genome.fa.s7.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  151  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44136963--44137037	20	3.9	19	84	10	91	37	10	18	33	1.86
44137087--44137222	52	2.7	50	86	5	177	27	21	24	27	1.99
44137087--44137216	26	5.1	26	79	3	149	27	21	23	27	1.99
44142855--44142895	5	8.6	5	78	10	50	78	2	0	19	0.87
44142849--44142884	18	2.0	18	89	10	56	75	0	0	25	0.81
44147903--44147964	5	11.6	5	83	13	79	79	1	0	19	0.82
44147897--44147953	28	2.0	29	96	3	107	77	0	0	22	0.77
44147906--44147963	11	5.3	11	86	12	75	81	1	0	17	0.78
44153186--44153279	42	2.2	43	83	5	111	34	25	14	25	1.94
44154425--44154455	13	2.4	13	94	0	53	35	9	9	45	1.70
44156861--44156935	25	2.9	26	82	4	98	42	10	14	32	1.80
44158440--44158599	80	2.0	80	100	0	320	35	17	11	36	1.86
44163281--44163555	137	2.0	137	97	0	523	22	9	21	46	1.79
44169328--44169382	23	2.4	23	76	8	60	32	10	0	56	1.34
44174321--44174381	23	2.6	22	75	12	59	39	6	1	52	1.37
44185782--44185879	49	2.0	49	87	0	142	24	22	14	38	1.91
44190296--44190393	49	2.0	49	89	0	151	24	21	14	39	1.90
44190655--44190687	17	2.0	16	94	5	57	63	0	0	36	0.95
44191330--44191368	12	3.2	12	81	3	51	84	0	15	0	0.62
44191827--44191868	17	2.6	16	82	10	50	30	9	14	45	1.77
44193743--44193836	28	3.2	28	84	4	98	28	12	27	30	1.93
44193765--44193836	28	2.5	29	91	6	112	30	13	26	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44195234--44195296	2	31.5	2	100	0	126	50	49	0	0	1.00
44195941--44196006	20	3.1	21	81	14	75	25	19	36	18	1.94
44199291--44199334	13	3.1	14	81	12	54	47	2	6	43	1.42
44203496--44203733	40	5.9	40	91	2	338	27	21	26	25	1.99
44203496--44203761	120	2.2	120	84	9	346	27	21	25	25	2.00
44203500--44203761	40	6.6	39	89	5	293	27	21	25	25	1.99
44206302--44206452	40	3.8	40	80	6	164	26	23	27	23	2.00
44214292--44214433	40	3.5	40	83	1	124	27	23	26	21	1.99
44214331--44214443	40	2.8	39	86	5	145	23	23	28	23	2.00
44216117--44216279	40	4.2	39	88	3	247	22	20	33	23	1.97
44216134--44216315	40	4.6	40	84	2	147	21	22	32	22	1.98
44216134--44216310	80	2.2	78	86	4	239	22	23	32	21	1.98
44224033--44224195	39	4.2	39	91	0	263	22	20	33	23	1.97
44224033--44224226	39	4.9	39	89	0	253	22	21	32	23	1.98
44225854--44225906	20	2.4	21	81	12	54	69	1	5	22	1.19
44231124--44231184	30	2.0	30	83	0	77	31	22	8	37	1.84
44235569--44235629	30	2.0	30	83	0	77	31	22	8	37	1.84
44239821--44239890	27	2.5	28	86	2	106	25	11	28	34	1.91
44246961--44247030	27	2.5	28	90	2	115	25	12	28	32	1.93
44254146--44254202	22	2.6	22	82	0	69	15	22	24	36	1.94
44254533--44254645	6	18.3	6	69	18	72	18	19	14	47	1.82
44254533--44254624	25	3.7	25	89	0	139	18	20	14	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44256707--44256901	27	7.2	27	86	0	237	36	17	18	26	1.94
44256714--44256901	81	2.3	81	87	1	270	36	18	19	25	1.95
44257285--44257348	22	2.9	22	75	9	67	21	25	21	31	1.98
44257679--44257768	6	14.7	6	69	17	60	18	17	14	48	1.81
44257675--44257747	31	2.4	31	90	0	110	19	17	13	49	1.80
44263454--44263564	42	2.6	43	75	7	109	26	18	22	32	1.97
44263452--44263564	43	2.6	42	74	10	113	25	18	23	32	1.97
44269986--44270134	43	3.5	44	76	14	125	24	18	28	29	1.98
44270026--44270134	42	2.6	42	80	10	116	24	18	27	29	1.98
44271642--44271834	98	2.0	98	92	0	323	22	21	31	24	1.98
44279608--44279768	80	2.0	80	96	0	295	47	10	15	26	1.78
44280574--44280627	27	2.0	27	100	0	108	70	0	7	22	1.12
44289685--44289818	56	2.4	56	91	0	214	35	25	12	26	1.92
44294470--44294503	15	2.2	16	89	5	52	26	14	11	47	1.79
44296776--44296869	38	2.4	38	83	1	107	51	11	1	36	1.46
44301985--44302201	64	3.3	64	62	18	145	32	25	15	25	1.95
44301951--44302235	136	2.1	136	96	0	525	32	25	17	24	1.97
44302242--44302289	21	2.3	21	85	7	62	33	52	2	12	1.51
44302481--44302533	26	2.0	26	85	7	72	26	13	22	37	1.91
44304013--44304148	26	5.2	26	94	0	236	36	25	5	33	1.78
44305095--44305219	9	13.6	9	68	20	55	62	3	0	33	1.17
44305092--44305215	20	6.6	19	69	18	82	62	3	0	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44305095--44305218	18	6.7	17	76	14	88	62	3	0	33	1.16
44305180--44305273	28	3.4	28	72	10	77	61	3	1	34	1.19
44305235--44305280	19	2.4	18	82	13	56	65	0	0	34	0.93
44305312--44305345	17	2.0	17	94	0	59	32	0	0	67	0.91
44305312--44305549	9	24.8	9	69	16	115	33	2	4	60	1.28
44305366--44305474	19	5.7	18	71	21	71	32	0	1	65	1.10
44305394--44305481	19	4.7	19	78	12	85	31	1	2	64	1.13
44309505--44309817	27	11.7	27	83	8	365	38	20	10	30	1.86
44309504--44309817	80	3.9	81	83	7	399	38	20	10	29	1.86
44310924--44310957	18	1.9	18	94	5	61	44	11	8	35	1.72
44315230--44315292	28	2.3	27	88	2	90	19	17	38	25	1.93
44315609--44316055	27	16.6	27	85	5	453	37	20	11	31	1.88
44315994--44316074	27	3.0	27	89	3	110	35	17	18	28	1.93
44317268--44317402	26	5.3	26	91	3	199	30	22	18	28	1.97
44317452--44317558	20	5.3	20	92	2	162	31	17	10	40	1.83
44317469--44317565	9	9.8	10	66	16	51	32	17	9	40	1.81
44325243--44325291	17	2.8	18	74	22	50	24	18	22	34	1.96
44326114--44326264	40	3.8	40	79	6	155	26	23	27	23	2.00
44326150--44326280	40	3.3	40	79	4	149	24	22	26	25	2.00
44328381--44328444	31	2.1	31	84	0	83	23	25	15	35	1.94
44328654--44328790	26	5.3	26	90	6	201	31	22	17	28	1.97
44328840--44328946	20	5.3	20	92	2	162	31	17	10	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44328857--44328953	9	9.8	10	66	16	51	32	17	9	40	1.81
44332141--44332208	34	2.0	34	100	0	136	52	14	5	26	1.64
44337103--44337265	42	3.9	42	81	4	193	26	24	16	31	1.96
44337103--44337266	85	1.9	84	85	1	220	27	24	16	31	1.96
44337805--44337866	3	20.7	3	100	0	124	0	33	0	66	0.92
44338894--44338958	28	2.3	28	89	5	96	44	1	4	49	1.32
44342778--44342874	40	2.5	38	78	8	99	15	24	28	30	1.96
44342723--44342874	77	1.9	79	80	11	179	17	22	26	32	1.96
44343770--44343826	20	2.9	21	82	10	75	21	35	29	14	1.92
44349173--44349226	3	18.0	3	85	14	76	31	1	0	66	1.02
44349176--44349209	17	2.0	17	100	0	68	29	0	0	70	0.87
44349173--44349211	20	2.0	20	100	0	78	30	0	0	69	0.89
44351382--44351435	20	2.7	20	85	5	74	24	35	29	11	1.90
44357820--44358041	40	5.6	39	87	6	274	25	21	27	25	1.99
44357820--44358039	77	2.8	79	85	8	297	25	21	27	25	1.99
44357820--44358048	117	1.9	118	82	9	281	25	21	27	24	1.99
44357820--44358074	40	6.5	39	85	6	236	26	21	27	25	1.99
44365954--44366176	79	2.8	80	82	10	251	25	22	26	25	2.00
44365954--44366178	40	5.7	40	86	5	271	25	22	26	25	2.00
44365954--44366178	119	1.9	120	81	8	280	25	22	26	25	2.00
44366022--44366201	79	2.3	79	82	7	206	27	21	26	25	1.99
44370000--44370081	41	2.0	41	97	0	155	25	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44370203--44370401	42	4.6	42	72	5	130	26	25	17	30	1.97
44373844--44373933	26	3.5	26	74	8	94	35	15	23	25	1.94
44373844--44374114	52	5.2	52	75	10	198	33	15	23	26	1.95
44373859--44374115	26	10.0	24	69	16	142	32	15	24	27	1.96
44385222--44385393	93	1.8	93	96	0	317	27	29	21	20	1.98
44385215--44385390	46	3.8	46	79	12	216	28	29	21	20	1.98
44392799--44392970	93	1.8	93	96	0	317	27	29	21	20	1.98
44392792--44392967	46	3.8	46	79	12	216	28	29	21	20	1.98
44396424--44396610	40	4.7	39	86	4	196	24	27	21	27	1.99
44398994--44399152	78	2.0	78	97	0	300	33	13	23	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328