genome.fa.s7.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  150  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43781066--43781793	38	19.9	37	76	11	463	26	20	14	38	1.91
43781075--43781793	73	9.8	73	74	11	446	26	20	14	39	1.91
43781118--43781793	148	4.6	147	76	10	444	26	19	14	39	1.90
43781241--43781792	110	5.0	111	77	10	497	27	20	13	37	1.91
43781732--43781817	38	2.3	38	83	4	93	23	25	15	36	1.94
43782587--43782634	23	2.1	22	84	3	60	35	4	8	52	1.51
43789085--43789184	52	1.9	52	100	0	200	25	16	18	41	1.90
43791987--43792019	16	2.1	16	94	0	57	33	27	6	33	1.81
43794981--43795013	16	2.1	16	94	0	57	33	21	6	39	1.78
43796588--43796620	13	2.6	13	90	4	50	39	0	12	48	1.40
43805455--43805500	14	3.3	14	78	0	56	34	2	4	58	1.30
43807014--43807055	14	3.1	14	75	6	50	38	23	4	33	1.76
43810663--43810689	6	4.5	6	100	0	54	29	18	0	51	1.46
43813543--43813571	5	5.8	5	100	0	58	82	17	0	0	0.66
43814215--43814290	37	2.1	37	100	0	152	42	15	18	23	1.89
43814452--43814480	14	2.0	15	93	6	51	41	0	0	58	0.98
43814848--43815274	93	4.4	93	75	18	352	25	1	14	59	1.43
43814856--43815180	111	3.0	107	76	18	354	23	1	15	60	1.42
43814892--43815188	98	2.8	104	83	11	394	24	1	14	59	1.41
43814986--43815211	111	2.1	109	88	5	325	24	1	13	60	1.42
43814886--43815304	209	2.1	195	82	11	506	25	0	13	59	1.40
43815109--43815287	92	2.0	93	88	6	271	28	1	15	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43815531--43815562	17	1.9	17	93	6	57	25	0	6	68	1.12
43817701--43817786	42	2.0	42	100	0	172	40	13	6	38	1.72
43818980--43819014	14	2.6	13	86	8	52	0	25	0	74	0.82
43818980--43819017	17	2.1	19	90	9	62	0	26	0	73	0.83
43821104--43821277	25	7.3	24	78	9	162	35	18	25	20	1.95
43821104--43821277	47	3.7	47	87	7	205	35	18	25	20	1.95
43825658--43825811	40	3.8	41	84	4	163	27	21	24	25	1.99
43825749--43825855	40	2.7	40	83	0	124	28	23	28	20	1.99
43828721--43828800	25	3.2	24	65	28	60	46	11	10	32	1.73
43828715--43828893	49	3.7	49	91	0	270	44	10	9	35	1.71
43828714--43828929	98	2.2	98	86	5	287	44	9	10	35	1.71
43830713--43830746	16	2.1	17	89	10	54	32	32	5	29	1.81
43834029--43834140	28	4.0	28	78	2	109	27	14	29	28	1.95
43837037--43837070	16	2.1	16	94	0	59	50	26	2	20	1.63
43838296--43838330	16	2.2	16	89	0	52	48	22	20	8	1.76
43838558--43838665	28	3.8	29	80	2	105	26	14	28	29	1.95
43840180--43840219	20	2.0	20	90	0	62	37	5	2	55	1.35
43843600--43843646	22	2.1	22	100	0	94	36	4	23	36	1.75
43847055--43847275	47	4.7	46	76	12	204	24	27	18	29	1.98
43847059--43847312	140	1.8	140	85	6	363	24	27	18	29	1.98
43847153--43847334	94	1.9	93	80	7	208	26	28	18	26	1.98
43854485--43854666	40	4.6	40	80	10	203	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43854485--43854666	79	2.3	80	83	7	210	26	27	21	24	1.99
43868277--43868306	15	1.9	16	93	6	53	40	3	26	30	1.72
43892921--43893021	29	3.5	29	81	9	116	28	26	13	30	1.94
43892920--43893021	28	3.5	29	81	6	109	28	27	13	30	1.94
43902138--43902218	27	3.0	26	87	3	108	29	13	22	34	1.92
43907031--43907100	27	2.5	28	88	2	106	28	14	25	31	1.95
43907031--43907112	27	3.0	27	80	8	103	29	13	23	34	1.93
43908692--43908822	30	4.5	30	85	9	171	28	25	13	32	1.94
43914087--43914233	43	3.4	43	76	3	143	42	17	15	23	1.88
43916285--43916327	21	2.0	21	100	0	86	23	13	30	32	1.93
43916229--43916379	77	2.0	77	93	0	257	24	17	24	33	1.96
43924112--43924187	33	2.4	33	85	10	97	14	36	27	21	1.92
43935758--43936183	213	2.0	213	99	0	834	42	22	9	26	1.83
43936183--43936225	20	2.2	20	100	0	86	20	30	9	39	1.84
43942599--43942627	6	4.8	6	100	0	58	17	31	0	51	1.45
43945350--43945437	45	2.0	45	86	0	122	39	25	11	23	1.88
43948388--43948453	33	2.0	33	96	0	123	24	19	12	43	1.85
43955051--43955163	39	2.8	39	77	7	120	27	23	27	22	1.99
43955065--43955163	39	2.5	40	85	1	137	27	23	27	22	1.99
43955065--43955203	39	3.5	40	82	5	133	25	25	27	22	2.00
43956954--43957348	197	2.0	197	96	0	727	34	8	17	38	1.81
43957351--43957389	16	2.4	17	91	4	62	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43959154--43959227	20	3.8	20	76	7	62	21	29	13	35	1.92
43962068--43962121	29	1.9	29	85	7	76	38	3	27	29	1.74
43974426--43974561	29	4.7	29	86	3	157	24	30	15	29	1.95
43974401--43974560	58	2.8	58	81	0	176	23	33	15	27	1.95
43981181--43981922	47	15.6	47	92	2	1169	33	8	28	29	1.87
43981181--43981922	96	7.8	94	93	1	1169	33	8	28	29	1.87
43981181--43981922	143	5.2	141	92	1	1178	33	8	28	29	1.87
43984523--43984561	13	3.0	13	80	0	51	17	30	35	15	1.91
44001492--44001576	42	2.0	42	100	0	170	23	30	7	38	1.81
44003599--44003694	40	2.4	40	80	14	110	30	16	26	27	1.97
44005979--44006528	117	4.7	117	88	0	760	25	10	21	42	1.85
44007258--44007365	51	2.1	51	92	0	180	28	9	25	36	1.87
44023469--44023597	40	3.2	40	83	5	165	22	24	29	24	1.99
44028300--44028443	40	3.7	38	79	8	137	24	23	28	23	2.00
44028301--44028488	79	2.4	81	79	5	195	22	23	29	23	1.99
44032558--44032708	40	3.8	40	77	11	141	26	24	27	21	2.00
44032559--44032708	80	1.9	80	84	5	205	26	24	27	21	1.99
44040487--44040637	40	3.8	40	78	6	155	27	23	27	21	1.99
44040489--44040637	80	1.9	79	84	6	203	26	24	27	21	1.99
44043721--44043928	40	5.2	39	85	6	240	24	22	27	25	2.00
44047121--44047276	40	3.9	41	84	3	192	26	23	26	23	2.00
44047122--44047295	80	2.2	80	83	5	210	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44047121--44047295	40	4.4	40	78	7	178	26	22	26	25	2.00
44050448--44050603	40	3.9	41	84	3	192	26	23	26	23	2.00
44050449--44050622	80	2.2	80	83	5	210	25	22	26	25	2.00
44050448--44050622	40	4.4	40	78	7	178	26	22	26	25	2.00
44053768--44053923	40	3.9	41	84	3	192	26	23	26	23	2.00
44053769--44053942	80	2.2	80	83	5	210	25	22	26	25	2.00
44053768--44053942	40	4.4	40	78	7	178	26	22	26	25	2.00
44057096--44057251	40	3.9	41	84	3	192	26	23	26	23	2.00
44057097--44057270	80	2.2	80	83	5	210	25	22	26	25	2.00
44057096--44057270	40	4.4	40	78	7	178	26	22	26	25	2.00
44060462--44060576	29	4.0	29	83	6	128	27	28	14	28	1.95
44060453--44060563	58	1.9	57	85	1	150	27	30	15	27	1.96
44060782--44060831	16	3.1	16	79	0	55	22	20	14	44	1.86
44068213--44068302	29	3.1	29	78	7	85	31	28	13	26	1.94
44068547--44068583	16	2.3	16	90	9	58	10	24	18	45	1.81
44075885--44076028	39	3.7	39	90	0	234	22	29	21	26	1.99
44091993--44092143	40	3.8	39	80	11	139	25	27	20	26	1.99
44092031--44092211	40	4.5	40	84	5	206	25	27	22	24	2.00
44094686--44094766	40	2.0	40	100	0	162	53	12	9	24	1.69
44101319--44101460	45	3.2	45	80	9	132	33	29	19	17	1.95
44107569--44107731	40	4.1	39	79	7	166	25	26	21	25	1.99
44110011--44110112	45	2.3	45	86	3	143	33	25	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44110088--44110241	43	3.6	43	85	1	184	36	33	18	11	1.86
44110088--44110253	86	2.0	84	86	2	233	36	33	18	11	1.86
44110239--44110321	38	2.1	40	82	8	100	27	24	21	26	1.99
44120732--44120903	93	1.8	93	93	0	299	27	30	22	20	1.98
44120724--44120899	46	3.8	46	80	10	214	28	29	21	20	1.98
44123576--44123827	55	4.7	54	77	8	205	36	17	23	22	1.95
44123573--44123780	55	3.8	53	79	9	224	36	16	24	23	1.95
44123580--44123780	108	1.8	109	86	6	291	35	17	23	23	1.95
44128300--44128376	38	2.0	38	90	5	120	27	14	28	29	1.95
44136888--44136935	25	1.9	25	82	0	60	33	18	16	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328