genome.fa.s7.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  184  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54950925--54951166	27	9.0	27	80	3	265	36	18	20	24	1.95
54950920--54951170	81	3.1	81	84	3	292	37	18	19	24	1.94
54951683--54951876	6	31.3	6	74	15	137	19	18	13	48	1.81
54951683--54951850	31	5.6	31	71	16	140	19	18	14	47	1.82
54951686--54951855	37	4.7	37	77	11	174	19	18	14	47	1.82
54953832--54954007	27	6.5	27	84	3	212	38	19	9	31	1.84
54953832--54954068	81	2.9	79	80	8	228	37	20	10	32	1.86
54953832--54954116	27	10.6	27	79	5	186	37	21	9	31	1.86
54954103--54954343	27	9.0	27	82	2	263	36	18	20	24	1.94
54954098--54954347	80	3.1	81	84	1	315	37	18	19	24	1.94
54954100--54954347	107	2.3	107	83	1	327	37	18	19	24	1.94
54954592--54954643	27	2.0	26	84	3	68	17	25	23	34	1.96
54954862--54955055	6	31.3	6	75	15	164	19	18	14	47	1.83
54954862--54955029	31	5.6	31	75	16	167	19	19	15	46	1.84
54954868--54955034	37	4.6	37	79	11	177	19	19	14	46	1.84
54957008--54957321	27	11.6	27	85	1	342	41	20	7	30	1.81
54957008--54957270	54	4.9	54	89	2	377	41	19	7	31	1.80
54957377--54957520	27	5.3	27	90	0	207	34	19	23	22	1.97
54957947--54958114	6	27.2	6	70	14	110	20	17	14	47	1.82
54957947--54958010	25	2.6	25	84	0	83	18	17	15	48	1.81
54957965--54958047	37	2.2	37	82	4	105	19	16	16	46	1.84
54958008--54958072	25	2.6	25	82	4	78	23	16	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54957947--54958109	62	2.6	62	90	0	245	20	17	15	47	1.83
54958033--54958112	37	2.2	37	93	0	133	20	16	15	48	1.81
54958055--54958123	12	5.7	12	80	10	50	17	17	14	50	1.78
54957993--54958114	19	6.6	18	69	15	61	19	17	15	47	1.83
54959062--54959184	38	3.2	38	82	5	97	35	28	18	17	1.93
54959095--54959211	37	3.1	37	88	3	164	36	25	19	17	1.94
54960208--54960293	42	2.0	42	97	0	163	29	27	12	30	1.93
54964150--54964267	38	3.1	38	87	1	175	37	24	19	18	1.94
54966993--54967035	16	2.7	16	89	7	61	55	20	16	6	1.64
54966992--54967037	24	2.0	23	83	12	58	54	21	17	6	1.65
54967246--54967324	29	2.7	29	88	0	86	29	11	29	30	1.92
54967259--54967365	29	3.7	28	79	10	110	27	12	31	28	1.92
54967954--54968106	27	5.6	27	74	13	98	40	18	9	30	1.83
54968589--54968653	22	3.0	22	80	8	78	20	23	23	33	1.97
54968856--54968903	22	2.2	22	81	7	53	10	20	25	43	1.83
54969825--54969855	9	3.4	9	95	0	53	38	0	12	48	1.42
54971615--54971711	27	3.6	27	79	10	101	46	18	5	29	1.71
54971695--54971766	28	2.6	28	80	6	85	47	16	5	30	1.70
54973036--54973132	27	3.6	27	79	10	101	46	18	5	29	1.71
54973116--54973187	28	2.6	28	78	6	76	47	16	4	31	1.66
54973638--54973702	22	3.0	22	80	8	78	20	26	23	30	1.98
54976286--54977391	47	23.4	47	92	1	1672	31	9	31	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54976999--54977074	22	3.3	22	64	10	62	28	11	30	28	1.92
54978696--54978738	22	2.0	22	81	9	52	11	18	23	46	1.82
54980122--54980167	22	2.1	22	100	0	92	54	8	4	32	1.51
54982104--54982142	20	2.0	20	85	10	53	35	20	0	43	1.52
54983959--54984077	46	2.6	45	86	5	159	21	26	21	31	1.98
54986602--54986640	16	2.4	16	82	0	51	43	23	23	10	1.84
54986851--54986957	29	3.7	28	75	9	92	27	13	31	28	1.93
54991100--54991192	29	3.2	29	80	7	102	25	13	30	30	1.94
55001265--55001328	22	2.9	22	85	0	83	32	31	21	14	1.93
55001574--55001638	27	2.4	27	84	5	69	26	18	20	35	1.95
55004518--55004729	23	9.2	23	77	6	198	21	22	23	32	1.98
55004519--55004725	69	3.0	67	80	9	229	21	22	23	32	1.98
55008333--55008392	27	2.3	26	82	2	66	36	20	21	21	1.95
55011292--55011467	46	3.8	46	81	10	232	20	21	29	28	1.98
55011288--55011459	93	1.8	93	96	0	317	20	22	30	27	1.98
55014415--55014483	15	4.6	15	83	0	84	11	17	13	57	1.64
55014406--55014493	30	3.0	30	81	8	99	10	17	15	56	1.66
55017912--55018095	40	4.6	39	75	6	138	26	23	27	22	2.00
55017952--55018140	80	2.4	81	77	4	186	23	24	29	22	1.99
55020094--55020269	46	3.8	46	81	10	232	20	21	29	28	1.98
55020090--55020261	93	1.8	93	96	0	317	20	22	30	27	1.98
55023966--55024040	37	2.0	37	100	0	150	45	2	32	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55028973--55029121	80	1.9	80	81	2	183	22	30	24	22	1.99
55029014--55029121	40	2.7	38	85	8	128	21	29	25	23	1.99
55036941--55037089	80	1.9	80	81	2	183	22	30	24	22	1.99
55036982--55037089	40	2.7	38	85	8	128	21	29	25	23	1.99
55041206--55041262	27	2.2	26	83	3	69	35	21	24	19	1.96
55045543--55045623	33	2.4	34	76	12	87	28	23	18	29	1.98
55045934--55045986	26	2.0	26	85	7	72	20	16	22	39	1.92
55047242--55047363	24	5.0	24	90	1	190	19	38	5	36	1.76
55052440--55052475	18	2.0	18	100	0	72	27	16	5	50	1.68
55052446--55052487	18	2.4	18	88	4	59	28	14	4	52	1.62
55055340--55055425	6	14.0	6	68	18	52	46	12	17	23	1.82
55055326--55055403	37	2.1	37	87	0	111	43	14	20	21	1.87
55055346--55055425	31	2.6	31	79	0	88	46	12	17	23	1.82
55055544--55055598	27	2.0	28	82	3	67	36	20	21	21	1.95
55055867--55056051	27	6.9	27	86	2	228	41	5	20	32	1.75
55055867--55056052	81	2.3	81	89	1	275	40	5	20	33	1.75
55055915--55056086	81	2.1	81	85	0	227	40	6	21	31	1.78
55056061--55056259	81	2.5	81	79	4	197	29	11	20	39	1.87
55056061--55056232	27	6.4	27	84	1	159	30	9	20	40	1.84
55056146--55056259	54	2.1	54	80	3	122	29	11	19	39	1.87
55056227--55056294	27	2.5	27	82	0	73	27	23	19	29	1.98
55058155--55058229	6	12.3	6	75	13	73	50	14	17	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55058164--55058257	37	2.5	37	87	0	134	47	12	20	19	1.81
55058206--55058281	31	2.5	31	82	0	98	46	13	18	22	1.83
55058404--55058465	27	2.2	28	82	2	72	35	19	22	22	1.96
55058726--55058892	27	6.2	27	90	0	253	40	8	21	28	1.83
55058729--55058919	81	2.4	81	87	0	265	39	8	21	30	1.84
55058882--55059064	27	6.8	26	82	5	168	30	9	20	39	1.84
55058889--55059064	80	2.2	81	82	3	203	30	9	20	40	1.83
55059046--55059128	27	3.1	27	77	6	87	27	19	19	33	1.96
55061347--55061509	39	4.2	39	91	0	263	23	33	20	22	1.97
55069275--55069437	39	4.2	39	91	0	263	23	33	20	22	1.97
55078233--55078297	29	2.2	29	97	0	121	50	12	15	21	1.76
55083430--55083665	49	4.9	50	74	14	228	27	18	25	28	1.98
55086725--55086885	29	5.6	29	88	1	234	27	24	16	31	1.97
55086725--55086885	58	2.8	58	92	4	263	27	24	16	31	1.97
55086725--55086885	87	1.9	87	90	2	261	27	24	16	31	1.97
55087552--55087697	37	3.9	37	94	0	247	27	30	18	23	1.97
55087844--55088136	48	6.1	48	95	0	523	30	27	5	36	1.80
55091413--55091884	40	11.8	40	88	0	647	27	29	20	22	1.99
55093157--55093263	37	2.9	37	91	2	173	26	29	19	24	1.98
55093410--55093652	48	5.1	48	97	1	454	31	27	5	35	1.80
55093410--55093652	95	2.6	96	97	1	454	31	27	5	35	1.80
55096938--55097277	40	8.4	40	86	0	419	25	29	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55097137--55097202	23	3.1	23	59	24	54	24	28	22	24	1.99
55098520--55098628	37	2.9	37	90	0	164	26	26	19	27	1.99
55098775--55099067	48	6.1	48	97	0	550	30	27	6	35	1.82
55106433--55106470	19	2.0	20	89	5	60	36	15	21	26	1.93
55107026--55108098	540	2.0	540	97	0	2047	30	19	22	27	1.98
55114610--55114676	33	2.0	33	100	0	134	38	8	22	29	1.85
55117873--55118094	27	8.3	27	83	5	254	28	24	7	39	1.82
55118125--55118290	27	6.1	27	78	3	136	40	19	8	31	1.81
55118288--55118339	27	1.9	27	88	7	79	38	13	13	34	1.84
55118393--55118453	27	2.3	27	82	0	77	37	18	24	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328