genome.fa.s7.2.7.7.80.10.50.1000.231.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  231  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69301977--69302094	31	3.8	31	88	0	173	26	26	18	28	1.98
69302076--69302245	49	3.4	50	88	5	263	27	22	14	35	1.93
69315317--69315406	29	3.1	28	85	4	117	27	11	30	31	1.91
69323188--69323282	25	3.8	25	91	0	145	26	21	24	28	1.99
69323485--69323546	27	2.3	27	85	0	88	24	20	20	33	1.97
69326017--69326133	40	2.9	39	78	8	119	31	13	24	29	1.94
69332662--69332792	30	4.5	30	86	8	171	28	25	13	32	1.94
69332661--69332792	58	2.3	58	85	4	176	28	26	13	31	1.94
69348086--69348425	27	12.7	27	88	2	454	30	17	16	35	1.91
69348417--69348504	27	3.3	26	75	3	86	42	18	20	19	1.90
69348567--69348615	23	2.1	23	85	14	66	26	14	18	40	1.89
69348868--69348918	18	2.8	19	76	8	61	27	21	13	37	1.91
69348868--69348925	18	3.2	17	73	9	53	27	20	13	37	1.91
69348910--69348993	34	2.4	34	88	5	125	32	22	19	26	1.97
69348910--69349003	34	2.7	34	85	8	111	31	22	20	25	1.98
69376975--69377315	27	12.7	27	88	1	463	31	17	16	35	1.91
69377307--69377394	27	3.3	26	75	3	86	42	18	20	19	1.90
69377457--69377505	23	2.1	23	85	14	66	26	14	18	40	1.89
69377759--69377809	18	2.8	19	76	8	61	27	21	13	37	1.91
69377759--69377816	18	3.2	17	73	9	53	27	20	13	37	1.91
69377801--69377884	34	2.4	34	88	5	125	32	22	19	26	1.97
69377801--69377904	34	3.0	33	83	9	111	31	23	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69381396--69381460	31	2.1	31	100	0	130	35	27	6	30	1.81
69384895--69384943	21	2.4	21	80	10	57	42	2	20	34	1.64
69385337--69385457	40	3.0	40	80	0	143	27	14	20	37	1.92
69388367--69388541	40	4.4	40	85	6	205	25	28	23	23	2.00
69398546--69398621	40	1.9	40	86	0	107	17	30	18	34	1.94
69401531--69401707	40	4.4	40	87	3	216	23	23	28	24	2.00
69418289--69418343	29	1.9	28	88	3	83	34	27	21	16	1.95
69423252--69423321	28	2.5	28	95	0	131	31	27	14	27	1.95
69428266--69428415	40	3.8	39	82	1	147	26	23	26	24	2.00
69431703--69431887	6	30.8	6	74	17	154	48	12	16	21	1.80
69431703--69431887	84	2.2	84	93	1	309	48	12	16	21	1.80
69432005--69432070	27	2.5	26	85	7	87	37	22	22	16	1.93
69432005--69432078	27	2.8	27	78	13	82	36	21	24	17	1.95
69432029--69432086	27	2.1	27	84	6	73	36	27	20	15	1.93
69432392--69432468	27	2.9	26	88	3	100	35	20	23	20	1.96
69432670--69432865	27	7.3	27	81	2	223	26	19	17	36	1.94
69432672--69432865	81	2.4	81	85	1	246	26	20	17	36	1.94
69432670--69432865	54	3.6	54	84	2	250	26	19	17	36	1.94
69432870--69433252	27	14.2	27	85	4	522	40	10	22	26	1.86
69432870--69433249	81	4.7	81	91	1	591	40	10	22	26	1.86
69437442--69437511	28	2.5	28	90	4	106	32	27	12	27	1.93
69439042--69439264	48	4.6	48	90	0	320	30	25	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69438994--69439264	96	2.8	96	86	1	337	28	25	17	28	1.98
69439044--69439327	144	2.0	144	82	1	354	29	26	17	27	1.97
69441176--69441305	40	3.3	39	76	8	136	23	27	23	24	2.00
69441192--69441342	40	3.8	40	79	6	155	21	27	23	27	1.99
69441192--69441340	80	1.9	79	84	6	203	21	27	24	26	1.99
69449157--69449286	40	3.3	39	76	8	136	23	27	23	24	2.00
69449173--69449324	40	3.8	40	78	6	148	22	26	23	27	1.99
69449173--69449322	80	1.9	80	83	8	198	22	26	24	27	1.99
69455752--69455967	46	4.6	44	75	14	175	28	19	28	23	1.98
69460038--69460106	28	2.5	28	95	2	122	43	27	10	18	1.82
69464310--69464369	29	2.1	29	96	3	113	46	25	11	16	1.81
69471067--69471173	27	4.0	28	90	4	159	19	24	21	34	1.96
69473610--69473670	30	2.0	30	87	0	86	39	6	22	31	1.80
69478383--69478494	27	4.2	26	87	5	143	19	24	22	33	1.97
69478381--69478494	54	2.1	54	90	4	178	19	23	22	34	1.97
69482266--69482447	64	2.8	64	75	8	183	30	17	28	23	1.97
69497924--69498012	46	1.9	46	82	11	110	22	28	20	29	1.98
69502719--69502796	40	2.0	40	84	0	102	33	20	24	21	1.97
69510809--69510959	40	3.8	40	74	13	123	26	23	27	22	2.00
69510890--69510974	40	2.1	40	84	0	107	24	24	27	23	2.00
69516814--69516939	50	2.6	48	82	11	141	26	30	16	26	1.97
69517659--69517698	20	2.0	20	100	0	80	20	10	20	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69523914--69524067	44	3.6	44	72	12	140	31	22	20	25	1.98
69526598--69526721	52	2.4	52	97	1	230	53	9	20	16	1.71
69527864--69528120	40	6.5	40	88	4	328	21	22	29	26	1.99
69527864--69528081	120	1.8	119	91	1	364	20	23	29	26	1.99
69530098--69530145	25	1.9	25	86	0	69	33	25	16	25	1.96
69530189--69530247	20	3.0	20	92	0	100	37	11	20	30	1.89
69530298--69530416	47	2.5	48	89	8	172	27	21	24	26	1.99
69530298--69530416	24	5.0	24	84	9	154	27	21	24	26	1.99
69530608--69530671	31	2.1	31	96	0	119	39	15	21	23	1.92
69530625--69530700	38	2.0	38	97	0	143	39	14	21	25	1.91
69538397--69538444	25	1.9	25	86	0	69	33	25	16	25	1.96
69538488--69538546	20	3.0	20	92	0	100	37	11	20	30	1.89
69538597--69538715	47	2.5	48	89	8	172	27	21	24	26	1.99
69538597--69538715	24	5.0	24	84	9	154	27	21	24	26	1.99
69538907--69538970	31	2.1	31	96	0	119	39	15	21	23	1.92
69538924--69539030	38	2.8	38	92	2	180	39	14	22	23	1.91
69545405--69545564	29	5.5	29	82	4	180	26	16	31	25	1.97
69559433--69559542	40	2.8	40	85	0	148	26	23	26	23	2.00
69559433--69559582	40	3.8	39	80	7	133	26	22	26	24	2.00
69571486--69571709	40	5.7	40	91	4	359	25	27	21	25	1.99
69571453--69571705	78	3.2	79	88	5	356	24	27	22	25	2.00
69589750--69589913	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69589750--69589947	71	2.8	70	91	3	258	20	28	17	33	1.95
69597295--69597457	70	2.3	71	97	1	310	19	27	17	35	1.94
69597295--69597491	70	2.8	69	90	4	238	20	27	17	34	1.95
69600272--69600554	24	11.9	24	95	2	500	20	17	25	36	1.94
69608322--69608606	24	11.9	24	96	0	507	20	18	25	35	1.95
69610758--69610802	20	2.2	20	88	0	63	35	13	0	51	1.41
69611087--69611128	21	2.0	21	100	0	84	47	14	9	28	1.75
69619709--69619743	18	1.9	18	88	0	52	22	0	2	74	0.95
69624856--69624905	26	2.0	24	88	7	73	64	6	0	30	1.18
69624876--69624934	21	2.8	21	78	12	59	69	8	0	22	1.15
69630570--69630788	79	2.8	78	86	6	284	27	27	20	23	1.99
69630570--69630790	40	5.7	40	84	7	260	28	27	20	23	1.99
69637466--69637527	24	2.6	25	87	5	83	33	29	16	20	1.94
69637558--69637838	94	3.0	94	92	0	456	39	19	9	31	1.84
69649764--69650002	49	4.8	50	80	4	277	28	25	18	26	1.98
69649764--69650009	101	2.5	98	83	2	303	28	25	19	26	1.98
69651471--69651543	34	2.1	34	85	5	94	36	20	19	23	1.95
69653259--69653420	39	4.1	40	77	7	152	38	16	29	15	1.90
69653361--69653422	20	3.2	20	68	13	56	37	17	30	14	1.90
69660790--69660965	46	3.8	46	78	10	196	28	28	19	22	1.98
69660798--69660969	93	1.8	93	92	0	290	27	29	20	22	1.98
69660841--69660984	46	3.1	44	70	21	107	29	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69665771--69665926	27	5.8	27	80	3	179	31	20	7	41	1.79
69665771--69665925	54	2.9	55	83	4	208	30	20	7	41	1.79
69665775--69665924	81	1.9	81	90	2	239	32	19	7	41	1.79
69665765--69665953	54	3.5	52	75	7	146	33	20	6	39	1.79
69665750--69665951	81	2.5	81	81	2	235	34	20	6	39	1.78
69665917--69666056	27	5.2	27	82	3	165	42	20	7	30	1.80
69665917--69666056	54	2.6	54	86	2	183	42	20	7	30	1.80
69665917--69666094	81	2.2	80	84	3	223	41	20	9	28	1.83
69665969--69666070	27	3.8	26	77	14	100	40	20	8	30	1.83
69666059--69666302	27	9.0	27	87	0	335	35	18	21	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328