genome.fa.s7.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  180  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53496833--53496899	30	2.2	31	81	5	73	52	5	11	29	1.62
53497328--53497377	24	2.1	24	82	14	59	56	2	4	38	1.30
53497473--53497506	11	3.2	11	87	4	52	44	0	11	44	1.40
53498795--53498854	31	1.9	31	90	6	95	21	13	11	53	1.71
53498797--53498868	31	2.3	30	83	9	83	23	11	12	52	1.71
53501608--53501663	30	1.9	30	86	13	82	26	3	7	62	1.38
53501612--53501673	29	2.1	29	82	11	74	27	1	6	64	1.27
53505894--53505942	20	2.5	20	100	0	98	40	4	20	34	1.71
53507839--53507877	19	2.1	19	90	0	60	58	12	0	28	1.34
53510491--53510658	40	4.2	40	79	6	187	25	20	27	26	1.99
53510909--53510946	19	2.0	19	100	0	76	36	5	10	47	1.61
53516404--53516561	29	5.6	29	90	3	241	26	14	32	26	1.95
53523181--53523216	16	2.2	16	90	0	54	86	0	13	0	0.58
53523606--53523794	29	6.6	29	93	0	308	26	14	32	26	1.95
53530549--53530592	19	2.3	19	88	0	61	40	31	6	20	1.79
53537029--53537080	19	2.7	18	74	11	50	59	5	13	21	1.55
53537029--53537081	20	2.7	18	75	13	52	60	5	13	20	1.53
53543995--53544054	25	2.7	21	76	18	66	61	3	1	33	1.22
53548117--53548153	17	2.4	16	86	13	51	37	2	8	51	1.46
53555966--53556021	13	4.5	13	76	13	64	42	16	1	39	1.58
53560210--53560288	40	1.9	41	87	10	117	15	35	22	26	1.94
53561264--53561434	50	3.6	50	78	13	166	25	29	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53561407--53561574	46	3.6	46	80	6	187	20	28	21	29	1.98
53561407--53561577	94	1.8	92	83	7	229	21	28	21	28	1.98
53569794--53569850	22	2.5	21	78	16	53	50	7	0	42	1.29
53570545--53570590	24	1.9	24	90	0	74	17	23	8	50	1.74
53574709--53574733	1	25.0	1	100	0	50	100	0	0	0	0.00
53576841--53576900	15	4.0	15	70	8	50	50	0	1	48	1.11
53577118--53577166	22	2.4	19	81	18	55	18	18	14	48	1.80
53577579--53577623	24	1.9	24	86	4	65	64	0	2	33	1.06
53578622--53578646	13	1.9	13	100	0	50	40	16	4	40	1.67
53580028--53580059	7	4.2	8	88	11	50	25	12	12	50	1.75
53580028--53580059	15	2.1	15	94	0	55	25	12	12	50	1.75
53583603--53583689	23	3.7	23	80	4	86	29	12	14	42	1.83
53586520--53586643	60	2.1	60	84	6	162	30	17	22	29	1.97
53588994--53589043	25	2.0	24	85	11	66	4	30	0	66	1.10
53593888--53593915	14	2.0	14	100	0	56	50	7	0	42	1.30
53594390--53594459	27	2.5	28	97	2	133	28	12	27	31	1.93
53597691--53597736	20	2.3	21	75	14	53	26	19	28	26	1.99
53597729--53597865	60	2.3	60	84	6	179	28	18	25	27	1.98
53597765--53597870	28	3.7	28	74	19	92	26	17	28	27	1.98
53604105--53604136	16	2.0	16	100	0	64	43	6	0	50	1.27
53609552--53609728	38	4.7	38	80	4	180	16	20	25	36	1.94
53614495--53614607	39	2.9	39	84	2	147	24	29	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53619924--53620132	78	2.6	79	83	3	269	30	28	22	19	1.98
53619938--53620161	39	5.7	40	86	4	233	27	26	24	21	1.99
53634524--53634595	36	2.0	36	100	0	144	27	22	16	33	1.95
53635227--53635309	28	3.0	28	78	7	80	31	22	18	27	1.97
53635260--53635321	28	2.2	28	85	5	81	33	24	17	24	1.96
53635405--53635550	29	5.1	29	68	18	90	23	22	19	33	1.97
53639697--53639736	11	3.5	11	83	12	53	57	5	0	37	1.21
53642504--53642544	21	1.9	22	90	5	66	9	24	46	19	1.80
53644260--53644442	39	4.6	39	84	2	222	23	30	21	24	1.99
53646294--53646323	2	15.0	2	100	0	60	0	0	50	50	1.00
53649974--53650235	47	5.6	47	79	8	234	23	28	19	28	1.98
53649971--53650238	93	2.9	93	80	9	280	23	28	19	28	1.98
53651796--53651834	19	2.1	19	90	0	60	30	15	15	38	1.88
53653097--53653143	21	2.3	21	96	3	87	34	8	0	57	1.29
53658687--53658732	20	2.3	21	82	14	62	26	17	28	28	1.98
53660314--53660396	40	2.0	40	88	2	121	33	24	14	27	1.94
53674348--53674571	40	5.6	40	87	5	301	24	22	26	26	2.00
53674347--53674571	81	2.8	81	89	4	323	24	22	26	26	2.00
53679059--53679130	24	3.0	24	75	4	72	15	29	19	36	1.92
53679188--53679256	26	2.6	27	82	11	90	17	26	20	36	1.94
53682751--53682783	14	2.3	15	94	5	59	6	6	12	75	1.16
53684644--53684718	39	1.9	39	83	0	96	45	18	5	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53688152--53688217	33	2.0	33	96	0	123	24	16	15	43	1.86
53692837--53692876	16	2.6	15	84	7	53	52	0	15	32	1.43
53693795--53693931	23	5.8	23	80	11	120	24	23	20	32	1.98
53693816--53693909	45	2.1	45	84	7	120	21	24	20	34	1.97
53702135--53702185	9	5.9	8	79	20	50	66	3	1	27	1.20
53702126--53702184	18	3.3	18	77	17	61	66	5	1	27	1.22
53702127--53702185	28	2.2	26	85	11	75	66	5	1	27	1.22
53702627--53702679	27	2.0	27	85	7	72	33	3	0	62	1.13
53702658--53702699	19	2.2	19	83	8	50	35	0	2	61	1.09
53702627--53702695	27	2.5	26	81	11	68	34	2	1	60	1.20
53702686--53702737	10	5.1	10	78	17	54	30	1	1	65	1.14
53702686--53702744	29	1.9	29	86	10	82	28	3	3	64	1.26
53702825--53702880	19	3.1	19	75	15	64	30	0	3	66	1.09
53704457--53704514	28	2.1	28	96	0	107	27	24	0	48	1.51
53706665--53706701	19	1.9	19	88	0	56	67	2	2	27	1.17
53712786--53712826	18	2.2	19	86	4	57	39	0	0	60	0.96
53713685--53713725	9	4.2	10	85	14	59	75	0	0	24	0.80
53718701--53718871	93	1.8	93	94	0	306	28	28	21	22	1.99
53718696--53718868	46	3.7	46	77	13	201	28	27	21	22	1.99
53722039--53722077	18	2.2	18	95	0	69	23	0	12	64	1.28
53722269--53722360	44	2.1	44	83	4	114	21	21	22	33	1.97
53724130--53724319	39	4.9	39	90	3	285	24	21	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53724131--53724351	115	1.9	118	88	2	340	24	22	29	23	1.99
53724131--53724351	76	2.8	78	86	4	293	24	22	29	23	1.99
53731195--53731386	39	4.9	39	90	0	285	24	20	31	23	1.98
53731196--53731417	117	1.9	119	89	1	349	24	21	30	23	1.99
53738323--53738414	27	3.4	27	75	12	82	41	21	19	17	1.90
53749488--53749671	79	2.3	81	85	7	243	24	22	27	25	2.00
53749488--53749671	40	4.6	39	83	9	221	24	22	27	25	2.00
53749488--53749694	79	2.6	79	80	12	237	25	22	26	25	2.00
53762420--53762486	27	2.5	27	80	7	75	50	1	7	40	1.39
53763514--53763552	18	2.2	18	95	0	69	23	0	12	64	1.28
53763744--53763835	44	2.1	44	85	0	121	22	19	21	35	1.96
53769830--53769871	22	2.1	19	86	13	57	52	0	0	47	1.00
53773091--53773281	39	4.8	40	84	7	221	23	20	30	25	1.98
53773093--53773314	79	2.8	77	79	10	225	24	20	29	24	1.99
53785408--53786116	353	2.0	353	100	0	1418	23	20	15	40	1.90
53789742--53789778	20	1.9	18	89	10	56	54	5	2	37	1.38
53802694--53802744	26	2.0	26	100	0	102	31	9	27	31	1.89
53804227--53804279	26	2.0	26	85	7	72	39	22	13	24	1.90
53809617--53809746	40	3.3	39	83	4	163	23	28	25	23	1.99
53813049--53813246	71	2.8	70	92	3	294	33	17	28	20	1.95
53813115--53813232	41	3.1	41	60	28	98	32	17	28	21	1.96
53813083--53813246	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53817049--53817199	40	3.8	40	77	11	141	26	24	27	21	2.00
53817086--53817215	40	3.2	40	79	2	154	23	23	28	23	2.00
53817048--53817215	80	2.1	80	82	6	207	26	23	27	22	2.00
53825038--53825188	40	3.8	40	78	6	155	27	23	27	21	1.99
53825075--53825204	40	3.2	40	79	2	154	23	23	28	23	2.00
53825038--53825204	80	2.1	79	82	7	205	26	23	27	22	2.00
53838368--53838439	20	3.6	20	94	0	126	25	27	30	16	1.97
53840535--53840580	24	1.9	24	86	8	67	32	26	19	21	1.97
53843952--53844064	28	4.1	28	86	3	131	23	16	33	25	1.96
53845300--53845333	18	1.9	18	88	5	52	41	11	17	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328