genome.fa.s7.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  149  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43536667--43536745	27	3.0	27	83	12	101	21	2	1	74	1.01
43539138--43539193	28	2.0	28	89	0	85	48	10	5	35	1.61
43539768--43539973	55	3.8	54	80	3	229	21	21	17	38	1.93
43539778--43539973	109	1.8	107	84	4	268	20	21	18	39	1.93
43543413--43543449	10	3.5	11	89	7	51	62	2	0	35	1.10
43543957--43544217	93	2.8	93	89	1	423	23	15	28	32	1.95
43544867--43544925	10	5.9	10	78	7	66	22	8	1	67	1.26
43544884--43544925	14	2.8	15	78	7	50	23	4	2	69	1.20
43545982--43546052	24	3.0	24	87	0	106	38	0	35	26	1.57
43547458--43547569	27	4.1	27	83	3	136	16	23	23	36	1.94
43547458--43547569	54	2.1	54	86	3	154	16	23	23	36	1.94
43548623--43548656	10	3.3	10	84	8	50	29	8	8	52	1.62
43549961--43549991	13	2.4	13	100	0	62	9	25	58	6	1.54
43555539--43555657	47	2.5	48	95	2	213	31	8	29	31	1.87
43557008--43557135	40	3.2	40	80	2	150	23	28	24	24	2.00
43558863--43559096	49	4.9	48	90	3	316	31	7	31	29	1.85
43558863--43559096	96	2.5	93	86	5	310	31	7	31	29	1.85
43561476--43561546	24	3.0	24	93	0	115	35	1	36	26	1.66
43562963--43563067	27	3.9	26	76	8	95	18	21	22	37	1.94
43565460--43565490	12	2.6	12	94	0	53	6	38	19	35	1.77
43573843--43573907	26	2.6	26	77	18	66	38	6	3	52	1.42
43575027--43575293	43	6.4	43	76	11	261	31	28	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43575051--43575293	120	2.0	123	83	4	305	31	29	13	26	1.94
43577529--43577560	14	2.3	14	100	0	64	37	0	12	50	1.41
43579006--43579115	41	2.7	41	87	2	141	30	24	10	34	1.90
43579945--43579991	21	2.2	21	88	0	67	44	36	4	14	1.65
43580042--43580066	4	6.2	4	100	0	50	24	0	0	76	0.80
43580347--43580499	7	21.4	7	73	11	51	41	37	0	20	1.52
43580358--43580399	14	2.9	14	89	3	57	23	54	0	21	1.44
43580346--43580400	22	2.5	22	79	8	76	32	47	0	20	1.50
43580388--43580499	14	7.9	14	68	13	77	47	33	0	19	1.50
43580388--43580495	7	15.3	7	73	9	67	47	33	0	19	1.50
43580388--43580495	21	5.1	21	68	10	76	47	33	0	19	1.50
43580806--43580989	40	4.6	40	81	8	194	29	23	17	28	1.97
43580806--43580989	81	2.3	80	78	6	201	29	23	17	28	1.97
43580960--43581138	75	2.4	75	91	0	277	31	22	16	29	1.96
43581459--43581514	28	2.0	28	92	0	94	14	17	17	50	1.79
43582034--43582072	20	2.0	20	90	10	62	66	0	7	25	1.18
43592559--43592588	15	1.9	16	93	6	53	10	36	0	53	1.35
43592559--43592588	8	3.9	8	91	8	53	10	36	0	53	1.35
43592606--43592685	31	2.6	30	77	13	83	10	5	10	75	1.19
43594268--43594319	19	2.8	19	85	2	70	21	1	3	73	1.10
43598087--43598128	21	2.0	21	90	0	66	45	16	7	30	1.74
43600116--43600156	18	2.3	17	84	12	55	21	41	0	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43608489--43608583	40	2.4	40	87	0	127	38	22	20	18	1.93
43608751--43608843	41	2.3	40	83	5	107	26	15	23	34	1.94
43609199--43609237	15	2.6	15	91	0	69	17	0	41	41	1.50
43609272--43609371	15	6.6	15	76	10	80	24	1	41	34	1.62
43609283--43609371	7	12.0	7	74	11	79	24	0	41	33	1.55
43609283--43609355	22	3.3	22	84	5	94	24	0	42	32	1.55
43609300--43609385	38	2.3	37	88	6	120	26	1	43	29	1.63
43609477--43609518	22	1.9	22	90	9	68	28	0	35	35	1.58
43609689--43609780	26	3.5	26	91	4	150	43	7	5	43	1.56
43612705--43612793	44	2.0	44	100	0	178	43	17	8	29	1.80
43613688--43613781	19	4.8	20	68	5	75	41	1	3	54	1.23
43613706--43613804	15	7.0	15	67	20	52	44	0	2	53	1.12
43613726--43613781	24	2.3	24	78	6	60	42	0	3	53	1.18
43613688--43613782	39	2.4	39	96	0	172	41	1	3	54	1.23
43613688--43613786	20	5.1	20	69	9	78	40	1	3	55	1.22
43613748--43613814	29	2.3	28	87	7	98	44	0	0	55	0.99
43614083--43614151	9	7.7	9	88	0	93	44	21	4	28	1.71
43619038--43619066	14	2.1	14	93	6	51	34	0	10	55	1.34
43621901--43621952	25	2.1	25	81	0	59	50	0	5	44	1.26
43622392--43622416	7	3.6	7	100	0	50	16	52	0	32	1.44
43631245--43631291	23	2.0	23	100	0	94	29	12	27	29	1.93
43635525--43635553	9	3.3	9	90	9	51	34	24	0	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43648872--43648983	46	2.4	46	83	7	129	31	21	27	19	1.97
43654579--43654717	40	3.5	40	82	7	131	25	27	21	25	1.99
43654549--43654717	80	2.1	80	79	7	175	26	26	20	27	1.99
43658017--43658069	17	3.1	17	97	0	97	16	26	22	33	1.96
43662992--43663113	47	2.6	48	81	6	142	31	17	28	22	1.97
43669123--43669241	55	2.2	55	81	4	134	15	28	30	25	1.96
43669162--43669265	55	1.9	55	87	0	154	13	27	34	24	1.93
43683271--43683330	30	2.0	30	86	0	84	30	25	6	38	1.81
43685406--43685666	45	5.7	45	76	7	229	28	21	18	31	1.97
43685312--43685666	141	2.5	140	86	4	451	28	20	18	32	1.96
43685457--43685634	96	1.9	96	84	2	241	27	21	19	32	1.97
43697696--43697735	20	2.0	20	100	0	80	60	0	10	30	1.30
43702576--43702743	40	4.2	40	80	3	196	27	26	20	24	1.99
43705369--43705594	48	4.9	47	74	8	212	28	22	20	28	1.99
43705369--43705516	47	3.1	47	81	2	172	26	22	22	27	2.00
43711959--43712032	37	2.0	37	100	0	148	24	21	27	27	1.99
43720173--43720406	23	10.1	23	93	0	396	30	21	21	26	1.98
43720457--43720523	20	3.3	20	91	0	107	32	22	11	32	1.90
43728026--43728089	31	2.1	31	90	0	101	25	23	15	35	1.94
43728304--43728440	23	6.1	23	88	7	203	29	21	21	27	1.98
43728304--43728440	64	2.0	69	89	8	212	29	21	21	27	1.98
43728490--43728556	20	3.3	20	91	0	107	32	22	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43728592--43728639	25	1.9	25	86	0	69	25	16	25	33	1.96
43734073--43734292	94	2.4	94	90	3	347	36	7	23	32	1.82
43736352--43736643	50	5.8	50	79	4	309	27	17	25	29	1.97
43736352--43736643	101	2.9	100	78	6	277	27	17	25	29	1.97
43736352--43736640	151	1.9	151	89	0	452	27	17	25	29	1.97
43736843--43736874	16	2.0	16	93	0	55	46	0	18	34	1.49
43740341--43740734	165	2.4	165	89	2	589	28	13	14	42	1.85
43740895--43741623	164	4.4	164	82	5	837	29	13	15	41	1.86
43742490--43743239	163	4.6	163	78	5	663	28	12	18	40	1.87
43742630--43743226	328	1.8	327	84	1	811	29	12	18	39	1.87
43743212--43743277	28	2.4	28	89	0	105	19	15	9	56	1.66
43744829--43744904	31	2.5	31	93	0	125	15	32	35	15	1.90
43747075--43747122	21	2.3	22	75	13	57	47	37	0	14	1.44
43747773--43747804	6	5.3	6	100	0	64	50	0	0	50	1.00
43747899--43747986	44	2.0	44	88	2	133	42	6	1	50	1.36
43750760--43750802	20	2.2	20	100	0	86	46	4	9	39	1.57
43753051--43753099	19	2.8	18	87	9	66	38	0	2	59	1.09
43753051--43753099	20	2.7	19	82	14	59	38	0	2	59	1.09
43755689--43755762	24	3.1	24	84	7	96	43	5	37	13	1.67
43757749--43757923	46	3.8	46	78	14	207	20	20	29	29	1.98
43757745--43757916	92	1.9	93	95	1	310	20	20	30	27	1.98
43761860--43762315	49	9.4	49	93	0	670	27	30	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43761860--43762315	195	2.4	194	90	4	699	27	30	8	32	1.88
43766227--43766794	141	4.0	141	86	2	736	27	17	23	31	1.97
43766227--43767019	282	2.9	279	81	6	831	27	18	23	31	1.97
43766674--43766910	126	1.9	126	85	1	332	26	17	22	32	1.96
43767019--43767117	7	14.0	7	73	10	67	20	1	31	47	1.57
43767019--43767117	21	4.7	20	80	7	81	20	1	31	47	1.57
43767053--43767103	20	2.5	21	87	3	68	19	1	31	47	1.61
43767044--43767108	34	1.9	34	84	6	87	18	1	30	49	1.57
43777127--43777167	18	2.2	19	86	4	57	12	17	12	58	1.63
43781077--43781784	35	19.4	35	74	13	193	26	20	14	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328