genome.fa.s7.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  178  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52805114--52805235	56	2.2	56	90	0	190	29	30	17	22	1.97
52805391--52805533	43	3.3	43	86	0	187	33	31	21	13	1.92
52805522--52805682	40	4.0	40	93	0	259	27	29	22	20	1.98
52812054--52812102	10	4.8	10	85	5	71	42	20	4	32	1.71
52812049--52812092	21	2.1	21	100	0	88	38	18	9	34	1.82
52812049--52812125	10	7.4	11	79	7	63	35	19	10	35	1.86
52812054--52812113	31	1.9	31	100	0	120	40	20	6	33	1.78
52814338--52814391	27	2.0	27	89	7	83	24	16	27	31	1.96
52814347--52814400	27	2.0	27	88	0	81	24	14	27	33	1.94
52816926--52816986	27	2.3	27	82	0	77	29	18	18	34	1.94
52816971--52817032	27	2.3	27	91	0	97	24	16	19	40	1.91
52817025--52817119	27	3.7	26	76	11	88	27	5	21	46	1.72
52817028--52817126	51	1.9	51	85	4	137	29	6	19	45	1.74
52818039--52818097	23	2.6	22	81	5	73	25	22	18	33	1.96
52817991--52818097	45	2.3	45	81	10	119	24	21	17	36	1.95
52817991--52818091	23	4.4	23	72	8	80	23	21	18	35	1.96
52820834--52820889	6	9.0	6	77	14	60	78	1	16	3	0.97
52820835--52820909	27	2.9	27	84	9	93	76	2	17	4	1.06
52824562--52824609	20	2.4	21	80	16	57	37	16	27	18	1.92
52827013--52827043	9	3.4	9	100	0	62	80	0	0	19	0.71
52827031--52827074	23	1.9	23	86	9	63	72	2	18	6	1.17
52827232--52827307	38	2.0	38	97	0	143	31	11	10	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52829184--52829296	35	3.2	37	63	23	96	21	7	30	39	1.82
52829189--52829304	40	3.2	40	63	31	103	21	7	31	39	1.82
52829187--52829327	70	2.0	70	97	0	264	21	7	29	41	1.81
52831562--52831598	15	2.5	15	90	0	56	54	13	21	10	1.69
52838001--52838198	27	7.3	27	87	0	243	28	21	8	41	1.82
52838001--52838198	81	2.4	81	87	0	279	28	21	8	41	1.82
52838197--52838326	54	2.4	54	83	5	165	37	20	12	29	1.89
52838230--52838355	27	4.7	27	87	3	173	39	22	7	30	1.82
52838230--52838466	27	8.7	27	80	5	129	39	19	9	32	1.83
52839359--52839427	25	2.9	23	81	14	77	26	23	23	27	2.00
52839383--52839431	24	2.0	25	92	4	82	28	18	22	30	1.97
52839575--52839708	42	3.2	42	94	0	241	31	14	19	34	1.92
52839732--52839815	31	2.7	31	87	1	125	26	15	28	29	1.96
52851730--52851891	71	2.3	72	86	3	238	36	19	26	17	1.94
52861236--52861277	22	2.1	19	86	13	57	45	0	0	54	0.99
52861236--52861274	16	2.5	15	83	8	51	46	0	0	53	1.00
52869356--52869517	39	4.2	39	91	2	263	22	20	32	24	1.98
52869367--52869517	77	1.9	79	94	2	270	23	21	31	23	1.98
52869356--52869547	39	4.9	39	88	1	251	22	21	31	23	1.98
52877321--52877513	39	4.9	40	87	1	257	23	20	31	24	1.98
52881946--52882000	27	2.0	27	82	6	67	50	1	3	43	1.30
52889529--52889710	40	4.6	40	79	8	176	24	24	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52889529--52889710	78	2.3	80	82	6	210	24	24	28	23	2.00
52897572--52897753	40	4.6	40	79	8	176	24	24	28	23	2.00
52897572--52897753	78	2.3	80	82	6	210	24	24	28	23	2.00
52903922--52903963	20	2.1	20	78	8	50	11	30	21	35	1.90
52908590--52908764	39	4.5	40	86	5	225	25	22	28	24	1.99
52908590--52908764	79	2.2	77	85	7	219	25	22	28	24	1.99
52916623--52916827	40	5.2	40	90	4	303	24	21	28	25	1.99
52922339--52922383	22	2.0	22	95	0	81	31	15	15	37	1.89
52925386--52925488	29	3.6	28	78	5	107	22	16	32	29	1.96
52929339--52929517	50	3.7	49	79	6	168	29	21	27	21	1.99
52936657--52936863	53	3.8	53	74	3	180	38	17	23	20	1.93
52939598--52939860	50	5.6	49	74	13	167	26	21	29	22	1.99
52939640--52939860	99	2.3	92	81	7	239	25	21	30	22	1.98
52940949--52940987	21	1.9	21	89	5	62	10	30	30	28	1.90
52942303--52942401	28	3.5	28	87	4	119	27	15	27	30	1.96
52951107--52951174	33	2.1	33	100	0	136	44	8	8	38	1.67
52955172--52955232	30	2.0	30	87	0	86	29	24	8	37	1.84
52961368--52961465	40	2.3	40	84	6	115	26	18	26	28	1.98
52963990--52964197	40	5.2	39	82	6	224	25	27	21	25	1.99
52966077--52966141	33	2.0	33	84	6	87	43	16	24	15	1.87
52966134--52966194	27	2.3	27	85	0	86	31	19	27	21	1.97
52967873--52967914	20	2.1	20	95	0	75	21	35	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52970999--52971040	2	21.0	2	100	0	84	50	0	0	50	1.00
52979472--52979507	16	2.2	17	90	5	56	25	0	30	44	1.54
52982263--52982426	45	3.7	45	85	8	185	23	26	23	26	2.00
52986631--52986805	47	3.7	48	76	13	159	24	29	17	28	1.97
52986632--52986945	46	6.7	46	73	12	191	24	28	18	28	1.98
52989778--52989825	24	2.0	25	87	4	71	39	16	18	25	1.91
52993742--52993904	83	2.0	83	96	0	299	39	14	12	33	1.84
53000464--53000525	29	2.1	30	87	3	90	22	4	14	58	1.56
53001060--53001086	8	3.4	8	100	0	54	25	0	11	62	1.28
53003379--53003417	20	1.9	21	89	5	62	41	0	0	58	0.98
53009910--53010040	35	3.6	35	81	11	129	32	10	23	32	1.89
53017375--53017467	40	2.5	35	87	8	123	32	8	25	33	1.86
53017378--53017502	40	3.4	34	79	14	99	34	11	23	31	1.90
53017439--53017509	36	2.0	35	88	2	106	33	14	21	30	1.92
53022237--53022275	15	2.6	15	88	8	53	33	0	0	66	0.92
53022453--53022495	2	21.5	2	100	0	86	48	0	0	51	1.00
53030771--53030830	30	2.0	30	80	3	68	45	0	35	20	1.51
53035061--53035224	86	1.9	86	91	2	267	22	12	21	42	1.87
53035430--53035500	37	1.9	37	94	0	124	46	1	4	47	1.30
53035508--53035587	16	5.1	16	79	16	71	40	0	1	58	1.06
53035505--53035550	15	2.9	17	75	24	55	43	0	0	56	0.99
53035524--53035620	32	3.0	32	82	11	108	40	1	1	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53038047--53038079	15	2.2	15	94	0	57	33	3	18	45	1.65
53038120--53038171	26	2.0	26	100	0	104	46	15	11	26	1.80
53044873--53044913	22	1.9	21	85	5	55	63	2	2	31	1.20
53053959--53054187	113	2.0	113	95	0	413	25	16	25	32	1.96
53055383--53055437	26	2.0	28	89	6	87	60	7	10	21	1.55
53065510--53065626	31	3.8	30	72	13	103	53	5	1	39	1.33
53065508--53065624	61	1.9	61	91	0	189	53	5	1	39	1.33
53068721--53068767	17	2.8	17	75	15	53	42	21	14	21	1.88
53075486--53076127	312	2.1	312	91	1	1025	37	16	9	35	1.82
53077343--53077368	12	2.2	12	100	0	52	69	0	0	30	0.89
53089583--53089610	14	2.0	14	100	0	56	35	7	21	35	1.81
53092062--53092160	49	2.0	49	92	0	162	30	13	18	38	1.88
53094393--53094427	8	4.4	8	88	0	52	45	20	22	11	1.82
53094385--53094427	16	2.7	16	81	0	59	48	20	20	9	1.77
53094572--53094649	29	2.7	29	80	2	86	28	16	25	29	1.97
53095732--53095765	18	1.9	18	88	5	52	35	14	17	32	1.91
53098952--53099133	41	4.6	39	82	5	161	15	20	29	34	1.94
53098999--53099132	38	3.4	39	84	5	137	16	20	29	34	1.94
53099319--53099383	21	3.3	21	64	27	61	35	9	16	38	1.81
53100201--53100238	18	2.1	18	85	9	51	34	0	15	50	1.45
53108187--53108235	25	2.0	25	83	0	62	36	6	14	42	1.70
53113916--53114049	46	3.0	44	82	8	155	29	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53115094--53115210	43	2.7	44	84	6	141	14	28	35	22	1.93
53114991--53115201	109	1.9	109	91	0	341	15	28	33	22	1.95
53115207--53115335	69	1.9	69	95	0	231	24	18	26	31	1.98
53122854--53122919	25	3.0	21	75	16	78	28	1	15	54	1.50
53124352--53124393	22	1.9	22	100	0	84	50	0	0	50	1.00
53124484--53124550	14	4.7	14	87	3	89	37	16	8	37	1.80
53124484--53124550	29	2.4	28	89	2	98	37	16	8	37	1.80
53130361--53130504	42	3.5	42	73	7	105	27	24	16	31	1.96
53133571--53133640	27	2.6	27	90	0	113	44	1	17	37	1.57
53142198--53142238	21	1.9	22	90	5	66	31	0	7	60	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328