genome.fa.s7.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  142  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41343045--41343079	18	1.9	19	88	11	56	54	11	28	5	1.59
41344469--41344508	20	2.0	21	85	5	55	42	0	20	37	1.52
41345172--41345289	46	2.5	48	86	5	161	29	21	27	21	1.98
41345310--41345486	50	3.6	49	78	5	162	26	19	29	23	1.98
41345169--41345486	48	6.7	48	72	10	165	26	20	29	23	1.99
41345209--41345486	143	1.9	145	84	5	377	26	20	29	23	1.99
41348487--41348612	51	2.5	50	82	10	150	54	2	0	42	1.19
41362278--41362337	29	2.0	29	84	9	77	41	5	23	30	1.75
41376055--41376089	17	2.1	17	100	0	70	28	42	0	28	1.56
41376698--41376732	18	1.9	18	94	0	61	5	8	0	85	0.73
41377518--41377551	18	1.9	18	88	5	52	61	20	0	17	1.34
41378836--41378865	15	2.0	15	100	0	60	33	0	0	66	0.92
41380015--41380100	30	2.8	32	77	11	83	19	1	25	53	1.52
41380015--41380101	31	2.9	31	77	13	83	20	1	25	52	1.53
41386764--41386793	15	2.0	15	93	0	51	73	10	6	10	1.25
41393818--41393855	14	2.4	17	87	12	55	47	0	0	52	1.00
41396954--41396980	12	2.2	12	100	0	54	74	0	7	18	1.05
41397023--41397054	11	2.9	11	95	0	55	21	0	28	50	1.49
41397289--41397347	28	2.1	27	81	6	64	35	13	5	45	1.66
41416523--41416589	31	2.2	31	81	5	73	20	52	0	26	1.47
41419731--41420057	50	6.5	50	73	8	245	29	25	18	26	1.98
41419830--41420007	51	3.5	51	76	4	207	30	23	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41419731--41420062	101	3.3	101	84	4	388	29	25	18	26	1.98
41422588--41422673	42	2.0	42	97	0	163	32	25	15	26	1.95
41436020--41436142	38	3.2	38	87	0	174	31	22	21	24	1.98
41443059--41443161	37	2.8	37	90	0	161	24	31	20	24	1.98
41444707--41444871	40	4.1	40	83	7	169	24	26	21	26	2.00
41451966--41452305	27	12.6	27	86	2	432	28	22	9	40	1.84
41452014--41452349	81	4.1	81	83	1	235	28	23	8	39	1.84
41453544--41453591	25	2.0	24	83	4	60	31	25	18	25	1.98
41453630--41453686	9	5.9	9	73	15	51	35	8	21	35	1.84
41453628--41453698	20	3.5	20	94	0	124	35	11	21	32	1.89
41453639--41453693	11	5.4	11	70	16	55	36	12	20	30	1.90
41453743--41453909	24	7.0	24	86	4	223	28	23	21	25	1.99
41453743--41453910	47	3.5	48	87	4	225	29	23	21	25	1.99
41453743--41453909	71	2.3	71	90	3	255	28	23	21	25	1.99
41456784--41456968	40	4.7	40	86	6	218	25	25	22	25	2.00
41459705--41459893	29	6.5	29	84	3	229	26	30	15	26	1.96
41468234--41468419	40	4.7	40	89	5	245	26	26	21	25	1.99
41471513--41471697	40	4.7	40	87	6	227	25	26	22	25	2.00
41478658--41478843	40	4.7	41	83	10	201	25	25	22	26	2.00
41480629--41480967	48	7.1	48	91	3	540	31	27	5	35	1.81
41480629--41480967	96	3.5	96	95	0	597	31	27	5	35	1.81
41486235--41486457	49	4.7	49	73	9	167	25	28	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41486276--41486454	93	1.9	94	93	1	306	24	29	18	28	1.98
41491967--41491992	3	8.7	3	100	0	52	34	0	30	34	1.58
41493174--41493281	54	2.0	54	92	0	180	35	20	24	20	1.96
41513829--41513866	19	2.0	20	85	15	53	39	23	0	36	1.55
41514096--41514266	93	1.8	93	93	0	297	28	28	21	21	1.98
41514091--41514263	46	3.7	46	79	10	208	29	27	20	21	1.98
41521344--41521381	19	2.0	20	85	15	53	39	23	0	36	1.55
41521611--41521781	93	1.8	93	93	0	297	28	28	21	21	1.98
41521606--41521778	46	3.7	46	79	10	208	29	27	20	21	1.98
41527395--41527433	21	1.9	20	89	5	60	33	0	20	46	1.51
41527997--41528223	48	4.7	48	88	1	321	19	18	26	34	1.95
41534550--41534654	43	2.4	43	84	3	122	24	14	23	37	1.92
41534593--41534705	43	2.6	42	81	4	120	26	15	24	32	1.96
41537115--41537263	42	3.6	40	73	12	131	30	15	24	29	1.95
41544891--41545062	43	4.0	44	78	15	180	23	18	26	32	1.97
41548567--41548637	24	3.0	24	95	0	124	35	1	38	25	1.65
41548567--41548660	48	1.9	48	81	10	111	35	4	37	23	1.75
41550055--41550166	27	4.2	26	78	7	116	16	24	22	36	1.94
41550055--41550166	54	2.1	54	84	3	145	16	24	22	36	1.94
41551157--41551234	28	2.8	29	82	5	90	35	19	23	21	1.96
41551350--41551442	28	3.3	28	93	0	150	31	7	26	34	1.84
41557366--41557508	51	3.0	49	74	13	138	31	28	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41568734--41568777	6	7.0	6	82	10	52	25	0	0	75	0.81
41568742--41568771	14	2.2	13	94	5	51	23	0	0	76	0.78
41568736--41568777	20	2.2	19	91	4	66	23	0	0	76	0.79
41568975--41569052	24	3.4	23	73	21	74	64	1	1	33	1.10
41569760--41569791	8	4.0	8	100	0	64	25	0	0	75	0.81
41574224--41574265	2	21.0	2	100	0	84	50	0	0	50	1.00
41575883--41575916	15	2.3	15	100	0	68	44	8	35	11	1.72
41576256--41576309	27	2.0	27	82	7	65	35	20	25	18	1.95
41577423--41577467	2	22.5	2	100	0	90	51	0	0	48	1.00
41577660--41577705	19	2.5	18	82	3	56	63	0	8	28	1.24
41577650--41577703	28	1.9	28	84	0	72	62	1	9	25	1.35
41577669--41577704	18	1.9	19	88	5	56	63	0	11	25	1.27
41578200--41578244	22	2.1	21	84	12	56	53	4	4	37	1.41
41580368--41580400	15	2.2	15	94	0	57	69	3	6	21	1.24
41580257--41580549	90	3.3	88	83	7	330	38	18	15	27	1.91
41597497--41597619	49	2.5	49	95	1	219	61	15	0	22	1.33
41600449--41600482	16	2.1	16	94	0	59	61	0	0	38	0.96
41600562--41600600	20	2.0	20	94	0	69	61	0	0	38	0.96
41601177--41601226	19	2.5	21	84	9	61	34	0	8	58	1.28
41602007--41602043	11	3.5	11	82	14	51	54	0	0	45	1.00
41602206--41602242	10	3.7	10	89	10	58	45	0	0	54	1.00
41602212--41602245	11	3.1	11	91	8	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41602425--41602475	25	2.0	25	96	0	93	49	3	9	37	1.55
41609942--41609989	20	2.5	20	89	3	71	50	0	0	50	1.00
41610062--41610099	17	2.1	18	85	9	51	47	2	2	47	1.30
41613187--41613247	26	2.4	25	78	10	70	44	0	4	50	1.23
41613187--41613238	25	2.1	25	85	7	70	44	0	5	50	1.26
41613210--41613263	20	2.6	22	72	13	53	46	0	3	50	1.19
41617708--41617760	26	2.0	27	85	7	74	24	15	22	37	1.92
41619245--41619372	26	4.9	26	96	0	220	35	25	7	32	1.83
41621546--41622182	177	3.6	176	80	4	683	27	23	18	31	1.97
41627486--41627590	29	3.6	29	77	2	86	25	33	17	23	1.96
41627524--41627646	58	2.1	59	87	3	178	25	30	15	28	1.96
41627545--41627646	29	3.5	29	95	0	186	26	29	14	29	1.95
41635464--41635568	29	3.6	29	77	2	86	25	33	17	23	1.96
41635502--41635624	58	2.1	59	87	3	178	25	30	15	28	1.96
41635523--41635624	29	3.5	29	95	0	186	26	29	14	29	1.95
41648098--41648215	41	3.1	41	60	28	98	32	17	28	21	1.96
41648066--41648229	71	2.3	71	100	0	328	35	17	28	18	1.94
41656869--41657019	41	3.5	43	75	8	130	29	26	17	26	1.97
41656867--41657030	45	3.8	43	75	11	149	31	26	16	25	1.96
41662507--41662629	43	2.9	42	80	7	133	32	24	17	25	1.97
41662521--41662665	43	3.4	42	80	10	143	31	24	17	26	1.97
41666804--41667069	40	6.7	40	87	5	369	26	27	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41666804--41667069	120	2.2	122	91	2	441	26	27	21	24	2.00
41668152--41668185	9	3.8	9	96	0	59	44	0	32	23	1.54
41668152--41668194	18	2.5	17	85	7	52	44	0	30	25	1.55
41669080--41669120	21	2.1	19	86	9	55	36	9	0	53	1.34
41671046--41671070	10	2.5	10	100	0	50	24	36	16	24	1.94
41671989--41672051	28	2.2	28	83	5	74	23	25	19	31	1.98
41677607--41677676	27	2.5	28	95	2	124	28	14	27	30	1.95
41677607--41677688	27	3.0	27	85	8	78	29	15	24	30	1.96
41682907--41683073	40	4.2	40	81	2	167	23	26	22	26	2.00
41682923--41683073	80	1.9	79	83	6	198	23	27	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328