genome.fa.s7.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  164  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48119195--48119228	17	1.9	18	88	5	52	73	0	20	5	1.04
48120492--48120715	99	2.3	100	85	4	285	26	17	25	30	1.97
48120492--48120715	49	4.5	50	82	3	258	26	17	25	30	1.97
48130437--48130607	40	4.3	39	77	10	159	28	21	26	23	1.99
48143142--48143211	27	2.5	28	88	2	106	28	14	25	31	1.95
48143142--48143223	27	3.0	27	80	8	103	29	13	23	34	1.93
48146131--48146328	96	2.1	94	90	1	306	34	11	27	26	1.91
48146158--48146283	22	5.4	22	66	20	67	34	12	27	25	1.92
48146131--48146331	47	4.2	47	91	2	312	35	11	27	25	1.90
48146347--48146437	46	2.0	46	91	0	146	34	7	30	27	1.85
48148141--48148295	40	3.9	40	93	2	251	25	22	26	25	2.00
48148303--48148413	57	1.9	57	87	0	159	23	18	27	30	1.97
48152347--48152423	22	3.4	22	69	22	68	35	12	27	24	1.92
48152271--48152468	96	2.1	94	90	1	306	34	12	27	25	1.92
48152347--48152468	22	5.3	22	63	30	58	35	12	27	25	1.91
48152271--48152471	47	4.2	47	91	2	312	34	11	27	25	1.91
48152271--48152513	96	2.5	95	84	4	301	34	11	28	25	1.91
48152487--48152577	46	2.0	46	91	0	146	34	7	30	27	1.85
48154679--48154739	30	2.0	30	83	0	77	31	22	8	37	1.84
48163462--48163503	22	1.9	22	85	0	57	69	0	28	2	1.01
48178099--48178170	23	3.1	23	78	9	76	79	2	5	12	1.02
48178100--48178170	11	6.3	11	79	12	72	78	2	5	12	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48178111--48178170	6	10.3	6	83	7	70	80	1	5	13	0.96
48182784--48182939	68	2.2	68	77	13	149	20	28	16	34	1.94
48188566--48188768	40	5.1	40	95	0	352	16	18	29	35	1.93
48193498--48193653	68	2.2	68	77	13	149	20	28	16	34	1.94
48200673--48200828	68	2.2	68	77	13	149	20	28	16	34	1.94
48219252--48219282	15	2.1	15	100	0	62	25	19	12	41	1.87
48221860--48222027	40	4.2	40	80	5	173	23	26	21	28	1.99
48229879--48230047	40	4.2	40	80	4	173	23	26	21	28	1.99
48233182--48233348	40	4.2	40	82	2	185	24	26	22	26	2.00
48241118--48241285	40	4.2	40	79	3	160	23	26	23	27	2.00
48241134--48241283	80	1.9	80	83	8	198	22	26	24	27	1.99
48244312--48244493	40	4.6	40	84	7	219	22	21	28	26	1.99
48244312--48244493	80	2.3	80	90	0	276	22	21	28	26	1.99
48248121--48248345	40	5.6	40	81	5	231	25	23	27	24	2.00
48248121--48248381	80	3.3	80	80	3	285	25	22	26	24	2.00
48248121--48248381	120	2.2	121	81	6	300	25	22	26	24	2.00
48251724--48251835	27	4.1	27	82	7	129	15	23	23	38	1.92
48251724--48251835	54	2.1	54	86	3	154	15	23	23	38	1.92
48258777--48258885	51	2.1	52	89	3	166	21	6	31	41	1.78
48260148--48260299	47	3.2	46	83	3	151	32	24	13	28	1.94
48260215--48260354	47	2.9	47	84	8	165	33	25	13	27	1.93
48260219--48260413	54	3.8	53	79	5	177	32	25	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48265748--48265805	26	2.3	26	82	11	68	22	10	1	65	1.32
48273538--48273577	21	1.9	21	84	0	53	27	12	27	32	1.93
48273666--48273708	6	7.3	6	92	2	70	16	2	0	81	0.79
48275178--48275211	18	1.9	18	94	5	61	29	20	11	38	1.88
48276467--48276569	28	3.7	28	88	0	143	24	34	15	25	1.94
48276785--48276832	16	3.0	16	84	0	60	8	18	20	52	1.71
48281157--48281259	28	3.7	28	84	5	118	25	36	14	23	1.93
48281477--48281539	16	3.9	16	76	12	58	14	22	14	49	1.79
48281471--48281537	32	2.1	32	86	5	91	13	19	14	52	1.75
48285755--48285872	41	3.1	41	60	28	98	32	17	28	21	1.96
48285723--48285886	71	2.3	71	100	0	328	35	17	28	18	1.94
48287611--48287636	8	3.2	8	100	0	52	0	23	0	76	0.78
48289905--48290092	62	3.0	61	78	6	191	22	25	24	28	1.99
48295059--48295138	40	2.0	40	97	0	151	46	12	5	36	1.64
48298181--48298231	18	2.8	18	74	14	52	54	3	1	39	1.30
48299525--48299559	17	2.0	18	94	5	63	11	45	25	17	1.81
48303527--48303858	144	2.3	144	83	3	418	27	19	28	24	1.99
48303528--48303859	48	6.9	48	77	4	321	27	19	28	24	1.98
48305800--48305855	21	2.6	22	83	8	71	46	30	10	12	1.76
48311798--48312087	48	6.0	48	89	4	420	33	7	28	30	1.84
48311798--48312036	100	2.4	100	92	2	387	34	6	27	31	1.82
48311798--48312084	148	1.9	148	90	1	450	33	7	28	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48312223--48312374	74	2.1	74	96	0	277	26	18	29	25	1.98
48312234--48312378	37	3.9	37	91	3	238	24	19	30	25	1.98
48315092--48315305	40	5.4	40	94	1	367	23	22	27	26	2.00
48315333--48315443	57	1.9	57	85	0	150	23	18	27	29	1.98
48316177--48316204	2	14.0	2	100	0	56	50	0	0	50	1.00
48319452--48319521	27	2.5	28	88	2	106	28	14	25	31	1.95
48319452--48319533	27	3.0	27	80	8	103	29	13	23	34	1.93
48322157--48322374	40	5.5	40	91	2	316	22	23	28	24	1.99
48328868--48328911	6	7.5	6	82	2	54	84	0	15	0	0.63
48330170--48330387	40	5.5	40	90	2	298	22	22	28	26	1.99
48336336--48336559	40	5.7	40	88	4	262	25	25	21	26	2.00
48340550--48340720	93	1.8	93	92	2	290	29	29	19	21	1.98
48340542--48340716	46	3.8	45	79	10	201	29	29	19	21	1.98
48343084--48343122	15	2.6	15	95	0	69	53	10	23	12	1.69
48346070--48346239	93	1.8	93	91	2	279	29	29	19	21	1.98
48346061--48346236	46	3.8	46	76	16	184	30	28	19	21	1.97
48346112--48346255	46	3.1	45	72	22	113	29	29	18	22	1.97
48352132--48352223	32	2.8	32	77	12	98	30	27	18	23	1.98
48352145--48352219	33	2.2	34	81	9	91	30	25	17	26	1.97
48352536--48352588	26	2.0	26	85	7	72	20	16	22	39	1.92
48353842--48353936	12	7.9	12	65	9	50	21	37	6	34	1.79
48353838--48353943	24	4.4	24	91	1	158	18	38	5	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48356879--48356953	28	2.6	28	78	2	87	21	36	20	22	1.96
48356937--48357010	29	2.6	29	95	0	139	27	31	14	27	1.95
48364752--48364826	28	2.6	28	78	2	87	21	36	20	22	1.96
48364810--48364883	29	2.6	29	95	0	139	27	31	14	27	1.95
48371329--48371398	27	2.6	27	97	2	131	31	27	12	28	1.93
48379195--48379264	27	2.6	27	93	2	113	32	25	12	28	1.93
48381022--48381066	6	7.7	6	95	5	83	31	0	0	68	0.89
48390969--48391014	23	2.0	23	86	0	65	47	30	0	21	1.51
48395897--48396068	46	3.7	46	79	11	208	22	20	27	29	1.99
48395894--48396063	92	1.8	93	94	1	306	21	21	28	28	1.99
48410748--48410782	8	4.4	8	96	0	52	5	22	17	54	1.64
48415219--48415295	27	2.9	27	76	0	82	27	15	24	32	1.95
48425900--48425940	21	2.0	21	85	0	55	26	17	36	19	1.94
48431503--48431678	40	4.4	40	79	5	176	25	25	25	24	2.00
48431504--48431678	80	2.2	81	81	3	201	25	25	25	24	2.00
48431555--48431696	40	3.6	39	76	11	117	28	23	24	22	1.99
48431540--48431696	80	2.0	80	80	2	181	29	24	24	22	1.99
48431625--48431708	40	2.1	40	82	4	98	28	27	23	20	1.99
48436716--48436871	43	3.6	43	83	4	206	24	18	32	25	1.97
48440115--48440164	26	1.9	26	84	15	68	32	10	18	40	1.83
48443397--48443567	43	4.0	43	84	3	220	24	18	32	25	1.97
48447476--48447526	21	2.4	21	96	0	93	25	27	29	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48448706--48448824	46	2.6	44	81	6	148	29	31	14	25	1.95
48451436--48451460	9	2.8	9	100	0	50	44	8	0	48	1.32
48455166--48455198	17	1.9	17	88	11	50	48	18	9	24	1.76
48459532--48459739	40	5.2	39	83	4	222	25	27	21	25	1.99
48462453--48462778	48	6.8	48	74	7	225	28	24	17	29	1.97
48462510--48462789	96	2.9	96	85	5	379	29	24	17	29	1.97
48474429--48474494	28	2.4	28	84	2	80	37	21	22	18	1.94
48477312--48477370	27	2.2	27	85	11	77	37	22	23	16	1.94
48487040--48487213	48	3.6	47	77	7	179	28	26	17	27	1.98
48487040--48487222	96	1.9	96	89	2	287	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328