	1.65
30972097--30972157	30	2.0	30	83	0	77	31	22	8	37	1.84
30973980--30974058	21	3.9	21	78	3	81	39	20	27	12	1.89
30974748--30974805	26	2.2	26	93	0	98	34	5	24	36	1.78
30981149--30981274	39	3.2	39	93	0	198	20	21	30	27	1.98
30981149--30981344	39	5.0	39	85	3	191	20	21	29	28	1.98
30982897--30982952	14	4.0	13	78	19	51	66	0	1	32	1.03
30982988--30983027	17	2.2	18	91	8	64	65	5	2	27	1.27
30983211--30983253	20	2.2	20	87	8	61	51	2	6	39	1.42
30990980--30991030	2	25.5	2	100	0	102	49	0	0	50	1.00
30992762--30992822	25	2.3	27	86	8	90	42	11	3	42	1.57
30998117--30998171	12	4.4	12	71	24	51	69	1	3	25	1.15
30998121--30998194	37	2.0	38	86	7	107	64	2	4	28	1.25
31002340--31002369	2	15.0	2	100	0	60	50	0	0	50	1.00
31010222--31010281	31	1.9	31	93	0	102	31	25	8	35	1.85
31022723--31022755	12	2.8	12	95	0	57	33	3	0	63	1.10
31023011--31023224	112	1.9	113	82	3	270	28	14	14	41	1.86
31025017--31025151	69	2.0	69	93	0	234	40	14	11	33	1.82
31026170--31026196	6	4.5	6	100	0	54	85	0	0	14	0.61
31027760--31027887	47	2.7	47	85	0	157	32	28	14	24	1.94
31035350--31035388	6	6.5	6	90	0	60	51	0	2	46	1.14
31035745--31035795	19	2.8	18	81	16	61	25	1	3	68	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31038074--31038149	15	5.3	15	84	9	113	23	14	27	34	1.94
31038076--31038188	29	4.0	29	81	6	115	25	19	24	30	1.98
31038206--31038332	22	5.7	22	70	10	78	35	12	17	34	1.87
31038207--31038337	68	1.9	67	84	1	172	35	12	16	35	1.86
31038509--31038587	27	2.9	27	81	10	90	26	20	26	26	1.99
31040513--31040543	16	1.9	16	93	0	53	29	0	16	54	1.42
31041130--31041218	33	2.7	33	78	0	97	30	17	26	24	1.98
31041091--31041288	103	1.9	102	88	0	288	34	17	23	24	1.95
31041107--31041321	103	2.1	102	80	3	243	34	18	24	22	1.96
31042328--31042376	21	2.3	21	85	0	62	18	32	32	16	1.93
31042437--31042501	29	2.2	29	83	0	76	38	18	7	35	1.80
31044208--31044249	9	4.6	9	82	5	57	33	2	21	42	1.66
31044767--31044895	44	3.0	43	74	16	124	25	17	25	31	1.97
31047534--31047619	41	2.1	41	97	0	163	34	27	16	20	1.94
31054227--31054253	4	6.8	4	100	0	54	74	0	0	25	0.83
31058308--31058341	15	2.1	17	89	10	54	17	5	2	73	1.16
31060857--31060916	25	2.4	25	97	0	111	38	16	16	28	1.91
31065081--31065155	37	2.0	37	94	0	132	52	6	2	38	1.42
31065322--31065371	23	2.2	23	96	0	91	38	8	20	34	1.82
31065958--31065998	7	5.9	7	100	0	82	58	0	14	26	1.37
31066724--31066765	15	2.9	15	80	16	52	45	2	21	30	1.65
31079652--31079697	23	2.0	23	84	12	60	45	10	6	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31079659--31079703	23	2.0	23	82	8	56	40	13	8	37	1.76
31089860--31089936	38	2.0	38	94	0	136	25	5	23	45	1.73
31095021--31095059	20	2.0	20	85	10	53	33	0	35	30	1.58
31098741--31098912	85	2.0	85	100	0	344	26	25	5	41	1.78
31099900--31099937	15	2.5	15	100	0	76	21	23	36	18	1.95
31100274--31100308	11	3.3	11	88	4	54	68	22	0	8	1.16
31102420--31102497	39	2.0	39	94	0	138	16	32	14	37	1.89
31104554--31104591	18	2.1	18	90	9	60	42	0	21	36	1.53
31106390--31106489	24	4.0	24	85	12	130	39	16	21	24	1.92
31106390--31106501	24	4.3	27	80	15	121	38	15	23	23	1.92
31106390--31106501	52	2.2	52	88	6	165	38	15	23	23	1.92
31114839--31114876	14	2.9	13	81	11	51	18	13	10	57	1.63
31125273--31125424	24	6.0	24	83	11	196	38	16	21	23	1.92
31125262--31125436	52	3.4	52	95	1	298	36	15	24	24	1.94
31125460--31125709	51	4.9	51	94	1	394	32	13	25	28	1.94
31129166--31129331	42	3.9	42	73	7	111	31	24	16	28	1.96
31137541--31137570	14	2.1	14	93	0	51	16	0	36	46	1.47
31146454--31146573	57	2.1	58	82	1	152	29	15	5	49	1.68
31147428--31147467	21	1.9	21	89	0	62	27	5	7	60	1.45
31153707--31153772	29	2.3	28	84	2	87	21	15	16	46	1.83
31153707--31153780	28	2.6	29	84	2	96	22	13	16	47	1.81
31154129--31154170	21	2.0	21	95	0	75	42	11	35	9	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31157898--31157944	24	2.0	24	84	16	62	51	17	0	31	1.46
31170483--31170508	2	13.0	2	100	0	52	50	0	0	50	1.00
31175661--31175719	24	2.4	24	80	8	66	52	1	0	45	1.10
31183488--31183529	13	3.5	13	81	18	54	38	50	2	9	1.48
31183610--31183659	9	5.6	9	85	0	73	28	8	20	44	1.79
31188557--31188623	34	2.0	33	88	8	100	19	26	23	29	1.98
31207689--31207726	20	1.9	20	84	10	51	50	5	0	44	1.24
31207947--31208000	16	3.5	16	70	25	53	57	0	0	42	0.98
31208116--31208175	16	3.8	16	71	4	50	36	13	31	18	1.89
31208167--31208267	31	3.3	31	75	12	82	40	16	31	10	1.83
31210256--31210316	30	2.0	30	93	0	104	37	9	18	34	1.83
31212114--31212194	39	2.1	39	95	4	146	58	7	4	29	1.47
31212400--31212428	14	2.1	14	93	6	51	20	0	0	79	0.74
31213854--31213897	9	4.8	9	77	5	52	22	40	2	34	1.67
31217800--31217916	42	2.7	42	77	6	119	26	18	23	30	1.98
31217776--31217934	43	3.7	43	75	12	150	24	18	27	29	1.98
31220787--31220927	73	1.9	73	89	2	221	34	17	22	25	1.95
31224010--31224061	18	2.8	18	85	2	68	32	0	3	63	1.12
31225017--31225052	16	2.2	17	95	5	65	22	30	0	47	1.52
31225047--31225100	11	4.9	11	86	6	65	27	29	0	42	1.56
31225135--31225163	14	2.1	14	93	6	51	41	3	0	55	1.17
31226256--31226281	7	3.7	7	100	0	52	26	0	15	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31226785--31226875	30	3.0	30	83	0	119	32	40	14	12	1.83
31227395--31227514	54	2.2	54	83	5	145	41	2	9	46	1.49
31230533--31230909	124	3.0	126	92	1	623	30	18	15	36	1.92
31230744--31230790	14	3.3	15	73	11	53	36	19	6	38	1.77
31230870--31230933	28	2.3	28	86	0	83	26	15	6	51	1.67
31232452--31232528	39	2.0	39	100	0	154	28	15	19	36	1.92
31234369--31234412	2	22.0	2	95	0	79	52	47	0	0	1.00
31235380--31235406	5	5.4	5	100	0	54	0	0	37	62	0.95
31236751--31236829	39	2.0	39	97	0	149	32	3	10	53	1.53
31241411--31241574	29	5.7	29	94	0	274	29	22	15	32	1.95
31241412--31241601	87	2.2	87	86	1	256	28	25	15	29	1.96
31241412--31241601	58	3.3	58	88	1	229	28	25	15	29	1.96
31249292--31249398	29	3.7	29	89	0	151	28	24	15	30	1.96
31249294--31249425	58	2.3	58	80	2	140	28	28	16	27	1.97
31253363--31253410	25	1.9	25	86	0	69	33	25	16	25	1.96
31253454--31253512	20	3.0	20	94	0	100	35	11	22	30	1.90
31253563--31253705	24	6.0	24	90	4	200	29	22	21	26	1.99
31253563--31253705	47	3.0	47	89	5	198	29	22	21	26	1.99
31253563--31253706	71	2.0	72	87	4	211	29	22	21	26	1.99
31253895--31253960	31	2.1	31	97	0	123	39	15	22	22	1.91
31260096--31260202	29	3.7	29	91	0	142	28	23	15	31	1.96
31262408--31262812	43	9.5	43	79	3	395	32	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31262413--31262812	128	3.1	126	79	5	446	32	27	15	25	1.95
31264836--31264876	20	2.0	20	95	0	73	41	7	9	41	1.66
31268034--31268068	15	2.3	15	85	0	52	31	2	2	62	1.24
31268155--31268195	21	2.0	21	90	0	64	39	36	4	19	1.73
31268173--31268212	13	3.0	13	81	3	53	40	40	2	17	1.63
31268551--31268594	14	3.2	13	78	9	52	20	52	0	27	1.47
31268594--31268756	7	23.0	7	76	2	128	49	30	0	20	1.50
31269107--31269317	40	5.3	40	80	7	223	27	18	21	32	1.97
31269891--31270008	57	2.1	58	84	7	152	42	6	20	30	1.78
31289038--31289068	7	4.4	7	100	0	62	41	29	0	29	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328