genome.fa.s7.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  228  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68448958--68449014	29	2.0	29	82	3	71	47	12	8	31	1.72
68451730--68451879	67	2.2	67	81	8	171	32	17	28	21	1.96
68451754--68451936	67	2.8	64	77	8	192	30	16	30	22	1.96
68453757--68453807	7	7.1	7	78	12	59	41	0	15	43	1.47
68455907--68455985	27	3.0	26	83	9	97	34	20	24	21	1.97
68460987--68461048	28	2.2	28	88	5	90	33	27	8	30	1.86
68461157--68461246	28	3.2	27	85	4	108	20	23	23	33	1.97
68461157--68461271	55	2.1	56	82	8	137	19	22	21	36	1.95
68463048--68463176	30	4.5	30	83	6	151	31	13	26	27	1.94
68463048--68463176	58	2.2	57	87	1	177	31	13	26	27	1.94
68471003--68471133	30	4.5	30	86	8	171	32	13	25	28	1.94
68471003--68471133	58	2.2	58	86	4	174	32	13	25	28	1.94
68473220--68473306	24	3.6	24	96	0	165	21	17	25	35	1.95
68473220--68473328	48	2.3	48	91	3	175	24	17	23	33	1.96
68473220--68473328	24	4.5	24	90	2	157	24	17	23	33	1.96
68481093--68481179	24	3.6	24	96	0	165	21	17	25	35	1.95
68481093--68481201	48	2.3	48	91	3	175	24	17	23	33	1.96
68481093--68481201	24	4.5	24	90	2	157	24	17	23	33	1.96
68484826--68484864	19	2.0	20	85	14	55	38	10	7	43	1.67
68484987--68485104	43	2.8	42	78	8	114	28	27	19	23	1.98
68484946--68485102	85	1.8	84	83	5	208	27	26	20	26	1.99
68487421--68487592	46	3.7	45	79	11	188	29	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68488013--68488071	29	2.0	30	86	3	84	30	25	6	37	1.82
68492055--68492114	30	2.0	30	90	0	93	30	25	8	36	1.85
68495891--68496075	79	2.3	81	81	7	209	24	27	23	24	2.00
68495884--68496075	40	4.8	39	74	11	147	24	28	22	24	2.00
68500151--68500223	29	2.5	29	100	0	146	28	15	28	27	1.96
68500314--68500340	2	13.5	2	100	0	54	48	0	0	51	1.00
68502471--68502570	24	4.2	24	93	2	166	28	21	20	31	1.98
68502473--68502569	47	2.1	47	94	0	167	28	20	20	29	1.98
68502620--68502686	20	3.3	20	93	0	116	32	20	11	34	1.90
68502620--68502675	11	5.5	11	71	16	57	32	19	12	35	1.89
68502723--68502770	25	1.9	25	86	0	69	25	16	25	33	1.96
68514835--68515217	47	8.1	47	91	2	534	32	11	29	26	1.92
68514835--68515217	141	2.7	141	88	2	588	32	11	29	26	1.92
68515191--68515327	46	3.0	46	86	0	184	35	8	30	25	1.85
68515484--68515621	37	3.7	37	96	0	240	25	18	31	25	1.97
68520290--68520465	46	3.8	46	81	10	232	20	21	29	28	1.98
68520286--68520457	93	1.8	93	96	0	317	20	22	30	27	1.98
68523416--68523484	15	4.6	15	83	0	84	11	17	13	57	1.64
68523407--68523494	30	3.0	30	81	8	99	10	17	15	56	1.66
68525880--68526055	46	3.8	46	81	10	232	20	21	29	28	1.98
68525876--68526047	93	1.8	93	96	0	317	20	22	30	27	1.98
68527799--68527893	29	3.4	29	67	14	90	26	24	7	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68527805--68527918	55	2.1	55	98	0	219	28	23	8	38	1.85
68530850--68531052	66	3.1	65	76	12	193	32	17	28	22	1.96
68534265--68534598	27	12.6	27	80	5	335	39	21	8	30	1.83
68534265--68534517	53	4.8	54	85	6	358	39	21	8	30	1.82
68534259--68534501	103	2.3	102	88	4	326	38	20	8	31	1.83
68534265--68534599	53	6.3	53	82	6	333	39	21	8	30	1.83
68534265--68534555	156	1.9	156	86	1	413	39	21	8	30	1.84
68534637--68534857	27	8.3	27	87	1	275	34	19	20	25	1.96
68534637--68534839	80	2.5	81	84	1	282	35	19	20	24	1.96
68535284--68535348	22	3.0	22	80	8	78	20	23	23	33	1.97
68535506--68535607	27	3.8	27	84	5	125	18	22	21	37	1.94
68535744--68535822	31	2.5	31	87	0	104	22	18	10	48	1.78
68541847--68542054	49	4.2	49	97	0	389	28	8	31	31	1.86
68541982--68542128	74	2.0	74	98	0	285	29	6	32	30	1.83
68542031--68542081	25	2.0	25	100	0	102	31	3	33	31	1.76
68541933--68542176	123	2.0	123	99	0	479	29	7	32	30	1.85
68542056--68542225	49	3.5	49	95	0	286	31	8	30	30	1.86
68541884--68542225	172	2.0	172	95	1	614	30	8	30	30	1.86
68542296--68542382	37	2.3	36	90	5	129	20	19	32	27	1.97
68550669--68550806	75	1.9	74	89	4	215	28	14	22	34	1.93
68554672--68554847	46	3.8	45	78	12	187	21	19	30	29	1.97
68554668--68554839	93	1.8	93	91	0	281	20	19	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68557560--68557675	57	2.0	57	98	0	223	26	12	25	35	1.91
68559893--68560026	48	2.8	49	83	5	177	31	15	23	29	1.95
68559995--68560067	38	1.9	38	91	0	119	27	15	27	30	1.96
68562556--68562776	40	5.6	40	82	2	250	23	26	24	25	2.00
68572962--68573144	40	4.6	40	76	10	162	26	27	21	24	2.00
68572990--68573099	39	2.8	39	85	2	157	27	28	19	25	1.98
68572962--68573145	79	2.3	81	78	9	200	26	27	21	24	1.99
68578625--68578714	24	3.8	24	81	0	90	20	17	18	43	1.88
68581026--68581073	21	2.2	21	78	10	53	47	2	12	37	1.53
68581199--68581239	22	1.9	21	85	5	55	26	2	21	48	1.63
68582455--68582673	46	4.7	45	78	9	201	29	18	27	24	1.98
68582455--68582713	46	5.5	48	79	7	182	29	17	27	25	1.98
68589709--68589749	19	2.2	19	95	0	73	68	4	7	19	1.32
68592885--68592932	19	2.4	21	76	13	57	27	2	16	54	1.54
68599905--68600025	39	3.1	39	96	0	215	20	23	31	23	1.98
68605264--68605393	40	3.3	39	76	8	136	23	27	23	24	2.00
68605280--68605431	40	3.8	40	78	6	148	22	26	23	27	1.99
68605280--68605429	80	1.9	80	83	8	198	22	26	24	27	1.99
68609341--68609461	39	3.1	39	96	0	215	20	23	31	23	1.98
68613070--68613140	27	2.6	27	75	4	72	36	26	7	29	1.83
68613124--68613247	27	4.6	27	85	2	169	41	20	7	30	1.79
68613108--68613247	54	2.6	53	85	6	138	40	21	7	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68613124--68613276	81	1.9	81	86	5	220	40	19	9	30	1.83
68613230--68613291	27	2.3	27	94	0	106	41	16	14	27	1.87
68613124--68613274	54	2.8	54	85	4	162	41	19	9	29	1.83
68613911--68614007	28	3.5	28	91	4	153	45	25	8	20	1.79
68617219--68617289	27	2.6	27	75	4	72	36	26	7	29	1.83
68617273--68617345	27	2.7	27	91	0	119	41	23	6	28	1.80
68617324--68617386	27	2.3	27	94	0	108	41	15	14	28	1.87
68618006--68618087	27	3.0	27	94	0	146	47	21	9	20	1.79
68621271--68621314	21	2.1	21	100	0	88	45	0	13	40	1.44
68630593--68630703	28	4.0	28	83	6	145	24	12	32	30	1.92
68631364--68631393	15	2.1	14	93	6	51	20	13	20	46	1.83
68633823--68634087	46	5.7	46	73	12	238	24	20	26	29	1.99
68633872--68634036	47	3.5	47	76	14	205	24	18	27	29	1.98
68633823--68634082	93	2.8	93	94	1	450	23	20	26	29	1.99
68655366--68655596	49	4.7	49	83	4	257	29	27	16	25	1.97
68657614--68657641	2	14.0	2	100	0	56	50	0	0	50	1.00
68658356--68658541	40	4.7	40	84	5	200	26	21	25	26	1.99
68660985--68661053	15	4.7	15	79	15	72	59	18	14	7	1.58
68660985--68661053	30	2.3	31	80	14	83	59	18	14	7	1.58
68663994--68664238	49	4.9	49	83	3	175	28	28	17	24	1.98
68664007--68664185	49	3.6	49	89	0	214	30	28	17	24	1.97
68664050--68664231	101	1.8	101	86	2	269	29	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68684884--68684931	25	1.9	25	86	0	69	33	25	16	25	1.96
68684968--68685030	20	3.2	20	93	0	108	34	14	19	31	1.91
68685084--68685227	24	6.0	24	91	5	229	29	21	20	27	1.98
68685420--68685483	31	2.1	31	87	0	92	37	15	21	25	1.93
68696977--68697079	29	3.6	28	81	5	116	21	16	33	29	1.95
68703732--68703779	25	1.9	25	86	0	69	33	25	16	25	1.96
68703818--68703874	9	5.9	9	76	15	60	35	7	21	36	1.80
68703816--68703878	20	3.2	20	90	0	108	36	11	19	33	1.87
68703932--68704051	24	5.0	24	88	10	174	30	20	20	27	1.98
68704244--68704307	31	2.1	31	87	0	92	35	14	23	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328